BAC Information

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BAC

Clone NameB6Ng01-138C03
Chromosome4 (Build37)
Map Location 146,084,632 - 146,163,240
singlet/doubletdoublet
Overlap geneMGC117846, OTTMUSG00000010694, LOC626480
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C03.bB6Ng01-138C03.g
ACCDH937474DH937475
length1,121442
definitionDH937474|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C03, 5' end.DH937475|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,162,185 - 146,163,240)(146,084,632 - 146,085,077)
sequence
gaattctctgatgctttctcagagtgcatttgtcaggaaagcatttgtcg
cattcactacatttgtaaggtttctttcctgaatgaattctacgatgaat
actaagatgggatggttgggtaaagcatttgtcacactcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaactctcagactgcctttg
tcagtaaagcatttgtcacattcattacatttgtaaggtttctctcctgt
atgaattctctgatgctttctcagagtgcatttgtcagtaaagcatttgt
cgcattcactacatttgtaaggtttctctcctgtatgaattctctgatgc
tttctcagagtgcatttgtcaggaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattgtatgatgaatactaagatgggaag
gttgggtaaagcatttgtcactttcactatatatgtaagatttctttcct
ggataaattctctgctgactttgaagattgtcactctgagtaaagcattt
gtcaaattcaccacaagtgtaagtgctcatttcactattgttttgtctag
aaaccaaaacctcatcaagatttttatttctgttgtgttctttcttctct
atgtgggttccttgattgagactaatgatagaagacccctttaaacagtt
tacacagtctttatatgtgcaaacttctttagtggtcccagttttatgtc
tttttaggtttgaggattggagagtggcatctctgtggttagtgttataa
ggtgtactttcggaggattcatggatcacatttctaagctcattacattt
agaagacttctttcggttatgcccatgctcattgacaatgtgctgtgtgt
cttgttccaagaccttctccttctcatagtttccacatatgcagtgattt
tctgaaaaaggggaattagggataacagggattacttatatgaggagtag
tatgatccaataatcactgttctatgtattcataattctcagagaggttt
tccttttttatcattgcatggatctcgaagtactttaaatctgatctatt
caatggcaaatgatatagcct
tctggaatttcattaagtttgtttctgccttcttgaattcctgtgcttgt
tccctctttatgacatttgtccacattgaatggtgttcagattatatttt
gacttttgtctcttgagtttgtttcataattcattttgtcatgagaattg
gtattggtttagtgatttaggttagggaaattttattaacattgtcaaat
tgctttagctacagcctctcaattttctttagctgtgtgtcatttaggtc
aggtgacagggatttccatatcaggtgttgtgaataaacttttagaatct
agggtggtgggaggaactaggttacagttacagtctaaatatatcattac
ttactttcatgactgtacattttcaagattcctggtatcattttgctttt
aatgtttatatatatatatgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146162185_146163240
seq2: B6Ng01-138C03.b_118_1161 (reverse)

seq1  AGGCTATTATCACTTTTGCCATTTGATATAGATCAGATTTGAGGTACTTC  50
      |||||| |||||  ||||||| |||| ||||||||||||| | |||||||
seq2  AGGCTA-TATCA--TTTGCCA-TTGA-ATAGATCAGATTTAAAGTACTTC  45

seq1  TGAGGATCCATGCAATGATTAAAAAAAGGAAAACCTCTCTTGAGAA-TAT  99
       || |||||||||||||||  |||||||||||||||||| |||||| |||
seq2  -GA-GATCCATGCAATGAT--AAAAAAGGAAAACCTCTC-TGAGAATTAT  90

seq1  GAATACATAGAACAGTGATTATTGGATCATACTTACTCCTCATATAAGTA  149
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATACATAGAACAGTGATTATTGGATCATAC-TACTCCTCATATAAGTA  139

seq1  ATCCCTGTTATCCCTAATTCCCCCTTTTTTCAGAAAATCACTGCATATGT  199
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ATCCCTGTTATCCCTAATTCCCC--TTTTTCAGAAAATCACTGCATATGT  187

seq1  GGAAACTATGAGAAGGAGAAGGTCTTGGAACAAGAAACACAGCACATTGT  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGAAACTATGAGAAGGAGAAGGTCTTGGAACAAGACACACAGCACATTGT  237

seq1  CAATGAGCATGGGCATAACCGAAAGAAGTCTTCTAAATGTAATGAGGTTA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAATGAGCATGGGCATAACCGAAAGAAGTCTTCTAAATGTAATGAGCTTA  287

seq1  GAAATGTGATCCATGAATCCTCCGAAAGTACACCTTATAACACTAACCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGATCCATGAATCCTCCGAAAGTACACCTTATAACACTAACCAC  337

seq1  AGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCCACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGAC  387

seq1  CACTAAAGGAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGT  449
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAGAAGTTTGCACATATAAAGACTGTGTAAACTGTTTAAAGGGGT  437

seq1  CTTCTATCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCATTAGTCTCAATCAAGGAACCCACATAGAGAAGAAAGAACAC  487

seq1  AACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAGACAAAACAATAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATAAAAATCTTGATGAGGTTTTGGTTTCTAGACAAAACAATAG  537

seq1  TGAAATGAACACTTACACTTGTGGTGAATTTGACAAATGCTTTACTCAGA  599
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAGCACTTACACTTGTGGTGAATTTGACAAATGCTTTACTCAGA  587

seq1  GTGACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGAAAGAAATCTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATCTTCAAAGTCAGCAGAGAATTTATCCAGGAAAGAAATCTTAC  637

seq1  ATATATAGTGAAAGTGACAAATGCTTTACCCAACCTTCCCATCTTAGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAGTGAAAGTGACAAATGCTTTACCCAACCTTCCCATCTTAGTAT  687

seq1  TCATCATACAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATACAATTCATTCAGGAGAGAAACCTTACAAATGTAGTGAATGCG  737

seq1  ACAAATGCTTTACTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCAT  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTTTCCTGACAAATGCACTCTGAGAAAGCATCAGAGAATTCAT  787

seq1  ACAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGAAACCTTACAAATGTAGTGAATGCGACAAATGCTTTACTGA  837

seq1  CAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCACTCTGAGAAAGCATCAGAGAATTCATACAGGAGAGAAACCTT  887

seq1  ACAAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAATGAATGTGACAAATGCTTTACTGACAAAGGCAGTCTGAGA  937

seq1  GTTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAGTG  987

seq1  TGACAAATGCTTTACCCAACCATCCCATCTTAGTATTCATCGTAGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACCCAACCATCCCATCTTAGTATTCATCGTAGAATTC  1037

seq1  ATTCAGG  1056
      |||||||
seq2  ATTCAGG  1044

seq1: chr4_146084632_146085077
seq2: B6Ng01-138C03.g_67_514

seq1  GAATTCTCTGGAATTTCATTAAGTTTGTTTCTGCCTTCTTGAATTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAATTTCATTAAGTTTGTTTCTGCCTTCTTGAATTCCTGT  50

seq1  GCTTGTTCCCTCTTTATGACATTTGTCCACATTGAATGGTGTTCAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTCCCTCTTTATGACATTTGTCCACATTGAATGGTGTTCAGATTA  100

seq1  TATTTTGACTTTTGTCTCTTGAGTTTGTTTCATAATTCATTTTGTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGACTTTTGTCTCTTGAGTTTGTTTCATAATTCATTTTGTCATGA  150

seq1  GAATTGGTATTGGTTTAGTGATTTAGGTTAGGGAAATTTTATTAACATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTATTGGTTTAGTGATTTAGGTTAGGGAAATTTTATTAACATTG  200

seq1  TCAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTAGCTGTGTGTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGCTTTAGCTACAGCCTCTCAATTTTCTTTAGCTGTGTGTCATT  250

seq1  TAGGTCAGGTGACAGGGATTTCCATATGAGGTGTTGTGAATAAACTTTGA  300
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TAGGTCAGGTGACAGGGATTTCCATATCAGGTGTTGTGAATAAACTTTTA  300

seq1  GAATCTAGGGTGGTGGGAGGAACTAGGTTACAGTTACAGTCTAAATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGGGTGGTGGGAGGAACTAGGTTACAGTTACAGTCTAAATATAT  350

seq1  CATTACTTACTTTCATGACTGTACATTTTCAAGATTCCTGGTATCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTACTTTCATGACTGTACATTTTCAAGATTCCTGGTATCATTTT  400

seq1  GCTTTTAATGTTTATATATATATGTGTGTGTGTGTGTGTGTGTGTG--  446
      ||||||||||||||||||||||| ||||||||||||||||||||||  
seq2  GCTTTTAATGTTTATATATATATATGTGTGTGTGTGTGTGTGTGTGTG  448