BAC Information

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BAC

Clone NameB6Ng01-138C23
Chromosome4 (Build37)
Map Location 143,196,836 - 143,197,713
singlet/doubletsinglet
Overlap geneLOC666049
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695
Downstream geneLOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C23.bB6Ng01-138C23.g
ACCDH937514DH937515
length1,205878
definitionDH937514|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C23, 5' end.DH937515|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcaatccatgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagcagtagccagg
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatgaccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcacctttgagtgagcatt
tacatgggacacgaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcgtacatctggccacttcttcttacaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagttgatcatagggaacaccccatgag
gctatagtgcatgcttggcagcagatggcattgtaacaggagtagaaacc
ataggcatttgagcaacttcttcatgtaacttgcttgtgccttcaggacc
tgctctggcccgatcacgtataataccacttccatttgataatagaactg
ctggctgtgcgcgttcactttggactgcaggctcgataatatccagctca
tgatggggtagttcaggtcgcatagtaaacttgggttcctaatgtgccaa
ccata
gaattctttgcttttattgctactggtcatggctacaaaaggagtacaga
ggtcagtttagaaaaatgttaccaaagcacagacagaaatcacaaatgaa
tagtgacaacccaggtttggacagagcaaaggctgtagagaaggagagag
atatttgatatccactagtgttcttttactacaagatgatctatgaagaa
tatgaacccataaacatttgaggtgaatgatgggtaaggtagtccagcac
tcattgagacaaagttggtgaatgaggagctcaagtcccatgtgggatac
aggagggaatttttgaaaagtaaattaaaatataaggaacattctcttct
ttgctctattgaatctttctctgatactgttgagtctatcatcttttgtt
cccatagaaatttggtgttattctggatagcaatccccatatatccagaa
aatttgattcataggaggtaaattggcatcaaaaacattagtttcacagt
tgtatagatacaagccattggagagcaatacaagaaaagtgttacaatga
gcaagggaaacatataggataaattttcaaaatagctttatttgaattga
tcccaataggtcatggatctcagtgtggcccagacaacgcagtgaatctc
ctctactcccaacactgcaactgactcagactgtctcaaaaccctcaaaa
tatgcatgaagttagaacaaagttgtacagtctctctactacaatacaac
gcatgtcaccatagcaatccagaaaggaaggatgcatctccatgattcaa
ttcacactggaataacactggaatatcctcaattacagtctctctctccc
tctccctctccctctccctctccctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143196836_143197713
seq2: B6Ng01-138C23.g_66_943 (reverse)

seq1  GAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGACTGTAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGACTGTAATTGA  50

seq1  GGATATTCCAGTGTTATTCCAGTGTGAATTGAATCATGGAGATGCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCCAGTGTTATTCCAGTGTGAATTGAATCATGGAGATGCATCCT  100

seq1  TCCTTTCTGGATTGCTATGGTGACATGCGTTGTATTGTAGTAGAGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGGATTGCTATGGTGACATGCGTTGTATTGTAGTAGAGAGACT  150

seq1  GTACAACTTTGTTCTAACTTCATGCATATTTTGAGGGTTTTGAGACAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACTTTGTTCTAACTTCATGCATATTTTGAGGGTTTTGAGACAGTC  200

seq1  TGAGTCAGTTGCAGTGTTGGGAGTAGAGGAGATTCACTGCGTTGTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGTTGCAGTGTTGGGAGTAGAGGAGATTCACTGCGTTGTCTGGG  250

seq1  CCACACTGAGATCCATGACCTATTGGGATCAATTCAAATAAAGCTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGAGATCCATGACCTATTGGGATCAATTCAAATAAAGCTATTTT  300

seq1  GAAAATTTATCCTATATGTTTCCCTTGCTCATTGTAACACTTTTCTTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTATCCTATATGTTTCCCTTGCTCATTGTAACACTTTTCTTGTA  350

seq1  TTGCTCTCCAATGGCTTGTATCTATACAACTGTGAAACTAATGTTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCAATGGCTTGTATCTATACAACTGTGAAACTAATGTTTTTGA  400

seq1  TGCCAATTTACCTCCTATGAATCAAATTTTCTGGATATATGGGGATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTTACCTCCTATGAATCAAATTTTCTGGATATATGGGGATTGCT  450

seq1  ATCCAGAATAACACCAAATTTCTATGGGAACAAAAGATGATAGACTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAATAACACCAAATTTCTATGGGAACAAAAGATGATAGACTCAAC  500

seq1  AGTATCAGAGAAAGATTCAATAGAGCAAAGAAGAGAATGTTCCTTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAGAGAAAGATTCAATAGAGCAAAGAAGAGAATGTTCCTTATATT  550

seq1  TTAATTTACTTTTCAAAAATTCCCTCCTGTATCCCACATGGGACTTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACTTTTCAAAAATTCCCTCCTGTATCCCACATGGGACTTGAGC  600

seq1  TCCTCATTCACCAACTTTGTCTCAATGAGTGCTGGACTACCTTACCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATTCACCAACTTTGTCTCAATGAGTGCTGGACTACCTTACCCATC  650

seq1  ATTCACCTCAAATGTTTATGGGTTCATATTCTTCATAGATCATCTTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCAAATGTTTATGGGTTCATATTCTTCATAGATCATCTTGTAG  700

seq1  TAAAAGAACACTAGTGGATATCAAATATCTCTCTCCTTCTCTACAGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAACACTAGTGGATATCAAATATCTCTCTCCTTCTCTACAGCCTT  750

seq1  TGCTCTGTCCAAACCTGGGTTGTCACTATTCATTTGTGATTTCTGTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTCCAAACCTGGGTTGTCACTATTCATTTGTGATTTCTGTCTGT  800

seq1  GCTTTGGTAACATTTTTCTAAACTGACCTCTGTACTCCTTTTGTAGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTAACATTTTTCTAAACTGACCTCTGTACTCCTTTTGTAGCCAT  850

seq1  GACCAGTAGCAATAAAAGCAAAGAATTC  878
      ||||||||||||||||||||||||||||
seq2  GACCAGTAGCAATAAAAGCAAAGAATTC  878