BAC Information

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BAC

Clone NameB6Ng01-139J17
Chromosome4 (Build37)
Map Location 99,666,442 - 99,839,979
singlet/doubletdoublet
Overlap geneRor1
Upstream geneDock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139J17.bB6Ng01-139J17.g
ACCDH938548DH938549
length9671,053
definitionDH938548|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J17, 5' end.DH938549|Mus musculus domesticus DNA, BAC clone: B6Ng01-139J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,839,016 - 99,839,979)(99,666,442 - 99,667,499)
sequence
gaattcactaataaaggctctgatgacttttatgtcgctttatgtttgtt
ctatacttaatcattcttaaaaggcttcttggtatagggtcacttactcc
tcagttgaaccctaagtagttcaggaaatacctgatagcccccgagatat
gaatgggtgacaccaaggcatagagaggccacatgctcataggagttaca
taacaaaaaccacccacacagagaggaaaaatgcatcctaacaaaggaaa
aatgtactccatggtcatcaggggcctttaagagacagcacgtgggtgag
cactgaatctgaccgggagccatggagcctgaccactcctccctaacctc
cagattgctttactcaaaattctactttcaaagataagcctcccccacag
ccacaggaagatcagctaggttataagagctatgaagacaagagatttgg
cagacagatcagacaaagaaggccctctttgtgcatcctgtctgctgtgg
agcaaactttgttcctcagcatcttgtggagacagctcaggaagaaaact
cgtaaaacctgggggagaggaaggacagtaagtagaaagagagccattca
ttttattcattgtttgcatccaatcaaaatctcgttaatatttcttatag
atcatgctaagtattccagtttcttcgttttagtaaaccttagcaaagat
atgagatcaatccttaactttttttacaacacagaaagaatgggaacact
gatgacctagttcactaaaacaaacattttccttttaagattgcctaaaa
tgctttgaacacttcctctacatccagttggctttcccatttttatcgat
aagtgctgtgatctcaaagaagaattcctccaaactgttatttttccagg
tctgacagcaggcaatcacagtgcggtagaacagttcttccctgaagctt
gcggggggggggggggt
gaattcctccttatgttaatgaggcacccacagcaccctggccctggcca
aggatgtacacttaccctgatagcctccaaaggttcaaatggcctttgtt
gcctccatttaaatgagttgtctaatggaagatgtctcctgagagtgtgt
tcttgctgtgttcactaccgattgagctcactcagagccccctcttctcc
ttctcaactccttctccccttcccaactcaggatccactggttgtgatcc
ctagaggtggggaagcagagcccaaatggcaacaggtggagggtttaggg
caacaaggggctgagagggggagagacaggaataggaggggagcatgcgt
aatacacttgtataaaaataaagatgaggatggtgacttttaggaacctt
ccagtcactgtatcctaacttcttacaaccttgagagtgaataccattag
cccatggtacagaggagacaataaaggccttgagtagattacaggaacaa
atcaaatatttccactgcatggtagaagtgcaaaactctcctttctagag
agcttcattccttcgtttgggaaataagattttattcagagtcagcctct
ctgcaatgcattccatgacccattagactaaagctggccttacataataa
tatactgagctttaaaaaactcttcttggaaattagtctgaacaggttag
agggtgcgccagaaaatcggacagcttctgagacaggcagaagcacagag
ccgctgaggcagcacccttggcgggccgcagacagccggccaccgtccgg
accagaggacaggtgtccgcctggcttggggaggtggcctcagcttcagc
agcagcggtcgccatcttgattcgggactccctggaacttaaggaattag
tctgcacaggtgagagtctgcaccacagaactgaacagcttctgggaact
gtccaagcaacacagctctgaaaaaggcctgttttgggcttcttcttcgg
caggaggaggtccaaaacagatattctgccgcactttcctgtaagagagc
ttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99839016_99839979
seq2: B6Ng01-139J17.b_43_1008 (reverse)

seq1  CCCCCCCCCCCCCCGCAAGCTTTCAGGG-AGAACTGTTCTACCGCACCTG  49
      |||||||||||||||||||| ||||||| ||||||||||||||||| |||
seq2  CCCCCCCCCCCCCCGCAAGC-TTCAGGGAAGAACTGTTCTACCGCA-CTG  48

seq1  TGATTGCCTGCTGTCAGACCTGG-AAAATAACAGTTTGGAGGAATTCTTC  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATTGCCTGCTGTCAGACCTGGAAAAATAACAGTTTGGAGGAATTCTTC  98

seq1  TTTGAGATCACAGCACTTATCGAT-AAAATGGG-AAGCCAACTGGATGTA  146
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TTTGAGATCACAGCACTTATCGATAAAAATGGGAAAGCCAACTGGATGTA  148

seq1  GAGGAAGTGTTCAAAGCATTTTAGGCAATCTTAAAAGGAAAATGTTTGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGTTCAAAGCATTTTAGGCAATCTTAAAAGGAAAATGTTTGTT  198

seq1  TTAGTGAACTAGGTCATCAGTGTTCCCATTCTTTCTGTGTTGTAAAAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAACTAGGTCATCAGTGTTCCCATTCTTTCTGTGTTGTAAAAAAA  248

seq1  GTTAAGGATTGATCTCATATCTTTGCTAAGGTTTACTAAAACGAAGAAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGATTGATCTCATATCTTTGCTAAGGTTTACTAAAACGAAGAAAC  298

seq1  TGGAATACTTAGCATGATCTATAAGAAATATTAACGAGATTTTGATTGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACTTAGCATGATCTATAAGAAATATTAACGAGATTTTGATTGGA  348

seq1  TGCAAACAATGAATAAAATGAATGGCTCTCTTTCTACTTACTGTCCTTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAATGAATAAAATGAATGGCTCTCTTTCTACTTACTGTCCTTCC  398

seq1  TCTCCCCCAGGTTTTACGAGTTTTCTTCCTGAGCTGTCTCCACAAGATGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCAGGTTTTACGAGTTTTCTTCCTGAGCTGTCTCCACAAGATGC  448

seq1  TGAGGAACAAAGTTTGCTCCACAGCAGACAGGATGCACAAAGAGGGCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACAAAGTTTGCTCCACAGCAGACAGGATGCACAAAGAGGGCCTT  498

seq1  CTTTGTCTGATCTGTCTGCCAAATCTCTTGTCTTCATAGCTCTTATAACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTGATCTGTCTGCCAAATCTCTTGTCTTCATAGCTCTTATAACC  548

seq1  TAGCTGATCTTCCTGTGGCTGTGGGGGAGGCTTATCTTTGAAAGTAGAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATCTTCCTGTGGCTGTGGGGGAGGCTTATCTTTGAAAGTAGAAT  598

seq1  TTTGAGTAAAGCAATCTGGAGGTTAGGGAGGAGTGGTCAGGCTCCATGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAAGCAATCTGGAGGTTAGGGAGGAGTGGTCAGGCTCCATGGC  648

seq1  TCCCGGTCAGATTCAGTGCTCACCCACGTGCTGTCTCTTAAAGGCCCCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTCAGATTCAGTGCTCACCCACGTGCTGTCTCTTAAAGGCCCCTG  698

seq1  ATGACCATGGAGTACATTTTTCCTTTGTTAGGATGCATTTTTCCTCTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGGAGTACATTTTTCCTTTGTTAGGATGCATTTTTCCTCTCTG  748

seq1  TGTGGGTGGTTTTTGTTATGTAACTCCTATGAGCATGTGGCCTCTCTATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGTTTTTGTTATGTAACTCCTATGAGCATGTGGCCTCTCTATG  798

seq1  CCTTGGTGTCACCCATTCATATCTCGGGGGCTATCAGGTATTTCCTGAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGTCACCCATTCATATCTCGGGGGCTATCAGGTATTTCCTGAAC  848

seq1  TACTTAGGGTTCAACTGAGGAGTAAGTGACCCTATACCAAGAAGCCTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGGGTTCAACTGAGGAGTAAGTGACCCTATACCAAGAAGCCTTTT  898

seq1  AAGAATGATTAAGTATAGAACAAACATAAAGCGACATAAAAGTCATCAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATTAAGTATAGAACAAACATAAAGCGACATAAAAGTCATCAGA  948

seq1  GCCTTTATTAGTGAATTC  964
      ||||||||||||||||||
seq2  GCCTTTATTAGTGAATTC  966

seq1: chr4_99666442_99667499
seq2: B6Ng01-139J17.g_69_1121

seq1  GAATTCCTCCTTATGTTAATGAGGCACCCACAGCACCCTGGCCCTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTATGTTAATGAGGCACCCACAGCACCCTGGCCCTGGCCA  50

seq1  AGGATGTACACTTACCCTGATAGCCTCCAAAGGTTCAAATGGCCTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTACACTTACCCTGATAGCCTCCAAAGGTTCAAATGGCCTTTGTT  100

seq1  GCCTCCATTTAAATGAGTTGTCTAATGGAAGATGTCTCCTGAGAGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATTTAAATGAGTTGTCTAATGGAAGATGTCTCCTGAGAGTGTGT  150

seq1  TCTTGCTGTGTTCACTACCGATTGAGCTCACTCAGAGCCCCCTCTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGTGTTCACTACCGATTGAGCTCACTCAGAGCCCCCTCTTCTCC  200

seq1  TTCTCAACTCCTTCTCCCCTTCCCAACTCAGGATCCACTGGTTGTGATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTCCTTCTCCCCTTCCCAACTCAGGATCCACTGGTTGTGATCC  250

seq1  CTAGAGGTGGGGAAGCAGAGCCCAAATGGCAACAGGTGGAGGGTTTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGTGGGGAAGCAGAGCCCAAATGGCAACAGGTGGAGGGTTTAGGG  300

seq1  CAACAAGGGGCTGAGAGGGGGAGAGACAGGAATAGGAGGGGAGCATGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGGGCTGAGAGGGGGAGAGACAGGAATAGGAGGGGAGCATGCGT  350

seq1  AATACACTTGTATAAAAATAAAGATGAGGATGGTGACTTTTAGGAACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTTGTATAAAAATAAAGATGAGGATGGTGACTTTTAGGAACCTT  400

seq1  CCAGTCACTGTATCCTAACTTCTTACAACCTTGAGAGTGAATACCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACTGTATCCTAACTTCTTACAACCTTGAGAGTGAATACCATTAG  450

seq1  CCCATGGTACAGAGGAGACAATAAAGGCCTTGAGTAGATTACAGGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTACAGAGGAGACAATAAAGGCCTTGAGTAGATTACAGGAACAA  500

seq1  ATCAAATATTTCCACTGCATGGTAGAAGTGCAAAACTCTCCTTTCTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATTTCCACTGCATGGTAGAAGTGCAAAACTCTCCTTTCTAGAG  550

seq1  AGCTTCATTCCTTCGTTTGGGAAATAAGATTTTATTCAGAGTCAGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATTCCTTCGTTTGGGAAATAAGATTTTATTCAGAGTCAGCCTCT  600

seq1  CTGCAATGCATTCCATGACCCATTAGACTAAAGCTGGCCTTACATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGCATTCCATGACCCATTAGACTAAAGCTGGCCTTACATAATAA  650

seq1  TATACTGAGCTTTAAAAAACTCTTCTTGGAAATTAGTCTGAACAGGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGAGCTTTAAAAAACTCTTCTTGGAAATTAGTCTGAACAGGTTAG  700

seq1  AGGGTGCGCCAGAAAATCGGACAGCTTCTGAGACAGGCAGAAGCACAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCGCCAGAAAATCGGACAGCTTCTGAGACAGGCAGAAGCACAGAG  750

seq1  CCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCCGGCCACCGTCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGAGGCAGCACCCTTGGCGGGCCGCAGACAGCCGGCCACCGTCCGG  800

seq1  ACCAGAGGACAGGTGTCCGCCTGGCTT-GGGAGGTGGCCTCAGCCTCAGC  849
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  ACCAGAGGACAGGTGTCCGCCTGGCTTGGGGAGGTGGCCTCAGCTTCAGC  850

seq1  AGCAGCGGTCGCCATCTTGATTCCGGGACTCCCTGGAACTTAGGAATTTA  899
      |||||||||||||||||||||| ||||||||||||||||||| | | |||
seq2  AGCAGCGGTCGCCATCTTGATT-CGGGACTCCCTGGAACTTAAGGAATTA  899

seq1  GTCTGCACAGGTGAGAGTCTGCACCACAGAAACTG-ACAGCTTCTGGGAA  948
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  GTCTGCACAGGTGAGAGTCTGCACCACAG-AACTGAACAGCTTCTGGGAA  948

seq1  CTGCCAAAGCAACACAGCTTCTGAGAAAGGCCCTGTTTTGGGCCTTCTTC  998
      ||| | |||||||||||| ||||| ||||| ||||||||||| |||||||
seq2  CTGTCCAAGCAACACAGC-TCTGAAAAAGG-CCTGTTTTGGG-CTTCTTC  995

seq1  TTCGGCCAGGAGGAGGTCCAAAAACAAGATA-TCTG-CGCACCTTCCCTG  1046
      ||||| |||||||||||||||||   ||||| |||| |||| ||| ||||
seq2  TTCGG-CAGGAGGAGGTCCAAAA--CAGATATTCTGCCGCA-CTTTCCTG  1041

seq1  TAAGAGAGCTTG  1058
      ||||||||||||
seq2  TAAGAGAGCTTG  1053