BAC Information

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BAC

Clone NameB6Ng01-140C04
Chromosome4 (Build37)
Map Location 54,955,967 - 55,106,465
singlet/doubletdoublet
Overlap geneEG666920, Zfp462
Upstream geneLOC100041280, LOC666901, LOC100041303, LOC384018
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140C04.bB6Ng01-140C04.g
ACCDH938945DH938946
length1,107990
definitionDH938945|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C04, 5' end.DH938946|Mus musculus domesticus DNA, BAC clone: B6Ng01-140C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,105,345 - 55,106,465)(54,955,967 - 54,957,000)
sequence
gaattcactttgtataccaggctggcctcgaactcagagatccacctgcc
tctgcctccctagtgctgggattaaaggtgtgcgccaccacacccggcag
agctagtgtttcaaacaaaagctctagaagtgtttcagcgtggagggaga
ggcttggcttccaaagcatgggtagccaggctatatcccccctcccccga
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacttagtagatgcacctccaatatcacaagaattcccagca
tcatcaagccatgctctcaatttataacattccttcacaaaataattatt
aagcacctatgtaagggcgccacttattgtccaattaacaaccggcattg
ccccttttctaaatttttaattattttgttacttatttattttgtgtgtg
cacatgtgtatatgtgcatggttttgagtgtgctaccaacaaaggaacaa
cttggagcagttgattttgtccttccatttgttgagtccagggtgaacga
actcagattatcaggcttggtggcaagtactttactcagtgagccgtctc
actggcctgctctttcttaatggaacctagatttctttctccctaacagc
ctttcaccaaacacacacacacacatacacacagagttttattccaaata
gaaaccctactcatttgagacagccagatgatggccagcacctgctaggg
gctgtactcctggactgacccaagcacatttcaaggaaggtacaatagac
acagtcattttttcttttaatgtgaatgacaaagtaactaaggatcctgc
tgtgacctcaaggggaattggcttttgggtgtagatgattagaccagagc
aaagatcagcaggattcaagtcattgatgacattatgaatcattgacctt
tgtatatgataatgtctgtattaaaaattacatttacttatttgtcattg
gggagttatcctagtagggtctgctgtgaagaaaaatcacacacagctac
tcttataaggaaacacttcattggctggttactgtttgttcagggtttag
tacattt
gaattcaaggctagcctggtctacagagcaagtttcaggaccaccaatgc
tacatagagaagaaaccctgtcttgggaaaaaaaatcatgattcatataa
caaaacatgattttcagaaaactggttgaagactcacagtgtcttcaaaa
caagagtaaaggtcttaagaattaaaaataatttgttgggaatcatttgt
ttagcacataaaaggaattttacatagatggaagggccagtgagttgaga
gctgtgcagcgaatgcttaaatgtttgaggatggagtaattacagtttct
gaaaaagccatggtctttattcatctgctctttgttttgctaaaatcatc
atcttgaacaattttccagctagaatttagatagcaactggaattttttc
tctttacactttagaattctggaaagaaggaatatatatatatgtatata
tatatatatacatatatatatatgtatatatatacacatacacacacaca
cgcatatatatacatatatatgtgtgtgtgtatgaattctttgaattcta
gctctatgaattagaattctggaaaaaatatgtgtgtgtatatatatata
tatatatatatatatatatatgcatcattattcaaatgatgaaattagaa
tagcttcaattatttctgttgaaattcttttataatatagactgtggccc
aacagtttttgtgtgagtctctcctatagaatatatatatagcccctttt
cctcgtataactcttttctttataaattgggtgtctctttttattgaaaa
ggctttattagcaaaatgattatagactattctcatccttctagtgtcag
gcaagtatgaagttctagtgctcaggtcacccccgagttacaggagtttc
tgctcttgaacataaattgcagattattattctattaatgttcctaaagt
cactcttttgatgagccataatttctctttagaaaagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55105345_55106465
seq2: B6Ng01-140C04.b_45_1151 (reverse)

seq1  AAATGTACTAAACCCCTGAAACAAACAGTAAACCAGCCCCAATGAAGTGT  50
      |||||||||||| ||||| |||||||||| ||||||  ||||||||||||
seq2  AAATGTACTAAA-CCCTG-AACAAACAGT-AACCAG--CCAATGAAGTGT  45

seq1  TTTCCTTTATAAGAGTAGCTGTGGTTGTGGTGTCTCTTCACAGCAGACCC  100
      ||  | |||||||||||||||||  |||| | | ||||||||||||||||
seq2  TT--CCTTATAAGAGTAGCTGTG--TGTGATTTTTCTTCACAGCAGACCC  91

seq1  TAACTAGGATAACCTCCCAATGACAAATAAGTAAATGTAATTTTTTAAAT  150
      | |||||||||||  ||||||||||||||||||||||||||||||  |||
seq2  T-ACTAGGATAACTCCCCAATGACAAATAAGTAAATGTAATTTTT--AAT  138

seq1  AACAGACATTATCATATACAAAGGTCAATGATTCATAATGTCATCAATGA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACAGACATTATCATATACAAAGGTCAATGATTCATAATGTCATCAATGA  187

seq1  CTTGAATCCTGCTGATCTTTTGCTCTGGTCTAATCATCTACACCCAAAAG  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGAATCCTGCTGATC-TTTGCTCTGGTCTAATCATCTACACCCAAAAG  236

seq1  CCAATTCCCCTTGAGGTCACAGCAGGATCCTTAGTTACTTTGTCATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCCCTTGAGGTCACAGCAGGATCCTTAGTTACTTTGTCATTCAC  286

seq1  ATTAAAAGAAAAAATGACTGTGTCTATTGTACCTTCCTTGAAATGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGAAAAAATGACTGTGTCTATTGTACCTTCCTTGAAATGTGCTT  336

seq1  GGGTCAGTCCAGGAGTACAGCCCCTAGCAGGTGCTGGCCATCATCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTCCAGGAGTACAGCCCCTAGCAGGTGCTGGCCATCATCTGGCT  386

seq1  GTCTCAAATGAGTAGGGTTTCTATTTGGAATAAAACTCTGTGTGTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAATGAGTAGGGTTTCTATTTGGAATAAAACTCTGTGTGTATGTG  436

seq1  TGTGTGTGTGTTTGGTGAAAGGCTGTTAGGGAGAAAGAAATCTAGGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTGGTGAAAGGCTGTTAGGGAGAAAGAAATCTAGGTTCC  486

seq1  ATTAAGAAAGAGCAGGCCAGTGAGACGGCTCACTGAGTAAAGTACTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAAGAGCAGGCCAGTGAGACGGCTCACTGAGTAAAGTACTTGCC  536

seq1  ACCAAGCCTGATAATCTGAGTTCGTTCACCCTGGACTCAACAAATGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCTGATAATCTGAGTTCGTTCACCCTGGACTCAACAAATGGAAG  586

seq1  GACAAAATCAACTGCTCCAAGTTGTTCCTTTGTTGGTAGCACACTCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATCAACTGCTCCAAGTTGTTCCTTTGTTGGTAGCACACTCAAAA  636

seq1  CCATGCACATATACACATGTGCACACACAAAATAAATAAGTAACAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACATATACACATGTGCACACACAAAATAAATAAGTAACAAAATA  686

seq1  ATTAAAAATTTAGAAAAGGGGCAATGCCGGTTGTTAATTGGACAATAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTTAGAAAAGGGGCAATGCCGGTTGTTAATTGGACAATAAGT  736

seq1  GGCGCCCTTACATAGGTGCTTAATAATTATTTTGTGAAGGAATGTTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCCTTACATAGGTGCTTAATAATTATTTTGTGAAGGAATGTTATAA  786

seq1  ATTGAGAGCATGGCTTGATGATGCTGGGAATTCTTGTGATATTGGAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGCATGGCTTGATGATGCTGGGAATTCTTGTGATATTGGAGGTG  836

seq1  CATCTACTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  886

seq1  GTGTGTGTGTGTGTGTGTGTGTCGGGGGAGGGGGGATATAGCCTGGCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTCGGGGGAGGGGGGATATAGCCTGGCTAC  936

seq1  CCATGCTTTGGAAGCCAAGCCTCTCCCTCCACGCTGAAACACTTCTAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTTGGAAGCCAAGCCTCTCCCTCCACGCTGAAACACTTCTAGAG  986

seq1  CTTTTGTTTGAAACACTAGCTCTGCCGGGTGTGGTGGCGCACACCTTTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTGAAACACTAGCTCTGCCGGGTGTGGTGGCGCACACCTTTAA  1036

seq1  TCCCAGCACTAGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTAGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAG  1086

seq1  CCTGGTATACAAAGTGAATTC  1121
      |||||||||||||||||||||
seq2  CCTGGTATACAAAGTGAATTC  1107

seq1: chr4_54955967_54957000
seq2: B6Ng01-140C04.g_66_1055

seq1  GAATTCAAGGCTAGCCTGGTCTACAGAGCAAGTTTCAGGACCACCAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGCCTGGTCTACAGAGCAAGTTTCAGGACCACCAATGC  50

seq1  TACATAGAGAAGAAACCCTGTCTTGGGAAAAAAAATCATGATTCATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAAGAAACCCTGTCTTGGGAAAAAAAATCATGATTCATATAA  100

seq1  CAAAACATGATTTTCAGAAAACTGGTTGAAGACTCACAGTGTCTTCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATGATTTTCAGAAAACTGGTTGAAGACTCACAGTGTCTTCAAAA  150

seq1  CAAGAGTAAAGGTCTTAAGAATTAAAAATAATTTGTTGGGAATCATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAAAGGTCTTAAGAATTAAAAATAATTTGTTGGGAATCATTTGT  200

seq1  TTAGCACATAAAAGGAATTTTACATAGATGGAAGGGCCAGTGAGTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACATAAAAGGAATTTTACATAGATGGAAGGGCCAGTGAGTTGAGA  250

seq1  GCTGTGCAGCGAATGCTTAAATGTTTGAGGATGGAGTAATTACAGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAGCGAATGCTTAAATGTTTGAGGATGGAGTAATTACAGTTTCT  300

seq1  GAAAAAGCCATGGTCTTTATTCATCTGCTCTTTGTTTTGCTAAAATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCCATGGTCTTTATTCATCTGCTCTTTGTTTTGCTAAAATCATC  350

seq1  ATCTTGAACAATTTTCCAGCTAGAATTTAGATAGCAACTGGAATTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAACAATTTTCCAGCTAGAATTTAGATAGCAACTGGAATTTTTTC  400

seq1  TCTTTACACTTTAGAATTCTGGAAAGAAGGAATATATATATATGTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACACTTTAGAATTCTGGAAAGAAGGAATATATATATATGTATATA  450

seq1  TATATATATACATATATATATATGTATATATATACACATACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATACATATATATATATGTATATATATACACATACACACACACA  500

seq1  CGCATATATATACATATATATGTGTGTGTGTATGAATTCTTTGAATTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATATATATACATATATATGTGTGTGTGTATGAATTCTTTGAATTCTA  550

seq1  GCTCTATGAATTAGAATTCTGGAAAAAATATGTGTGTGTATATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATGAATTAGAATTCTGGAAAAAATATGTGTGTGTATATATATATA  600

seq1  TATATATATATATATATATATGCATCATTATTCAAATGATGAAATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATGCATCATTATTCAAATGATGAAATTAGAA  650

seq1  TAGCTTCAATTATTTCTGTTGAAATTCTTTT-TAATATAGACTGTGGCCC  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGCTTCAATTATTTCTGTTGAAATTCTTTTATAATATAGACTGTGGCCC  700

seq1  AACAGTTTTTGTTTAAGTCTCTCCTATAGAATTAATAGA-AGCCCCTTTC  748
      |||||||||||| | |||||||||||||||||  ||| | ||||||||| 
seq2  AACAGTTTTTGTGTGAGTCTCTCCTATAGAATATATATATAGCCCCTTTT  750

seq1  CCTCGATAAACACTTTTCTTTAAGAAATTGGGTGTCTTCTTTTTATTTGA  798
      |||||   ||| ||||||||| | |||||||||||| |||||||| ||||
seq2  CCTCGTATAACTCTTTTCTTT-ATAAATTGGGTGTC-TCTTTTTA-TTGA  797

seq1  AAAGGCCTTATTAAGCAAAATGATTTATAGACTATCCCCATCCTCCTAGT  848
      |||||| ||||| |||||||||| ||||||||||| | |||||| |||||
seq2  AAAGGCTTTATT-AGCAAAATGA-TTATAGACTATTCTCATCCTTCTAGT  845

seq1  GTCAGGCAAGTATGAAGGTCCTAGTTGCTCAGGTCACCCC--GGTTACAG  896
      |||||||||||||||| || |||| |||||||||||||||   |||||||
seq2  GTCAGGCAAGTATGAA-GTTCTAG-TGCTCAGGTCACCCCCGAGTTACAG  893

seq1  GAGTTCCGCTTCTTGAACTAAAATTGCAAGATTTATTATTCTATTAATGT  946
      ||||| |   ||||||||  ||||||| ||| ||||||||||||||||||
seq2  GAGTTTCTGCTCTTGAACATAAATTGC-AGA-TTATTATTCTATTAATGT  941

seq1  TCATAAAGTCACTCTTTTGATGAGCCATAATTTCTCTTTATGAAGAGTCT  996
      || ||||||||||||||||||||||||||||||||||||| ||| |||| 
seq2  TCCTAAAGTCACTCTTTTGATGAGCCATAATTTCTCTTTA-GAAAAGTCC  990

seq1  GTGTGCCAGTCACTTGTGACATAGGAGAAGAAAAGTCC  1034
                                            
seq2  --------------------------------------  990