BAC Information

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BAC

Clone NameB6Ng01-140G12
Chromosome4 (Build37)
Map Location 112,368,534 - 112,518,311
singlet/doubletdoublet
Overlap geneLOC100040581, A030001H23Rik
Upstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540
Downstream geneLOC433745, LOC545668, LOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G12.bB6Ng01-140G12.g
ACCDH939145DH939146
length1,011747
definitionDH939145|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G12, 5' end.DH939146|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,517,310 - 112,518,311)(112,368,534 - 112,369,056)
sequence
gaattcctctacaaactttatttcctaatacttgatagaaaatgattaag
acaactgctattatactaccctttgtactgagatagacaaggaaactttt
gctttattgtacctacttactccaaaaacagatatctgataaagagcttg
tcaggggtatcttaaatagttcaactctatctcaatatttgtgtaagaaa
tggctttgtgcaataaccacttgaaatactgcatagaaaaattatccaat
aaattagtattattgaatggatgataacttgttggaagcttttgataaag
cttcctcaaaaaaaaaataattgttaagctgggcagtgatggtacattcc
tttaatcccagcacttgggaggcagagcaaacagactattgaattggagg
ccagcctggtctacagagtgagttcaaggacaaccaggactacacagaga
aaaacctgtcttgaaaaaccaaaataagtaaatgaataaataaataaata
aataaatgaaggaaaagaaaagatctttaagaaatcaaaaataaacctag
tattctcaatatgaaaatttgatatgattgaatataaagaggccatgcag
aagattatatttgatatctgtgatcagagtagtgaaaattgtgcatgaac
ataaagtatggcagcacggtggtgttcaacttaggtataaatatggtgaa
aatagaataattcaatgaatattagcatttcagccatggaaatcctctac
aaactttattatctagtacttgataaaaatttttaaataactgctttttt
actaccctatgtactgataaagacaaagaaaattctactctattgtacat
aattacccaataaactgatagtagaggaatggtgtttttttggagaatgc
taaatagacaaactctatggcaatattgagctagaaaagacattgggcaa
taactaccaaacataatttatagataaatactcggtaattagttattata
tggatggattt
gaattctgtttagctctgcactccatttttttttagatattttctttatt
tacatttcaaatgttattccctttcctagattcccctccaaaaatctcct
atccccccctccccctgcttcccaacccacccacttccattcctagtcct
ggcattcccctatactagggcatacagccttcacaggaccaagggcctct
ccttccattgatgatcatcctctgctacatatatagtcacaagttccacc
atgtgttttctttgattggtggtatagttccaaggagctttgcaggtatt
ggttagttcatattgttgttcctcctatggggctgcaaaccttttcagct
ctctgggtatttctctagatccttcattgggaatcttgtgctccgtccaa
tggatgactgtgagcatccacttctctatttgccaggcactggcagagcc
tcccaggagacagctatactaggctcctgtaagcaggctatttttggcat
ctgcctattgtctgggtttggtggttgtttatggggtggatccgcaagtg
gagcaagccctggatcgtcgtttcttctggctctgctctgaattctgaat
tctgtctccataactccttccttagctctgtactccatttttaattgggt
tatttgctttttctggagactaacttcttgagttctaggtataattttga
gtattagctctctatcgaatttagggttggtaaagattctttcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_112517310_112518311
seq2: B6Ng01-140G12.b_62_1058 (reverse)

seq1  AAATACCATCCATATAATAAACCTAATTAACCGAGGTATTTATCTATAAA  50
      |||| |||||||||||||||  |||||| ||||| |||||||||||||||
seq2  AAAT-CCATCCATATAATAA--CTAATT-ACCGA-GTATTTATCTATAAA  45

seq1  TTATGTTTGGTAGTTATTGCCCAATGTCTTTTCTAGCTCAAATATTGCCA  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTATGTTTGGTAGTTATTGCCCAATGTCTTTTCTAGCTC-AATATTGCCA  94

seq1  TAGAGTTTGTCTATTTAGCATTCTCC-ATAAAACACCATTCCTCTACTAT  149
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  TAGAGTTTGTCTATTTAGCATTCTCCAAAAAAACACCATTCCTCTACTAT  144

seq1  CAGTTTATTGGGTAATTATGTACAATAGAGTAGAATTTTCTTTGTCTTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTGGGTAATTATGTACAATAGAGTAGAATTTTCTTTGTCTTTA  194

seq1  TCAGTACATAGGGTAGTAAAAAAGCAGTTATTTAAAAATTTTTATCAAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACATAGGGTAGTAAAAAAGCAGTTATTTAAAAATTTTTATCAAGT  244

seq1  ACTAGATAATAAAGTTTGTAGAGGATTTCCATGGCTGAAATGCTAATATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAATAAAGTTTGTAGAGGATTTCCATGGCTGAAATGCTAATATT  294

seq1  CATTGAATTATTCTATTTTCACCATATTTATACCTAAGTTGAACACCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATTATTCTATTTTCACCATATTTATACCTAAGTTGAACACCACC  344

seq1  GTGCTGCCATACTTTATGTTCATGCACAATTTTCACTACTCTGATCACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCATACTTTATGTTCATGCACAATTTTCACTACTCTGATCACAG  394

seq1  ATATCAAATATAATCTTCTGCATGGCCTCTTTATATTCAATCATATCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAATATAATCTTCTGCATGGCCTCTTTATATTCAATCATATCAAA  444

seq1  TTTTCATATTGAGAATACTAGGTTTATTTTTGATTTCTTAAAGATCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTGAGAATACTAGGTTTATTTTTGATTTCTTAAAGATCTTTT  494

seq1  CTTTTCCTTCATTTATTTATTTATTTATTTATTCATTTACTTATTTTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTCATTTATTTATTTATTTATTTATTCATTTACTTATTTTGGT  544

seq1  TTTTCAAGACAGGTTTTTCTCTGTGTAGTCCTGGTTGTCCTTGAACTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGGTTTTTCTCTGTGTAGTCCTGGTTGTCCTTGAACTCAC  594

seq1  TCTGTAGACCAGGCTGGCCTCCAATTCAATAGTCTGTTTGCTCTGCCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGCTGGCCTCCAATTCAATAGTCTGTTTGCTCTGCCTCC  644

seq1  CAAGTGCTGGGATTAAAGGAATGTACCATCACTGCCCAGCTTAACAATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGGGATTAAAGGAATGTACCATCACTGCCCAGCTTAACAATTA  694

seq1  TTTTTTTTTTGAGGAAGCTTTATCAAAAGCTTCCAACAAGTTATCATCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGAGGAAGCTTTATCAAAAGCTTCCAACAAGTTATCATCCA  744

seq1  TTCAATAATACTAATTTATTGGATAATTTTTCTATGCAGTATTTCAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAATACTAATTTATTGGATAATTTTTCTATGCAGTATTTCAAGTG  794

seq1  GTTATTGCACAAAGCCATTTCTTACACAAATATTGAGATAGAGTTGAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCACAAAGCCATTTCTTACACAAATATTGAGATAGAGTTGAACT  844

seq1  ATTTAAGATACCCCTGACAAGCTCTTTATCAGATATCTGTTTTTGGAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATACCCCTGACAAGCTCTTTATCAGATATCTGTTTTTGGAGTA  894

seq1  AGTAGGTACAATAAAGCAAAAGTTTCCTTGTCTATCTCAGTACAAAGGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTACAATAAAGCAAAAGTTTCCTTGTCTATCTCAGTACAAAGGGT  944

seq1  AGTATAATAGCAGTTGTCTTAATCATTTTCTATCAAGTATTAGGAAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATAGCAGTTGTCTTAATCATTTTCTATCAAGTATTAGGAAATAA  994

seq1  AGT  1002
      |||
seq2  AGT  997

seq1: chr4_112368534_112369056
seq2: B6Ng01-140G12.g_67_589

seq1  GAATTCTGTTTAGCTCTGCACTCCATTTTTTTTTAGATATTTTCTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGCTCTGCACTCCATTTTTTTTTAGATATTTTCTTTATT  50

seq1  TACATTTCAAATGTTATTCCCTTTCCTAGATTCCCCTCCAAAAATCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGTTATTCCCTTTCCTAGATTCCCCTCCAAAAATCTCCT  100

seq1  ATCCCCCCCTCCCCCTGCTTCCCAACCCACCCACTTCCATTCCTAGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCCCTCCCCCTGCTTCCCAACCCACCCACTTCCATTCCTAGTCCT  150

seq1  GGCATTCCCCTATACTAGGGCATACAGCCTTCACAGGACCAAGGGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCCCTATACTAGGGCATACAGCCTTCACAGGACCAAGGGCCTCT  200

seq1  CCTTCCATTGATGATCATCCTCTGCTACATATATAGTCACAAGTTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATTGATGATCATCCTCTGCTACATATATAGTCACAAGTTCCACC  250

seq1  ATGTGTTTTCTTTGATTGGTGGTATAGTTCCAAGGAGCTTTGCAGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTCTTTGATTGGTGGTATAGTTCCAAGGAGCTTTGCAGGTATT  300

seq1  GGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAACCTTTTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAACCTTTTCAGCT  350

seq1  CTCTGGGTATTTCTCTAGATCCTTCATTGGGAATCTTGTGCTCCGTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTATTTCTCTAGATCCTTCATTGGGAATCTTGTGCTCCGTCCAA  400

seq1  TGGATGACTGTGAGCATCCACTTCTCTATTTGCCAGGCACTGGCAGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGACTGTGAGCATCCACTTCTCTATTTGCCAGGCACTGGCAGAGCC  450

seq1  TCCCAGGAGACAGCTATACTAGGCTCCTGTAAGCAGGCTATTTTTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAGACAGCTATACTAGGCTCCTGTAAGCAGGCTATTTTTGGCAT  500

seq1  CTGCCTATTGTCTGGGTTTGGTG  523
      |||||||||||||||||||||||
seq2  CTGCCTATTGTCTGGGTTTGGTG  523