BAC Information

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BAC

Clone NameB6Ng01-141E06
Chromosome4 (Build37)
Map Location 88,689,711 - 88,831,595
singlet/doubletdoublet
Overlap geneLOC100040617, Mtap
Upstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
Downstream geneLOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E06.bB6Ng01-141E06.g
ACCDH939766DH939767
length1,0511,064
definitionDH939766|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E06, 5' end.DH939767|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,830,542 - 88,831,595)(88,689,711 - 88,690,788)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtattttttcatcccggatttcagcaccaat
tgttaatagacgcgttctcacgcccggccaggaagaacacaacagaccag
aatcttctgcggcaaaactttattgcttacatcttcaggagcaagagtgt
aagaagcaagagagagagaaaacgaaaccccgtccctattaaggagaatt
atccttcgcctaggacgtgtcactccctgattggctgcagcccatcggcc
gagttgatgtcacggggaaggcagagcacatggagtggagaaccaccctc
ggcacatgcgcagattatttgtttaccacttagaacacagctgtcagcgc
catcttgtaacggcgaatgtgggcgcggctcccaacagactctggggtga
aggacccattgaaatatccaccataatcttttgtcgtgagctgaattgtt
acttagaggagggcagaccctgcactgcctccagagttgtaatcacgctg
gccatcagacttaaaacctgctgagaagctctgatctacactaatggttc
ttactcattccttatcttcaaatgtgttaagagtgaaagaaggaaaaagg
ctagtgcttattgtacactgcacacaggacagcttttaatagctgttgta
taacagtttgcctttttctctagcttgttgtccaaagcgcaccaaaccac
actcctcaaataaaaaaaaaaaacaagagtattattattttcttaaaata
attactccaagatctggcttatgagttaaaaaaaaggggacagagttaag
gtttgtgaattattacgaattattttttagttgagggcttgaagtgagac
ctttttctttaaccaagagaatgatagtcactttatgagtgtagatacat
tgtaagggccatgtagatgattcaggataagacctctcattcatgtctga
c
gaattcaaaataatttccttcctgtcctaccaaattgttaaacttgaaac
tggctacttcaaattttactttgaggtaagacaagcagaacaagtgagac
tccaccaaagtggagttgtgaacaacatctttccagtaacataagaaata
acataagaaaaataacataagaaatactagaattgaggccacacatcaat
gactcctggagtcacactaaggtcagctgaagctctggtgtctggtgaga
gatatgcatgcttctctcccacttgtacacccttttgtccagatgccagg
agtgttgtctcattgtacttctggttagccgtctatctgctttcttcagg
caggaagaaaaacagagaaagtcaaaaggatgtggtctgtgtgagtactc
cttatctcataattcagactctgtgtgtagggtatggtgcaagaaaagag
aatgtgagtcagatagatactctgacatacatttgctactagtaagaggt
atatgcatcaattcaccttattttgactaactctatcctaccatcaaatg
acaaagtccagtgtatgaaactctgtatgcacatattcatttataactat
ttttagtacatcagtaaaattttatatcactcatgcataattaaggaagg
agattgtagagctaaataataatgctaaaagctttgtttcttagccagcc
catctgtctctcatctaaaggatagttaataaagggtaaatgagtgcaag
cattactattgagtaacataaagtcctctatgattataagatattaaaaa
tattgtgttttaccaaaaaaaaaaaaagcaaaagcaagatagtcaaaaca
tctagaataaaagaaagaactgttgagttatccatcatccctgatatcaa
gttgtacaacagggctacagtgataaaaaccactgggattggcataaaac
agataggttgattatgaaatcagttaaagactcgacataattctcgactt
taggacaatgtttggttgctttttataagaagtcagaatatccatggaaa
aaaaaagaaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88830542_88831595
seq2: B6Ng01-141E06.b_47_1097 (reverse)

seq1  GTCAGACATGGAATTGAGAGTCCTTATCCCCTGAATCATCTCACTGGCCC  50
      ||||||||||  | ||||||  |||||  |||||||||||| ||  | ||
seq2  GTCAGACATG--AATGAGAGGTCTTAT--CCTGAATCATCT-ACATGGCC  45

seq1  CTTAC-ATGTATCCTACACTTCATTAGAGTGACTGTCTATCTCTTTGGTA  99
      ||||| |||||| |||||| ||| || ||||||| ||  |||||| | ||
seq2  CTTACAATGTAT-CTACAC-TCA-TAAAGTGACTATCATTCTCTTGGTTA  92

seq1  CAGGGAAA-GTCTCCACCTTCAAGCCCTC-ACT-AAATATAATTCGT-AT  145
       ||  ||| |||||   |||||||||||| ||| ||| ||||||||| ||
seq2  AAGAAAAAGGTCTC--ACTTCAAGCCCTCAACTAAAAAATAATTCGTAAT  140

seq1  AATTCACAAACCTT-ACTCTTGTCCCCTTTTTTTTAACTCATAAGCCAGA  194
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  AATTCACAAACCTTAACTC-TGTCCCCTTTTTTTTAACTCATAAGCCAGA  189

seq1  TCTTGG-GTAATTA-TTTAAG-AAATAATAATACTCTTGTTTTTTTTTTT  241
      |||||| ||||||| |||||| ||||||||||||||||| ||||||||||
seq2  TCTTGGAGTAATTATTTTAAGAAAATAATAATACTCTTG-TTTTTTTTTT  238

seq1  TTATTTGAGGAGTGTGGTTTGGTGCGCTTTGGACAACAAGCTAGAGAAAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGGAGTGTGGTTTGGTGCGCTTTGGACAACAAGCTAGAGAAAA  288

seq1  AGGCAAACTGTTATACAACAGCTATTAAAAGCTGTCCTGTGTGCAGTGTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACTGTTATACAACAGCTATTAAAAGCTGTCCTGTGTGCAGTGTA  338

seq1  CAATAAGCACTAGCCTTTTTCCTTCTTTCACTCTTAACACATTTGAAGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCACTAGCCTTTTTCCTTCTTTCACTCTTAACACATTTGAAGAT  388

seq1  AAGGAATGAGTAAGAACCATTAGTGTAGATCAGAGCTTCTCAGCAGGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGAGTAAGAACCATTAGTGTAGATCAGAGCTTCTCAGCAGGTTT  438

seq1  TAAGTCTGATGGCCAGCGTGATTACAACTCTGGAGGCAGTGCAGGGTCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGATGGCCAGCGTGATTACAACTCTGGAGGCAGTGCAGGGTCTG  488

seq1  CCCTCCTCTAAGTAACAATTCAGCTCACGACAAAAGATTATGGTGGATAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTAAGTAACAATTCAGCTCACGACAAAAGATTATGGTGGATAT  538

seq1  TTCAATGGGTCCTTCACCCCAGAGTCTGTTGGGAGCCGCGCCCACATTCG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGGTCCTTCACCCCAGAGTCTGTTGGGAGCCGCGCCCACATTCG  588

seq1  CCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTACAAGATGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAAT  638

seq1  CTGCGCATGTGCCGAGGGTGGTTCTCCACTCCATGTGCTCTGCCTTCCCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCATGTGCCGAGGGTGGTTCTCCACTCCATGTGCTCTGCCTTCCCC  688

seq1  GTGACATCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGTC  738

seq1  CTAGGCGAAGGATAATTCTCCTTAATAGGGACGGGGTTTCGTTTTCTCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCGAAGGATAATTCTCCTTAATAGGGACGGGGTTTCGTTTTCTCTC  788

seq1  TCTCTTGCTTCTTACACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTTCTTACACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTT  838

seq1  GCCGCAGAAGATTCTGGTCTGTTGTGTTCTTCCTGGCCGGGCGTGAGAAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCAGAAGATTCTGGTCTGTTGTGTTCTTCCTGGCCGGGCGTGAGAAC  888

seq1  GCGTCTATTAACAATTGGTGCTGAAATCCGGGATGAAAAAATACGAGAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTATTAACAATTGGTGCTGAAATCCGGGATGAAAAAATACGAGAAA  938

seq1  AAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGGACTGGCGCAAGGAAGATCCCTCATTCCAGAACCAGAACTGC  988

seq1  GGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAAGGATTCA  1038

seq1  ACTGTATGAATTC  1054
      |||||||||||||
seq2  ACTGTATGAATTC  1051

seq1: chr4_88689711_88690788
seq2: B6Ng01-141E06.g_68_1131

seq1  GAATTCAAAATAATTTCCTTCCTGTCCTACCAAATTGTTAAACTTGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAATTTCCTTCCTGTCCTACCAAATTGTTAAACTTGAAAC  50

seq1  TGGCTACTTCAAATTTTACTTTGAGGTAAGACAAGCAGAACAAGTGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACTTCAAATTTTACTTTGAGGTAAGACAAGCAGAACAAGTGAGAC  100

seq1  TCCACCAAAGTGGAGTTGTGAACAACATCTTTCCAGTAACATAAGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAAAGTGGAGTTGTGAACAACATCTTTCCAGTAACATAAGAAATA  150

seq1  ACATAAGAAAAATAACATAAGAAATACTAGAATTGAGGCCACACATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGAAAAATAACATAAGAAATACTAGAATTGAGGCCACACATCAAT  200

seq1  GACTCCTGGAGTCACACTAAGGTCAGCTGAAGCTCTGGTGTCTGGTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGGAGTCACACTAAGGTCAGCTGAAGCTCTGGTGTCTGGTGAGA  250

seq1  GATATGCATGCTTCTCTCCCACTTGTACACCCTTTTGTCCAGATGCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCATGCTTCTCTCCCACTTGTACACCCTTTTGTCCAGATGCCAGG  300

seq1  AGTGTTGTCTCATTGTACTTCTGGTTAGCCGTCTATCTGCTTTCTTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTCTCATTGTACTTCTGGTTAGCCGTCTATCTGCTTTCTTCAGG  350

seq1  CAGGAAGAAAAACAGAGAAAGTCAAAAGGATGTGGTCTGTGTGAGTACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAAAAACAGAGAAAGTCAAAAGGATGTGGTCTGTGTGAGTACTC  400

seq1  CTTATCTCATAATTCAGACTCTGTGTGTAGGGTATGGTGCAAGAAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCATAATTCAGACTCTGTGTGTAGGGTATGGTGCAAGAAAAGAG  450

seq1  AATGTGAGTCAGATAGATACTCTGACATACATTTGCTACTAGTAAGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGTCAGATAGATACTCTGACATACATTTGCTACTAGTAAGAGGT  500

seq1  ATATGCATCAATTCACCTTATTTTGACTAACTCTATCCTACCATCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATCAATTCACCTTATTTTGACTAACTCTATCCTACCATCAAATG  550

seq1  ACAAAGTCCAGTGTATGAAACTCTGTATGCACATATTCATTTATAACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCCAGTGTATGAAACTCTGTATGCACATATTCATTTATAACTAT  600

seq1  TTTTAGTACATCAGTAAAATTTTATATCACTCATGCATAATTAAGGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTACATCAGTAAAATTTTATATCACTCATGCATAATTAAGGAAGG  650

seq1  AGATTGTAGAGCTAAATAATAATGCTAAAAGCTTTGTTTCTTAGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTAGAGCTAAATAATAATGCTAAAAGCTTTGTTTCTTAGCCAGCC  700

seq1  CATCTGTCTCTCACCTAAAGGATAGTTAATAAAGGGTAAATGAGTGCAAG  750
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCTCTCATCTAAAGGATAGTTAATAAAGGGTAAATGAGTGCAAG  750

seq1  CATTACTATTGAGTAACATAAAGTCCTCTATGATTTATAAGATATTAAAA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTACTATTGAGTAACATAAAGTCCTCTATGA-TTATAAGATATTAAAA  799

seq1  ATATTGTGTTTTTACCAAAAAAAAAAAAAGCAAAAGCAAGATAGCCAAAA  850
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ATATTGTG-TTTTACCAAAAAAAAAAAAAGCAAAAGCAAGATAGTCAAAA  848

seq1  CAATCCAGAA-CAAAGAAAGAACTGTTGAAGTTAT-CACCATCCCTGATA  898
      | ||| ||||  |||||||||||||||| |||||| || |||||||||||
seq2  C-ATCTAGAATAAAAGAAAGAACTGTTG-AGTTATCCATCATCCCTGATA  896

seq1  TCAAGTTGTACAACAGGGCTACAGTGATAAAAACCACTTGGAATTGGCAT  948
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TCAAGTTGTACAACAGGGCTACAGTGATAAAAACCAC-TGGGATTGGCAT  945

seq1  AAAAACAGATAGGTTGATTAATGAAATCAAGTTAAAGACCCAGACATAAA  998
       |||||||||||||||||| |||||||| |||||||||| | ||||||| 
seq2  -AAAACAGATAGGTTGATT-ATGAAATC-AGTTAAAGACTC-GACATAAT  991

seq1  TCCACAGACCTATGAACACATGTTTGTTTGCTTTTTATAAAGAAGTCAGA  1048
      ||    ||| |  | ||| ||||||| ||||||||||| |||||||||| 
seq2  TC--TCGACTTTAGGACA-ATGTTTGGTTGCTTTTTAT-AAGAAGTCAG-  1036

seq1  AATACACAATGAAAAAAAAAAAGAAAAAGA  1078
      ||||  ||  |  |||||||||||||||||
seq2  AATATCCATGG--AAAAAAAAAGAAAAAGA  1064