BAC Information

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BAC

Clone NameB6Ng01-142L08
Chromosome4 (Build37)
Map Location 43,045,233 - 43,182,498
singlet/doubletdoublet
Overlap geneB230312A22Rik, Unc13b
Upstream geneLOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2
Downstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142L08.bB6Ng01-142L08.g
ACCDH940835DH940836
length1,2321,119
definitionDH940835|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L08, 5' end.DH940836|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,181,271 - 43,182,498)(43,045,233 - 43,046,402)
sequence
gaattcagaatgcccaagtttagaacagataagtacacccaaaagaagta
ttaaaagatttcaagaatcctatatttgttgatgtgtttgagtctaaaaa
gaaatctaaatgttaacttgctgaatgttatatttgaggctgtatataca
agattatagccaaatgtgtatctttaaaaaaagaaaacatgcattccaaa
aataatttttggctatcagaagtataacactaccaaacgagcaaattatt
taaagcagtgtaattttttgcttgtgaatccaaaagaactgaggtcataa
aggacaatgcctccccatggtgattattgcaaactccaggtccagtttaa
atcagtgagtacagaagccagttgacccttcattcatcaggaactgccta
ctttttctatttctacacagaaggggtccacagactaggaggttttcagc
ttagtatgttctcttaggtatcagatacttacttaagaaataggaacaca
gtcaggcttggtggtacctttaatgccagtagaaaggaggctgaggcaga
tagatctctatgagtctgaggccagcttggtctacatagtgagttccagg
acagccagggctatgcagtgagacctttctcaaaccactaagcaagcaaa
caaagaggaaaaaaagtaataggaatgcaggacacagtggtcatgtagcc
actgaaagtctttcctggttgagaatggcagtgtcttaactcctttcaac
actaaatttagactcagctaaatgatagtgaacacagaaagactcgaatg
tcaaacatcaaattaaataaaatccctgttattctgcattctctaaaatg
gccaagtaaagaaatcaacacacacacacacacacacacacacacacaca
cacacactttttgtttgttttaaagtctgggactgactatgtagcacttg
ctgtcctggcacttgatgtgtagaacagctggctttgaacccacagagct
ccactggtttcctacctcctgcgtgctgggactaaaggcgtataatcaca
aacatctggcttaaaccaacacatggtttagaccacagttttatactcct
tcaatgaagttcaataacctctcctccatcacctctcaaacaccagccta
actcctaacatgggaaagaatcttttattgtacaaaataaacctacacag
acacgcccatagcctatagtaatgaattttta
cctttaggccccacatctccatcctcttgaacacaaaaaaaagtagaggt
tagttcaagtttccaaacaagaatttattcttttttttttccttaaaaaa
tgtaccaggtacaatttttcccatttttttgtttgtttgttttgtttttc
aagtttcagcaaatgcttgttcccctcagccaagccccaagagttaaggg
ttgaggctgggtcagagtcttaagtgaggagtggagtaactgggaaccat
gtgactgaatgaggggcacccctcatcccagctgaggtaggtgggtcaga
gtctggtcaggtgagaggaggttccccagtccttaggcctgactctgtcc
ctggacaccttcctcagtcaggacaccaaagcaaggagacacaggcagga
ggagagggacaagtgagtctgagccctaggtaagaggtggctaaacccct
gtgttacacatacatgcacattctgtctctctctcacacacacaccctac
acaaacccaagtttgtatgcacgcacacagctgtacacacacacacacac
acacacacacacaccacacatacaggctttcgaagatgggttgaagggca
ggaaagggaaaaggaatagagaaagccgagggaagctgagtctttggcta
agtgactcagttcctctggaataaaccctctgcccttagccagaggagag
cagctctccccttgccccgacatcagcttcttcaagtcctgaggttggag
caatatctgagagtggggtgatgccaattatcagtttgggaggtcaccaa
ggcaatccaatttgaataattataaattaaaataataaataataagtggc
cctgcccaggacagggaggcaacgctggcattacttgcctgggaacttgg
acatctcaggtagctctgttcctccctaactactagctggctgggaaccc
aggaggggacaggcacatgagtaccagagcagaagggtatggagacgagc
tttaacaccaatagtcatttggcgtgagcgggatgaggactttatcagct
gagggctcctcgcattctccagttactgtcagatggtagacgagcagctg
ccactaggttcaggagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43181271_43182498
seq2: B6Ng01-142L08.b_47_1278 (reverse)

seq1  TAAAAATAATTTCATTTACTATA-GCTATGG--CTGTC--TGTAGGTTTA  45
      ||||||    |||| |||||||| |||||||   ||||  ||||||||||
seq2  TAAAAA----TTCA-TTACTATAGGCTATGGGCGTGTCTGTGTAGGTTTA  45

seq1  TTTTGTAACAAT-AAAGATTCTTT-CCATGTTA-GAGTTATGCTTGGGTT  92
      |||||| ||||| ||||||||||| |||||||| |||||| ||| | |  
seq2  TTTTGT-ACAATAAAAGATTCTTTCCCATGTTAGGAGTTAGGCTGGTG--  92

seq1  GTTTTGAGA-GTGAT-GAAGAGA-GTAATGAAACTTCATTGGA-GAGTAA  138
        ||||||| ||||| || |||| || ||  |||||||||| | |||| |
seq2  --TTTGAGAGGTGATGGAGGAGAGGTTATTGAACTTCATTGAAGGAGT-A  139

seq1  TAAAACTGT-GTCTAAACCATGTGTT-GTTTAAGCCAGATG-TTGTGA-T  184
      ||||||||| |||||||||||||||| |||||||||||||| |||||| |
seq2  TAAAACTGTGGTCTAAACCATGTGTTGGTTTAAGCCAGATGTTTGTGATT  189

seq1  ATACGCCTTTAGTCCCAGCACGCAGGA-GTAGGAAACCAGTGGAGCTCTG  233
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACGCCTTTAGTCCCAGCACGCAGGAGGTAGGAAACCAGTGGAGCTCTG  239

seq1  TGGGTTCAAAGCCAGCCTGTTCTACACATCAAGTGCCAGGACAGCAAGTG  283
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAAAGCCAG-CTGTTCTACACATCAAGTGCCAGGACAGCAAGTG  288

seq1  CTACATAGTCAGTCCCAGACTTTAAAAACAAACAAAAAGTGTGTGTGTGT  333
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTACATAGTCAGTCCCAGACTTT-AAAACAAACAAAAAGTGTGTGTGTGT  337

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTGATTTCTTTACTTGGCCATTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTGATTTCTTTACTTGGCCATTT  387

seq1  TAGAGAATGCAGAATAACAGGGATTTTATTTAATTTGATGTTTGACATTC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATGCAGAATAACAGGGATTTTATTTAATTTGATGTTTGACATTC  437

seq1  GAGTCTTTCTGTGTTCACTATCATTTAGCTGAGTCTAAATTTAGTGTTGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTCTGTGTTCACTATCATTTAGCTGAGTCTAAATTTAGTGTTGA  487

seq1  AAGGAGTTAAGACACTGCCATTCTCAACCAGGAAAGACTTTCAGTGGCTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTAAGACACTGCCATTCTCAACCAGGAAAGACTTTCAGTGGCTA  537

seq1  CATGACCACTGTGTCCTGCATTCCTATTACTTTTTTTCCTCTTTGTTTGC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCACTGTGTCCTGCATTCCTATTACTTTTTTTCCTCTTTGTTTGC  587

seq1  TTGCTTAGTGGTTTGAGAAAGGTCTCACTGCATAGCCCTGGCTGTCCTGG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGTGGTTTGAGAAAGGTCTCACTGCATAGCCCTGGCTGTCCTGG  637

seq1  AACTCACTATGTAGACCAAGCTGGCCTCAGACTCATAGAGATCTATCTGC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTATGTAGACCAAGCTGGCCTCAGACTCATAGAGATCTATCTGC  687

seq1  CTCAGCCTCCTTTCTACTGGCATTAAAGGTACCACCAAGCCTGACTGTGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCCTTTCTACTGGCATTAAAGGTACCACCAAGCCTGACTGTGT  737

seq1  TCCTATTTCTTAAGTAAGTATCTGATACCTAAGAGAACATACTAAGCTGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTCTTAAGTAAGTATCTGATACCTAAGAGAACATACTAAGCTGA  787

seq1  AAACCTCCTAGTCTGTGGACCCCTTCTGTGTAGAAATAGAAAAAGTAGGC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCTAGTCTGTGGACCCCTTCTGTGTAGAAATAGAAAAAGTAGGC  837

seq1  AGTTCCTGATGAATGAAGGGTCAACTGGCTTCTGTACTCACTGATTTAAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGATGAATGAAGGGTCAACTGGCTTCTGTACTCACTGATTTAAA  887

seq1  CTGGACCTGGAGTTTGCAATAATCACCATGGGGAGGCATTGTCCTTTATG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTGGAGTTTGCAATAATCACCATGGGGAGGCATTGTCCTTTATG  937

seq1  ACCTCAGTTCTTTTGGATTCACAAGCAAAAAATTACACTGCTTTAAATAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTTCTTTTGGATTCACAAGCAAAAAATTACACTGCTTTAAATAA  987

seq1  TTTGCTCGTTTGGTAGTGTTATACTTCTGATAGCCAAAAATTATTTTTGG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCGTTTGGTAGTGTTATACTTCTGATAGCCAAAAATTATTTTTGG  1037

seq1  AATGCATGTTTTCTTTTTTTAAAGATACACATTTGGCTATAATCTTGTAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTTTTCTTTTTTTAAAGATACACATTTGGCTATAATCTTGTAT  1087

seq1  ATACAGCCTCAAATATAACATTCAGCAAGTTAACATTTAGATTTCTTTTT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCCTCAAATATAACATTCAGCAAGTTAACATTTAGATTTCTTTTT  1137

seq1  AGACTCAAACACATCAACAAATATAGGATTCTTGAAATCTTTTAATACTT  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAACACATCAACAAATATAGGATTCTTGAAATCTTTTAATACTT  1187

seq1  CTTTTGGGTGTACTTATCTGTTCTAAACTTGGGCATTCTGAATTC  1228
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGTGTACTTATCTGTTCTAAACTTGGGCATTCTGAATTC  1232

seq1: chr4_43045233_43046402
seq2: B6Ng01-142L08.g_80_1198

seq1  CCTTTAGGCCCCACATCTCCATCCTCTTGAACACAAAAAAAAGTAGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGCCCCACATCTCCATCCTCTTGAACACAAAAAAAAGTAGAGGT  50

seq1  TAGTTCAAGTTTCCAAACAAGAATTTATTCTTTTTTTTTTCCTTAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAAGTTTCCAAACAAGAATTTATTCTTTTTTTTTTCCTTAAAAAA  100

seq1  TGTACCAGGTACAATTTTTCCCATTTTTTTGTTTGTTTGTTTTGTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGGTACAATTTTTCCCATTTTTTTGTTTGTTTGTTTTGTTTTTC  150

seq1  AAGTTTCAGCAAATGCTTGTTCCCCTCAGCCAAGCCCCAAGAGTTAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGCAAATGCTTGTTCCCCTCAGCCAAGCCCCAAGAGTTAAGGG  200

seq1  TTGAGGCTGGGTCAGAGTCTTAAGTGAGGAGTGGAGTAACTGGGAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTGGGTCAGAGTCTTAAGTGAGGAGTGGAGTAACTGGGAACCAT  250

seq1  GTGACTGAATGAGGGGCACCCCTCATCCCAGCTGAGGTAGGTGGGTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAATGAGGGGCACCCCTCATCCCAGCTGAGGTAGGTGGGTCAGA  300

seq1  GTCTGGTCAGGTGAGAGGAGGTTCCCCAGTCCTTAGGCCTGACTCTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCAGGTGAGAGGAGGTTCCCCAGTCCTTAGGCCTGACTCTGTCC  350

seq1  CTGGACACCTTCCTCAGTCAGGACACCAAAGCAAGGAGACACAGGCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACCTTCCTCAGTCAGGACACCAAAGCAAGGAGACACAGGCAGGA  400

seq1  GGAGAGGGACAAGTGAGTCTGAGCCCTAGGTAAGAGGTGGCTAAACCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGACAAGTGAGTCTGAGCCCTAGGTAAGAGGTGGCTAAACCCCT  450

seq1  GTGTTACACATACATGCACATTCTGTCTCTCTCTCACACACACACCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACACATACATGCACATTCTGTCTCTCTCTCACACACACACCCTAC  500

seq1  ACAAACCCAAGTTTGTATGCACGCACACAGCTGTACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCAAGTTTGTATGCACGCACACAGCTGTACACACACACACACAC  550

seq1  ACACACACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCA  600

seq1  GGAAAGGGAAAAGGAATAGAGAAAGCCGAGGGAAGCTGAGTCTTTGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAAAAGGAATAGAGAAAGCCGAGGGAAGCTGAGTCTTTGGCTA  650

seq1  AGTGACTCAGTTCCTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCAGTTCCTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAG  700

seq1  CAGCTCTCCCCTTGCCCCGACATCAGCTTCTTCAAGTCCTGAGGTTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCCCTTGCCCCGACATCAGCTTCTTCAAGTCCTGAGGTTGGAG  750

seq1  CAATATCTGAGAGTGGGGTGATGCCAATTATCAGGTTTGGGAGGTCACCA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAATATCTGAGAGTGGGGTGATGCCAATTATCA-GTTTGGGAGGTCACCA  799

seq1  AGGCAATCCAATTTGAATAAATTATAAATTAAAAATAAATAAAATAATAA  850
      |||||||||||||||||| ||||||||||| |||||||   |||||||||
seq2  AGGCAATCCAATTTGAAT-AATTATAAATT-AAAATAA--TAAATAATAA  845

seq1  GTGGCCCCTGCCCAGGACAGGGAGGCAACGCTGGCATTACTTGCCTGGGA  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGG-CCCTGCCCAGGACAGGGAGGCAACGCTGGCATTACTTGCCTGGGA  894

seq1  ACTTGGGACAATCTCAGGGTAGCTCTGGTTCCTCCCTAACTACCTAAGCT  950
      |||| |||| |||||| ||||||||| ||||||||||||||||   ||||
seq2  ACTT-GGAC-ATCTCA-GGTAGCTCT-GTTCCTCCCTAACTAC--TAGCT  938

seq1  GGCCTGGGAAACCCAAGGGAGGGGACAGGCACATGAAGTACCCAGAGCAG  1000
      || ||||| ||||||  |||||||||||||||||| |||| |||||||||
seq2  GG-CTGGG-AACCCA--GGAGGGGACAGGCACATG-AGTA-CCAGAGCAG  982

seq1  ACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGG  1050
      | ||||||||||  |||   |||||| ||||||  ||||||||  || ||
seq2  A-AGGGTATGGA--GAC--GAGCTTT-AACACC--AATAGTCA--TTTGG  1022

seq1  CGTGAGCGGGATGAGGACTTTAATTCAAGCCTGAAGGGGCT-CTCGCCAT  1099
      ||||||||||||||||||||||  |||   ||||  ||||| |||||   
seq2  CGTGAGCGGGATGAGGACTTTA--TCA--GCTGA--GGGCTCCTCGC--A  1064

seq1  TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGC  1149
      |||||  |||||    |||||   ||||||| |||  ||| |||    ||
seq2  TTCTC--CAGTT---ACTGTC--AGATGGTA-GACGAGCA-GCT----GC  1101

seq1  CCACCTAGGTTCAGGATGCTT  1170
      |   |||||||||||| ||||
seq2  C--ACTAGGTTCAGGA-GCTT  1119