BAC Information

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BAC

Clone NameB6Ng01-144G07
Chromosome4 (Build37)
Map Location 87,949,357 - 88,117,013
singlet/doubletdoublet
Overlap geneBC057079, Ptplad2
Upstream geneMllt3
Downstream geneIfnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G07.bB6Ng01-144G07.g
ACCDH942083DH942084
length1,1621,057
definitionDH942083|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G07, 5' end.DH942084|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,115,826 - 88,117,013)(87,949,357 - 87,950,418)
sequence
gaattccatgccagggctacatagtaagactgtatctcaacaaaataatg
cagtcattagtgaacatatatatgtatctcatcgagaagacagaaaaatt
tataactaatatatatatatatatatatatacactatactatgttatata
gtatataatatactaaattatatacttatatagtatatgttatatgtaat
atataattttatgactagcatatgtatgctagttataagattttataagt
atatatactggtcataagattttctacttcctttctctctctctctgtat
atatatgtatatatttatttacatatatgtatgcatatatacatacacat
acaaatatacatacatatatggtcttaataaagagttggccgctacctgt
ccagattactttatccagcaaatttgtataaattctgttgtacaaagacc
actaaagaaaaccacaattggtcaagatagagagaactgatcctggagtg
tctggcccaactggtacatctacaacacaaatcctgcacctaagattcaa
ggaccattatggagtggatgaggaaaaggtgagcgtcagagaaccaggaa
atatgctgtgagattgtgcctttagaaatgacagggaagtttcaccaata
acatctcaaaaatatgactgcctaaacaggatctgaacaaggaaaggaga
aatctcatgggctcccacccttagacaaagagttaaaggcaacttaggat
gccaagataaggattaaaaagtctacactagggacaagcccctaattaat
tttccaatgccaaaaaaccagtcctaaaattatgtacatatgggtaatac
taaacagatcaagagggttgtatttgtagaccttggtgtgtatgtgtgtc
tgtttttcacatataacaacaatttaaactatttgtcataatgttggata
agaaaaatctctaataaaaataaactaaaggaattatagtcacaaccacc
actactgatgataattgaaggaattcttcaactccagtgaaagataactc
atccaaccaccatcctgacagtatcagccaggagaaacaaagaatagaga
cattgtcaataaaattatcgaaggaaactgtctttcataactttgaaagt
atatgctacgtt
gaattctttacatctcttgtgagacaagagatggtgaatatgccccgtgg
gatatatcactctgcattgaaaggaggcgtgcgctcagaccaagggaaga
cagtagcaggaatcccgaacttcatattgaagacatacgaaacaaacaag
caaccaggattgaaacctggcctggcaggtaagaatactgcacttggtga
agtgcaggtttacagtgtcatgtctcaacttgtgcttccatgtgaaattg
taataagttacatggtaggacattgcttggctgctgctcacatttacaca
cagctggaacagttacaacaaacaaccgaattgaaaaggaattcaaaaaa
tgcagaagcaaagataaatagatagcttcaaattccagaatggggagact
attttagacctttttaccccttggaacatattctattctaactgtggatt
tgattggcagctggctcaggccagaggttaggtcttgttggagaagtggc
caacaaatgtatggaaacaattttaatattcttagttatcagggaaatgc
aaatcatgaatctattgagactccagcttggtccagtcagaagagccatt
acaagaaaagaaacaggaaatgaagataaagacatagaaaacatagagaa
caagggatactcatacactattgctgaagctgtatattagcctagccact
atggaagtcagtatagatgttgcccagcagggagaactagaagtaccaca
tgatcccatgtactgctttttggttttacaataagtattccaagttagca
tataatatagtagtatacttgcaatttaacatttattaagacattgttca
caaatcagcctgtgtccattagcagataaattaacaataacacaataata
ataataaatcatagtttataaaatatggatttttattcctccataagaga
agaaaaatcatgtcatttgcaggaaactattttgtcgtcaaactgagcca
tagagtcagattcagaggacatactgaatgtttggcatctagattttaaa
ataggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88115826_88117013
seq2: B6Ng01-144G07.b_49_1210 (reverse)

seq1  AACGTAGACATTAACTTTCAAAGTTATTGAAATGTACATGTTCCTCGTTG  50
      ||||||| |||  ||||||||||||| |||||   |||  |||||  | |
seq2  AACGTAG-CATATACTTTCAAAGTTA-TGAAA--GACAGTTTCCT--TCG  44

seq1  ATATTTTTGTTGACAATATGTGCTCATTTTCTTCTGGTTCCTCCTTGACT  100
      ||| |||| |||||||| |   ||| | ||||  | ||| |||| || ||
seq2  ATAATTTTATTGACAATGT---CTC-TATTCT--TTGTTTCTCC-TGGCT  87

seq1  GACTACTGTTCTAGAATGGTTGGTTGGATGTGTTTTACTTTTCACTTGAG  150
      || ||||||   || |||| |||||||||| |  |||  ||||||| |||
seq2  GA-TACTGT--CAGGATGG-TGGTTGGATGAG--TTATCTTTCACTGGAG  131

seq1  TTTGAAGAATTCCTTCAATTATCATCAGTAGTGCTGGTTTGTTGATTATG  200
       |||||||||||||||||||||||||||||||| |||||   ||| ||| 
seq2  -TTGAAGAATTCCTTCAATTATCATCAGTAGTGGTGGTT--GTGACTAT-  177

seq1  AATTCCTTTAGTTTATTTTTATTAGAGATTTTTCTTATTCCAACAATTAT  250
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  AATTCCTTTAGTTTATTTTTATTAGAGATTTTTCTTA-TCCAAC-ATTAT  225

seq1  GACAAATAGTTTAAAATTGTTGTTATATGTGAAAAACAGACACACATACA  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACAAATAGTTT-AAATTGTTGTTATATGTGAAAAACAGACACACATACA  274

seq1  CACCAAGGTCTACAAATACAACCCTCTTGATCTGTTTAGTATTACCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGTCTACAAATACAACCCTCTTGATCTGTTTAGTATTACCCATA  324

seq1  TGTACATAATTTTAGGACTGGTTTTTTGGCATTGGAAAATTAATTAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAATTTTAGGACTGGTTTTTTGGCATTGGAAAATTAATTAGGGG  374

seq1  CTTGTCCCTAGTGTAGACTTTTTAATCCTTATCTTGGCATCCTAAGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCTAGTGTAGACTTTTTAATCCTTATCTTGGCATCCTAAGTTGC  424

seq1  CTTTAACTCTTTGTCTAAGGGTGGGAGCCCATGAGATTTCTCCTTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTCTTTGTCTAAGGGTGGGAGCCCATGAGATTTCTCCTTTCCTT  474

seq1  GTTCAGATCCTGTTTAGGCAGTCATATTTTTGAGATGTTATTGGTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATCCTGTTTAGGCAGTCATATTTTTGAGATGTTATTGGTGAAAC  524

seq1  TTCCCTGTCATTTCTAAAGGCACAATCTCACAGCATATTTCCTGGTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTCATTTCTAAAGGCACAATCTCACAGCATATTTCCTGGTTCTC  574

seq1  TGACGCTCACCTTTTCCTCATCCACTCCATAATGGTCCTTGAATCTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCTCACCTTTTCCTCATCCACTCCATAATGGTCCTTGAATCTTAGG  624

seq1  TGCAGGATTTGTGTTGTAGATGTACCAGTTGGGCCAGACACTCCAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATTTGTGTTGTAGATGTACCAGTTGGGCCAGACACTCCAGGATC  674

seq1  AGTTCTCTCTATCTTGACCAATTGTGGTTTTCTTTAGTGGTCTTTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTCTATCTTGACCAATTGTGGTTTTCTTTAGTGGTCTTTGTACA  724

seq1  ACAGAATTTATACAAATTTGCTGGATAAAGTAATCTGGACAGGTAGCGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTATACAAATTTGCTGGATAAAGTAATCTGGACAGGTAGCGGC  774

seq1  CAACTCTTTATTAAGACCATATATGTATGTATATTTGTATGTGTATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTTATTAAGACCATATATGTATGTATATTTGTATGTGTATGTAT  824

seq1  ATATGCATACATATATGTAAATAAATATATACATATATATACAGAGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACATATATGTAAATAAATATATACATATATATACAGAGAGAG  874

seq1  AGAGAAAGGAAGTAGAAAATCTTATGACCAGTATATATACTTATAAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGAAGTAGAAAATCTTATGACCAGTATATATACTTATAAAATC  924

seq1  TTATAACTAGCATACATATGCTAGTCATAAAATTATATATTACATATAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTAGCATACATATGCTAGTCATAAAATTATATATTACATATAAC  974

seq1  ATATACTATATAAGTATATAATTTAGTATATTATATACTATATAACATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTATATAAGTATATAATTTAGTATATTATATACTATATAACATAG  1024

seq1  TATAGTGTATATATATATATATATATATATTAGTTATAAATTTTTCTGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTATATATATATATATATATATATTAGTTATAAATTTTTCTGTC  1074

seq1  TTCTCGATGAGATACATATATATGTTCACTAATGACTGCATTATTTTGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGATGAGATACATATATATGTTCACTAATGACTGCATTATTTTGTT  1124

seq1  GAGATACAGTCTTACTATGTAGCCCTGGCATGGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGTCTTACTATGTAGCCCTGGCATGGAATTC  1162

seq1: chr4_87949357_87950418
seq2: B6Ng01-144G07.g_65_1121

seq1  GAATTCTTTACATCTCTTGTGAGACAAGAGATGGTGAATATGCCCCGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACATCTCTTGTGAGACAAGAGATGGTGAATATGCCCCGTGG  50

seq1  GATATATCACTCTGCATTGAAAGGAGGCGTGCGCTCAGACCAAGGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATCACTCTGCATTGAAAGGAGGCGTGCGCTCAGACCAAGGGAAGA  100

seq1  CAGTAGCAGGAATCCCGAACTTCATATTGAAGACATACGAAACAAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAGGAATCCCGAACTTCATATTGAAGACATACGAAACAAACAAG  150

seq1  CAACCAGGATTGAAACCTGGCCTGGCAGGTAAGAATACTGCACTTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGATTGAAACCTGGCCTGGCAGGTAAGAATACTGCACTTGGTGA  200

seq1  AGTGCAGGTTTACAGTGTCATGTCTCAACTTGTGCTTCCATGTGAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGTTTACAGTGTCATGTCTCAACTTGTGCTTCCATGTGAAATTG  250

seq1  TAATAAGTTACATGGTAGGACATTGCTTGGCTGCTGCTCACATTTACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTTACATGGTAGGACATTGCTTGGCTGCTGCTCACATTTACACA  300

seq1  CAGCTGGAACAGTTACAACAAACAACCGAATTGAAAAGGAATTCAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAACAGTTACAACAAACAACCGAATTGAAAAGGAATTCAAAAAA  350

seq1  TGCAGAAGCAAAGATAAATAGATAGCTTCAAATTCCAGAATGGGGAGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGCAAAGATAAATAGATAGCTTCAAATTCCAGAATGGGGAGACT  400

seq1  ATTTTAGACCTTTTTACCCCTTGGAACATATTCTATTCTAACTGTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGACCTTTTTACCCCTTGGAACATATTCTATTCTAACTGTGGATT  450

seq1  TGATTGGCAGCTGGCTCAGGCCAGAGGTTAGGTCTTGTTGGAGAAGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGCAGCTGGCTCAGGCCAGAGGTTAGGTCTTGTTGGAGAAGTGGC  500

seq1  CAACAAATGTATGGAAACAATTTTAATATTCTTAGTTATCAGGGAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGTATGGAAACAATTTTAATATTCTTAGTTATCAGGGAAATGC  550

seq1  AAATCATGAATCTATTGAGACTCCAGCTTGGTCCAGTCAGAAGAGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGAATCTATTGAGACTCCAGCTTGGTCCAGTCAGAAGAGCCATT  600

seq1  ACAAGAAAAGAAACAGGAAATGAAGATAAAGACATAGAAAACATAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAGAAACAGGAAATGAAGATAAAGACATAGAAAACATAGAGAA  650

seq1  CAAGGGATACTCATACACTATTGCTGAAGCTGTATATTAGCCTAGCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATACTCATACACTATTGCTGAAGCTGTATATTAGCCTAGCCACT  700

seq1  ATGGAAGTCAGTATAGATGTTGCCCAGCAGGGAGAACTAGAAGTACCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTCAGTATAGATGTTGCCCAGCAGGGAGAACTAGAAGTACCACA  750

seq1  TGATCCCATGTACTGCTTTTTGGTTTTACAATAAGTATTCCAAGTTAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCATGTACTGCTTTTTGGTTTTACAATAAGTATTCCAAGTTAGCA  800

seq1  TATAATATAGTAGTATACTTGCAATTTAACATTTATTAAGACATTGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATAGTAGTATACTTGCAATTTAACATTTATTAAGACATTGTTCA  850

seq1  CAAATCAGCCTGTGCCCATTAGCAGATAAATTAACAATAACAACAATAAT  900
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CAAATCAGCCTGTGTCCATTAGCAGATAAATTAACAATAAC-ACAATAAT  899

seq1  AATAATAAATCATAGTTTATAAAATATGGATTTTTATTCCTCCATTAAGA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATAATAAATCATAGTTTATAAAATATGGATTTTTATTCCTCCA-TAAGA  948

seq1  GAAGAAAAATCATGTCATTTGCAGGAAAACTA-TTTGTCGTCAAACTGAG  999
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  GAAGAAAAATCATGTCATTTGCAGG-AAACTATTTTGTCGTCAAACTGAG  997

seq1  CCATAAGAGTCAGATTCAGAAGGACATACTGAATGTTTGCAATCTAGATT  1049
      |||| |||||||||||||| |||||||||||||||||||  |||||||||
seq2  CCAT-AGAGTCAGATTCAG-AGGACATACTGAATGTTTGGCATCTAGATT  1045

seq1  TTAAAAATAGGAC  1062
      || ||||||||||
seq2  TT-AAAATAGGAC  1057