BAC Information

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BAC

Clone NameB6Ng01-146F04
Chromosome4 (Build37)
Map Location 141,091,982 - 141,199,723
singlet/doubletdoublet
Overlap geneSpen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2
Upstream geneArhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17
Downstream geneDdi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F04.bB6Ng01-146F04.g
ACCDH943496DH943497
length7551,125
definitionDH943496|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F04, 5' end.DH943497|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,198,969 - 141,199,723)(141,091,982 - 141,093,119)
sequence
gaattcagtcccagtcagcctggctgctgggcttgttccgggtcatagag
aagaggctatttttgttgtgggagttcaatggttggcctccctccaagag
catgtgcctcttggtgtgactgatctgccactgcagctgcttccagaaaa
cacttgagagcggagtggtcccaggagcttaaacccacccccagtgtatg
gggatctctgctcttttcttgcattttccatctgggccactgggaaggtg
acaggagagggctctgctctggctgcatagatctcaggctcctggcctct
atcatcctggtgggctgggggtgcttcagagctcagagtcctctgagatc
tcagacttcctctcttccccttctttctctcattctccctggctctcttt
ttccctccctcccaccctctctctgtccccctgtccagctctgggaacag
agtccttcttggcacggggcttgacacaaatctggcacacacctagatgt
ggccattttcctcgggtacatctaatgtccatgtcagcctctggcaggaa
agccatcaaagcaggtgacccagcctctcagactttggtgtgtacagagg
gcagctccaagcagggcctacacattaaataaatgatatattttttttga
tattttttaaagtgtttgggaatcttttttaaatgccttcagatattacc
aacaggctctctctctctctctctctctctctctctctctctctctctct
ctctc
gaattcctgggtcaagggtgaaggggagattactttctgttaccttctca
tgctctgctcccattaaaggtgtactaaccaaataaaatccattcgtctc
aaagtgagaactgtcgcttttacgatacaggagttttggggacacacatc
tgcagaggcttcaaataatctttttaccaagagcatctgataaagcgctg
ctgtaaacgcggggtcagcagtgtgccggtgagccttcgtctagcgccgc
gttcctcgggctctccgggcagccctcctgcgagcctcctcccgccctcc
ctgccgtgcattcggagcggctccgcagattcccacataaagtgggtcct
ggccgccatcttagagagtcattcacaccagccggaccgcggcaccacgc
ttccaagcctcccaggactgcgcccaacctcctccctcgctgctctccct
ctccctcggcttgcacagggggtcaaactccaggtctgaggcaagccgtg
cctctgaaatctgcatgatgtaaaatgtcaagtctgaccacccaacacag
gagcagagcgaatgaggcgatgcacgtgtttgcacgtcgggtgcgtatca
atttcccatgcagagacccatggaagagccactgggcgatttaaaggagg
tacagcgcagaggggtttccactccagaacctaagaaagcggagtgctat
cttctccacgctgaggacctgctactagagggcagagacccgagccgagg
ggtggagcagcacgggcagagaaagttcccatctgctggcgctccagctg
ctgcagtcccctttcatccccgggcaccccggccaacactccatctccgg
acctcccctctcccgtgtctcagacacaacgtagtaaacacccggagtcc
aggcagcgcgcacctccccaggcctgcgaggacatcccggcaggttatga
tggcctcactatactcagcttccttttcacaacgcgggcacccgcacacg
cgcggcccgggaggcgaagatttatacctcctgtcgagcacggccaccgg
atcatggtcccttcatctagagagagaaagtaggggctacgcttccaggc
ccacaaagaggttctgaacgggcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_141198969_141199723
seq2: B6Ng01-146F04.b_46_800 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC  50

seq1  CTGTTGGTAATATCTGAAGGCATTTAAAAAAGATTCCCAAACACTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTAATATCTGAAGGCATTTAAAAAAGATTCCCAAACACTTTAAA  100

seq1  AAATATCAAAAAAAATATATCATTTATTTAATGTGTAGGCCCTGCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAAAAAAATATATCATTTATTTAATGTGTAGGCCCTGCTTGGA  150

seq1  GCTGCCCTCTGTACACACCAAAGTCTGAGAGGCTGGGTCACCTGCTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTCTGTACACACCAAAGTCTGAGAGGCTGGGTCACCTGCTTTGA  200

seq1  TGGCTTTCCTGCCAGAGGCTGACATGGACATTAGATGTACCCGAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCCTGCCAGAGGCTGACATGGACATTAGATGTACCCGAGGAAAA  250

seq1  TGGCCACATCTAGGTGTGTGCCAGATTTGTGTCAAGCCCCGTGCCAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACATCTAGGTGTGTGCCAGATTTGTGTCAAGCCCCGTGCCAAGAA  300

seq1  GGACTCTGTTCCCAGAGCTGGACAGGGGGACAGAGAGAGGGTGGGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGTTCCCAGAGCTGGACAGGGGGACAGAGAGAGGGTGGGAGGGA  350

seq1  GGGAAAAAGAGAGCCAGGGAGAATGAGAGAAAGAAGGGGAAGAGAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAGAGAGCCAGGGAGAATGAGAGAAAGAAGGGGAAGAGAGGAAG  400

seq1  TCTGAGATCTCAGAGGACTCTGAGCTCTGAAGCACCCCCAGCCCACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATCTCAGAGGACTCTGAGCTCTGAAGCACCCCCAGCCCACCAGG  450

seq1  ATGATAGAGGCCAGGAGCCTGAGATCTATGCAGCCAGAGCAGAGCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAGGCCAGGAGCCTGAGATCTATGCAGCCAGAGCAGAGCCCTCT  500

seq1  CCTGTCACCTTCCCAGTGGCCCAGATGGAAAATGCAAGAAAAGAGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCTTCCCAGTGGCCCAGATGGAAAATGCAAGAAAAGAGCAGAG  550

seq1  ATCCCCATACACTGGGGGTGGGTTTAAGCTCCTGGGACCACTCCGCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATACACTGGGGGTGGGTTTAAGCTCCTGGGACCACTCCGCTCTC  600

seq1  AAGTGTTTTCTGGAAGCAGCTGCAGTGGCAGATCAGTCACACCAAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTTCTGGAAGCAGCTGCAGTGGCAGATCAGTCACACCAAGAGGC  650

seq1  ACATGCTCTTGGAGGGAGGCCAACCATTGAACTCCCACAACAAAAATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCTTGGAGGGAGGCCAACCATTGAACTCCCACAACAAAAATAGC  700

seq1  CTCTTCTCTATGACCCGGAACAAGCCCAGCAGCCAGGCTGACTGGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTATGACCCGGAACAAGCCCAGCAGCCAGGCTGACTGGGACTG  750

seq1  AATTC  755
      |||||
seq2  AATTC  755

seq1: chr4_141091982_141093119
seq2: B6Ng01-146F04.g_68_1192

seq1  GAATTCCTGGGTCAAGGGTGAAGGGGAGATTACTTTCTGTTACCTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTCAAGGGTGAAGGGGAGATTACTTTCTGTTACCTTCTCA  50

seq1  TGCTCTGCTCCCATTAAAGGTGTACTAACCAAATAAAATCCATTCGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTCCCATTAAAGGTGTACTAACCAAATAAAATCCATTCGTCTC  100

seq1  AAAGTGAGAACTGTCGCTTTTACGATACAGGAGTTTTGGGGACACACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGAACTGTCGCTTTTACGATACAGGAGTTTTGGGGACACACATC  150

seq1  TGCAGAGGCTTCAAATAATCTTTTTACCAAGAGCATCTGATAAAGCGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGCTTCAAATAATCTTTTTACCAAGAGCATCTGATAAAGCGCTG  200

seq1  CTGTAAACGCGGGGTCAGCAGTGTGCCGGTGAGCCTTCGTCTAGCGCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACGCGGGGTCAGCAGTGTGCCGGTGAGCCTTCGTCTAGCGCCGC  250

seq1  GTTCCTCGGGCTCTCCGGGCAGCCCTCCTGCGAGCCTCCTCCCGCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCGGGCTCTCCGGGCAGCCCTCCTGCGAGCCTCCTCCCGCCCTCC  300

seq1  CTGCCGTGCATTCGGAGCGGCTCCGCAGATTCCCACATAAAGTGGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGTGCATTCGGAGCGGCTCCGCAGATTCCCACATAAAGTGGGTCCT  350

seq1  GGCCGCCATCTTAGAGAGTCATTCACACCAGCCGGACCGCGGCACCACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCATCTTAGAGAGTCATTCACACCAGCCGGACCGCGGCACCACGC  400

seq1  TTCCAAGCCTCCCAGGACTGCGCCCAACCTCCTCCCTCGCTGCTCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCCTCCCAGGACTGCGCCCAACCTCCTCCCTCGCTGCTCTCCCT  450

seq1  CTCCCTCGGCTTGCACAGGGGGTCAAACTCCAGGTCTGAGGCAAGCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCGGCTTGCACAGGGGGTCAAACTCCAGGTCTGAGGCAAGCCGTG  500

seq1  CCTCTGAAATCTGCATGATGTAAAATGTCAAGTCTGACCACCCAACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAATCTGCATGATGTAAAATGTCAAGTCTGACCACCCAACACAG  550

seq1  GAGCAGAGCGAATGAGGCGATGCACGTGTTTGCACGTCGGGTGCGTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCGAATGAGGCGATGCACGTGTTTGCACGTCGGGTGCGTATCA  600

seq1  ATTTCCCATGCAGAGACCCATGGAAGAGCCACTGGGCGATTTAAAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCATGCAGAGACCCATGGAAGAGCCACTGGGCGATTTAAAGGAGG  650

seq1  TACAGCGCAGAGGGGTTTCCACTCCAGAACCTAAGAAAGCGGAGTGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCGCAGAGGGGTTTCCACTCCAGAACCTAAGAAAGCGGAGTGCTAT  700

seq1  CTTCTCCACGCTGAGGACCTGCTACTAGAGGGCAGAGACCCGAGCCGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCACGCTGAGGACCTGCTACTAGAGGGCAGAGACCCGAGCCGAGG  750

seq1  GGTGGAGCAGCACGGGCAGAGAAAGTTCCCATCTGCTGGCGCTCCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCAGCACGGGCAGAGAAAGTTCCCATCTGCTGGCGCTCCAGCTG  800

seq1  CTGCAGTCCCCTTTCATCCCCGGGCACCCCGGCCAACACTCCATCTCCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCCCCTTTCATCCCCGGGCACCCCGGCCAACACTCCATCTCCGG  850

seq1  ACCTCCCCCTCTCCCGTGTCTCAGACACAACGTAGTAAACACCCGGAGTC  900
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACCT-CCCCTCTCCCGTGTCTCAGACACAACGTAGTAAACACCCGGAGT-  898

seq1  CCAGGCAGCGCGCACCTCCCCCAGGCCTGCGGAGGACATCCCGGCAGGTT  950
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CCAGGCAGCGCGCACCT-CCCCAGGCCTGC-GAGGACATCCCGGCAGGTT  946

seq1  ATGAATGGCCTCACTATACCCAGC-TCCTTTTCAC-ACGCGGGCACGCGC  998
      ||| ||||||||||||||| |||| |||||||||| |||||||||| |||
seq2  ATG-ATGGCCTCACTATACTCAGCTTCCTTTTCACAACGCGGGCACCCGC  995

seq1  ACACGCGC-GCCCCGGAGGCGAAGATTTAATACCCCCGGTCAGAGCAACG  1047
      |||||||| |||| |||||||||||||| ||||| || ||| |||| |||
seq2  ACACGCGCGGCCCGGGAGGCGAAGATTT-ATACCTCCTGTC-GAGC-ACG  1042

seq1  GCCAACAGAATCAATGGCCCTCCATCAGAGAGAGAGAAAGGAAGGCGCTC  1097
      ||| || | ||||  | |||| ||||  ||||||||||| | ||| ||| 
seq2  GCC-ACCGGATCATGGTCCCTTCATC-TAGAGAGAGAAA-GTAGGGGCT-  1088

seq1  ACGCTTCCCAGGCCTCACCAAAGAGGTTCTAGACCGGGCGA  1138
      |||||| ||||||| || |||||||||||| || |||||||
seq2  ACGCTT-CCAGGCC-CA-CAAAGAGGTTCT-GAACGGGCGA  1125