BAC Information

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BAC

Clone NameB6Ng01-151C09
Chromosome4 (Build37)
Map Location 99,345,757 - 99,489,798
singlet/doubletdoublet
Overlap geneAlg6, Itgb3bp
Upstream geneInadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3
Downstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573, Cachd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151C09.bB6Ng01-151C09.g
ACCDH947046DH947047
length1,1461,036
definitionDH947046|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C09, 5' end.DH947047|Mus musculus domesticus DNA, BAC clone: B6Ng01-151C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,488,632 - 99,489,798)(99,345,757 - 99,346,493)
sequence
gaattcaaaactggaaaataaatatggaaaaaaattacctaaagaacaat
aacatgaaaaataagttcagtgtattggcagatatattaagacattaaaa
attaattcacttcatggttagaaaggtagcctggagaacaggcaatattt
gaggaaattgtaggttttctagaattgatgaaacatacatcagtgcagaa
gtctaccttagatataactgtattaatatgacatctttgaagactgacat
ttaaggtacctcgaataaacatgaccaaaatgtcttttgagaggcaaatg
cggatgtcacttcattggtagaatcctggctaagcatatatgagaccttt
attcaactcctagtagtgccctcaaatataaaatacatatatgtgtttac
atataacatatttatatgtgtgctataatatacacatttgcattatttat
catgacatatatattttaaatagttatctaggagtttcaaagcaaactac
tccctcatatgcaaaaaatgggccctataggaaattgaaataattatttg
attcattttaatgaaaaaaatcacaattgattgaacaataacttatataa
caacagtatgccaactacttgagaactgaaatctagtggtttgggttttc
acagaaagttcaataaacatcttaaaaactcactgtttactaactaacag
gcaagacctagtgatttaataatctagggaacagaacatacacattcctt
tgacataaagtgcttcctgaggaggtcgtgcgcaaatgctgctgagagta
aaaggatacttactgacaacggggcagtatgaggaccgcatggaaatgac
tgggggcgtcttagaagtagagtagagccaggcggtggtgacgcacgcct
ttaatcccagcacttgggaggcagaggcaagtggatttctgagtttgagt
ccagcctggtctacaagtgagtacaggacagcaggctacagagaaccctg
tctcgaaaaaacaaacacacaaaaaaaaaaaaccactacaacaaaaaaaa
aacagtgagtagaaattgactagcactggggtgatggctcttcgttatgt
ggtaaaggggtgtatggagaataaattcatatgaaaagtgtgacat
gaattccaggtcagtcaaaacaacatagagagattctgtcttaaaaaata
gcaaaacaaacaaacaaacaaaaacaagttagacaaacagacaaaaaaaa
agtttgtgcacattagcacagtaagcagacatttctattttctgttctct
agatgtttatcatgtaatgtaatatcagttgaggtagtagcagtagttta
gtgttataaatctttattatcatatttaagttatgagacactaaaacact
aagcattctacaaggggctttgccacctattctaaaaaatgcaatgtgtt
ttcagttgtttgtgaggtattctccatgttaggcaggatgatgatcatgc
ttggtttcatttggaaattcaacatgacttgaggggatctgattgggtgc
caagttgacaaggagtaatttgtgatagctaatcttggttatcaatttga
ctagctctggaatcaggtaaaactcaacctactgggaacacctgtaaggg
acttccttggtgagattacaagaagcagaaagactcaccttctggtgtca
gcccagataaaagaacatgaacaaaaaaaatctttgcttgtctgtctgct
tgcctttgctttttttttttttttaattaaaaaaaattttcgggctggag
agatggctcagtggttaaggccactgactgctttaccagaggccctgagt
tcatttcccagctaccacatggtgactcacaaccatctgtaatgggacct
gatgccctctttctggtgagtctgaagacagctatagtgtactcatgtac
ataaaatacatgagttggttgagagatcagctcaaccctcatcagaagtg
cttcttctttgcatggatggtaattaacacagaggtccacagctggacaa
tagcgcagagagcaactttggaacactcagtcctaaatgggatgtcttca
tgaaacctctgactcaaagctcagtctatgcagaagagagagaagacttc
agaaaatgtcgaagtgctgggtactccgagaatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99488632_99489798
seq2: B6Ng01-151C09.b_48_1193 (reverse)

seq1  ATGTGCACACTTTTCATTATGAATTATATCTCATAACACACATATA-CAC  49
      |||| ||||||||||| ||||||||   ||||   |||| | | || |||
seq2  ATGT-CACACTTTTCA-TATGAATTTATTCTCCATACACCCCTTTACCAC  48

seq1  ATAAACAGAAAGAGCAAATCACCCAAGTGCTAGTC-ATGTCTACTCCACT  98
      |||   |  ||||||  ||||||| |||||||||| || |||||| ||| 
seq2  ATA---ACGAAGAGC-CATCACCCCAGTGCTAGTCAATTTCTACT-CAC-  92

seq1  TGTTTTTTTTTTGTTTGTTTGGTTGGTTTTTTTTTTTTTGTTGTTGTTTG  148
      |||||||||||||||    |||     ||||||||||||||   ||||||
seq2  TGTTTTTTTTTTGTTGTAGTGG-----TTTTTTTTTTTTGT--GTGTTTG  135

seq1  GTTTTTTTTCGAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGTAACTC  198
         |||||||||||||||| ||||||||||||   |||||||||| ||||
seq2  ---TTTTTTCGAGACAGGG-TTCTCTGTAGCC--TGCTGTCCTGT-ACTC  178

seq1  ACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCCACTTGCCTCTGCC  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-TTGTAGACCAGGCTGGACTCAAACTCAGAAATCCACTTGCCTCTGCC  227

seq1  TCCCAAGTGCTGGGATTAAAGGCGTGCGTCACCACCGCCTGGCTCTACTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAAGGCGTGCGTCACCACCGCCTGGCTCTACTC  277

seq1  TACTTCTAAGACGCCCCCAGTCATTTCCATGCGGTCCTCATACTGCCCCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAAGACGCCCCCAGTCATTTCCATGCGGTCCTCATACTGCCCCG  327

seq1  TTGTCAGTAAGTATCCTTTTACTCTCAGCAGCATTTGCGCACGACCTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTAAGTATCCTTTTACTCTCAGCAGCATTTGCGCACGACCTCCT  377

seq1  CAGGAAGCACTTTATGTCAAAGGAATGTGTATGTTCTGTTCCCTAGATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCACTTTATGTCAAAGGAATGTGTATGTTCTGTTCCCTAGATTA  427

seq1  TTAAATCACTAGGTCTTGCCTGTTAGTTAGTAAACAGTGAGTTTTTAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCACTAGGTCTTGCCTGTTAGTTAGTAAACAGTGAGTTTTTAAGA  477

seq1  TGTTTATTGAACTTTCTGTGAAAACCCAAACCACTAGATTTCAGTTCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGAACTTTCTGTGAAAACCCAAACCACTAGATTTCAGTTCTCA  527

seq1  AGTAGTTGGCATACTGTTGTTATATAAGTTATTGTTCAATCAATTGTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTGGCATACTGTTGTTATATAAGTTATTGTTCAATCAATTGTGAT  577

seq1  TTTTTTCATTAAAATGAATCAAATAATTATTTCAATTTCCTATAGGGCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATTAAAATGAATCAAATAATTATTTCAATTTCCTATAGGGCCC  627

seq1  ATTTTTTGCATATGAGGGAGTAGTTTGCTTTGAAACTCCTAGATAACTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGCATATGAGGGAGTAGTTTGCTTTGAAACTCCTAGATAACTAT  677

seq1  TTAAAATATATATGTCATGATAAATAATGCAAATGTGTATATTATAGCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATATATGTCATGATAAATAATGCAAATGTGTATATTATAGCAC  727

seq1  ACATATAAATATGTTATATGTAAACACATATATGTATTTTATATTTGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAATATGTTATATGTAAACACATATATGTATTTTATATTTGAGG  777

seq1  GCACTACTAGGAGTTGAATAAAGGTCTCATATATGCTTAGCCAGGATTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTAGGAGTTGAATAAAGGTCTCATATATGCTTAGCCAGGATTCT  827

seq1  ACCAATGAAGTGACATCCGCATTTGCCTCTCAAAAGACATTTTGGTCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAAGTGACATCCGCATTTGCCTCTCAAAAGACATTTTGGTCATG  877

seq1  TTTATTCGAGGTACCTTAAATGTCAGTCTTCAAAGATGTCATATTAATAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCGAGGTACCTTAAATGTCAGTCTTCAAAGATGTCATATTAATAC  927

seq1  AGTTATATCTAAGGTAGACTTCTGCACTGATGTATGTTTCATCAATTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATCTAAGGTAGACTTCTGCACTGATGTATGTTTCATCAATTCTA  977

seq1  GAAAACCTACAATTTCCTCAAATATTGCCTGTTCTCCAGGCTACCTTTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTACAATTTCCTCAAATATTGCCTGTTCTCCAGGCTACCTTTCT  1027

seq1  AACCATGAAGTGAATTAATTTTTAATGTCTTAATATATCTGCCAATACAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAAGTGAATTAATTTTTAATGTCTTAATATATCTGCCAATACAC  1077

seq1  TGAACTTATTTTTCATGTTATTGTTCTTTAGGTAATTTTTTTCCATATTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTATTTTTCATGTTATTGTTCTTTAGGTAATTTTTTTCCATATTT  1127

seq1  ATTTTCCAGTTTTGAATTC  1167
      |||||||||||||||||||
seq2  ATTTTCCAGTTTTGAATTC  1146

seq1: chr4_99345757_99346493
seq2: B6Ng01-151C09.g_380_1106

seq1  TTGTGAGGTATTCTCCATGTTAGGCAGGATGATGATCATGCTTGGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGTATTCTCCATGTTAGGCAGGATGATGATCATGCTTGGTTTCA  50

seq1  TTTGGAAATTCAACATGACTTGAGGGGATCTGATTGGGTGCCAAGTTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAATTCAACATGACTTGAGGGGATCTGATTGGGTGCCAAGTTGAC  100

seq1  AAGGAGTAATTTGTGATAGCTAATCTTGGTTATCAATTTGACTAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAATTTGTGATAGCTAATCTTGGTTATCAATTTGACTAGCTCTG  150

seq1  GAATCAGGTAAAACTCAACCTACTGGGAACACCTGTAAGGGACTTCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGGTAAAACTCAACCTACTGGGAACACCTGTAAGGGACTTCCTTG  200

seq1  GTGAGATTACAAGAAGCAGAAAGACTCACCTTCTGGTGTCAGCCCAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATTACAAGAAGCAGAAAGACTCACCTTCTGGTGTCAGCCCAGATA  250

seq1  AAAGAACATGAACAAAAAAAATCTTTGCTTGTCTGTCTGCTTGCCTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATGAACAAAAAAAATCTTTGCTTGTCTGTCTGCTTGCCTTTGC  300

seq1  TTTTTTTTTTTTTTTAATTAAAAAAAATTTTCGGGCTGGAGAGATGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAATTAAAAAAAATTTTCGGGCTGGAGAGATGGCTC  350

seq1  AGTGGTTAAGGCCACTGACTGCTTTACCAGAGGCCCTGAGTTCAATTCCC  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTGGTTAAGGCCACTGACTGCTTTACCAGAGGCCCTGAGTTCATTTCCC  400

seq1  AGCTACCACATGGTGACTCACAACCATCTGTAATGGGACCTGATGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCACATGGTGACTCACAACCATCTGTAATGGGACCTGATGCCCTC  450

seq1  -TTCTGGTGAGTCTGAAGACAGCTATAGTGTACTCATGTACATAAAATAC  499
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTGAGTCTGAAGACAGCTATAGTGTACTCATGTACATAAAATAC  500

seq1  ATGAGTTGGTTGAGAGATCAGCTCAACCCTCATCAGAAGTGCTTCTTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGGTTGAGAGATCAGCTCAACCCTCATCAGAAGTGCTTCTTCTT  550

seq1  TGCATGGATGGTAATTAACACAGAGGTCCACAGCTGGACAATAGCGCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGATGGTAATTAACACAGAGGTCCACAGCTGGACAATAGCGCAGA  600

seq1  GAGCAACTTTGGAACACTCAGTCCTAAATGGGATGTCTTCATGAAACCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTTTGGAACACTCAGTCCTAAATGGGATGTCTTCATGAAACCTC  650

seq1  TGACCTCAAAGCTCAGGGTCTATGCAGAAGAGGAGGAGGAAGGACTTCAG  699
      ||| |||||||||||  ||||||||||||||    |||  | ||||||||
seq2  TGA-CTCAAAGCTCA--GTCTATGCAGAAGA----GAGAGAAGACTTCAG  693

seq1  AAAATGTCCGAAGTGCTGGGTAACTCCGAGGAAATGGG  737
      ||||||| ||||||||||||| ||||||||  ||||||
seq2  AAAATGT-CGAAGTGCTGGGT-ACTCCGAG--AATGGG  727