BAC Information

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BAC

Clone NameB6Ng01-151H17
Chromosome4 (Build37)
Map Location 17,810,394 - 17,984,900
singlet/doubletdoublet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H17.bB6Ng01-151H17.g
ACCDH947289DH947290
length1,026273
definitionDH947289|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H17, 5' end.DH947290|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,810,394 - 17,811,437)(17,984,628 - 17,984,900)
sequence
gaattcttttcaaaaactgcagtgtttctttgaggtgagcactgattttt
tttttttttttttttaaggaacattagaaaaatatctctcattcagactt
tgctccacagaaacacaaaggtcaccagccaagtacttacatttctataa
gtatttgaaaatactgtttcatgatatgtcctcaacagtataacatttta
aataaaactgtctaggagtaatgctccctggactccatgtttgacccata
cattctatcactctatatattttttctttttccattccattttattttcc
caaacatggttgcaggtacttagagaattttttttttctgaaattgttgg
gtttcttgttttttctactgttttttttcaaagtccttgaaaattgcaca
gtcatcactgattgtaaaatcttttgaggaggaggagaataattttaaaa
gtactcagttttatagaatgtagaggtcatgtaacactattctaagtaga
tattaagaatcaaacaaatatgctcttgctttttttttaacatgagtgaa
atattaactttaccaaaaagaaataaatgcaatcacatccatattaagca
cataaactcagaagtccataatacattttggaagcttatagataatttga
attttatttccagatgttaacttagtgaattgtgactcaagcccatatgg
cctatctgaaagcttattttgtgtgcattcctgtgtatgccagagttatg
ccttgaagatatttttatctaatagaatattgaaatctttacaaccttct
tatagacattccactgcattgcaagtccctttatatgtccagttttggaa
acttaggttttgtcatgccaattgaatctcaagcagttggaatagaaact
gctctacttcttacatcatatttagcatcatagtttcagctcatttccca
tatcttatatttcttttctatatgtgcttataaaaaacatatggtgaaac
atgatatactgttggagtgtgtagaa
acagcagctatggttatctgcacaagatcaagtctgctgaaaactccagc
atcaattgagtagacctctccagttcccaccccttattgtagagctattg
acagcactattaaaaaaggagaaaatacaaagctcggggtgagatatcag
aggcatagttggaagtagatattattatacctcattgtatatatggatga
aattcttaagaattaaaaaaagaacttaaatgaaccccaacaatatctac
tttggtttttgtcctgtatatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17810394_17811437
seq2: B6Ng01-151H17.b_43_1068

seq1  GAATTCTTTTCAAAAACTGCAGTGTTTCTTTGAGGTGAGCACTGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCAAAAACTGCAGTGTTTCTTTGAGGTGAGCACTGATTTTT  50

seq1  TTTTTTTTTTTTTTTAAGGAACATTAGAAAAATATCTCTCATTCAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAAGGAACATTAGAAAAATATCTCTCATTCAGACTT  100

seq1  TGCTCCACAGAAACACAAAGGTCACCAGCCAAGTACTTACATTTCTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACAGAAACACAAAGGTCACCAGCCAAGTACTTACATTTCTATAA  150

seq1  GTATTTGAAAATACTGTTTCATGATATGTCCTCAACAGTATAACATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAAAATACTGTTTCATGATATGTCCTCAACAGTATAACATTTTA  200

seq1  AATAAAACTGTCTAGGAGTAATGCTCCCTGGACTCCATGTTTGACCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTGTCTAGGAGTAATGCTCCCTGGACTCCATGTTTGACCCATA  250

seq1  CATTCTATCACTCTATATATTTTTTCTTTTTCCATTCCATTTTATTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATCACTCTATATATTTTTTCTTTTTCCATTCCATTTTATTTTCC  300

seq1  CAAACATGGTTGCAGGTACTTAGAGAATTTTTTTTTTCTGAAATTGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGGTTGCAGGTACTTAGAGAATTTTTTTTTTCTGAAATTGTTGG  350

seq1  GTTTCTTGTTTTTTCTACTGTTTTTTTTCAAAGTCCTTGAAAATTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTTTTTTCTACTGTTTTTTTTCAAAGTCCTTGAAAATTGCACA  400

seq1  GTCATCACTGATTGTAAAATCTTTTGAGGAGGAGGAGAATAATTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACTGATTGTAAAATCTTTTGAGGAGGAGGAGAATAATTTTAAAA  450

seq1  GTACTCAGTTTTATAGAATGTAGAGGTCATGTAACACTATTCTAAGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAGTTTTATAGAATGTAGAGGTCATGTAACACTATTCTAAGTAGA  500

seq1  TATTAAGAATCAAACAAATATGCTCTTGCTTTTTTTTTAACATGAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAATCAAACAAATATGCTCTTGCTTTTTTTTTAACATGAGTGAA  550

seq1  ATATTAACTTTACCAAAAAGAAATAAATGCAATCACATCCATATTAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACTTTACCAAAAAGAAATAAATGCAATCACATCCATATTAAGCA  600

seq1  CATAAACTCAGAAGTCCATAATACATTTTGGAAGCTTATAGATAATTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTCAGAAGTCCATAATACATTTTGGAAGCTTATAGATAATTTGA  650

seq1  ATTTTATTTCCAGATGTTAACTTAGTGAATTGTGACTCAAGCCCATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCCAGATGTTAACTTAGTGAATTGTGACTCAAGCCCATATGG  700

seq1  CCTATCTGAAAGCTTATTTTGTGTGCATTCCTGTGTATGCCAGAGTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGAAAGCTTATTTTGTGTGCATTCCTGTGTATGCCAGAGTTATG  750

seq1  CCTTGAAGATATTTTTATCTAATAGAATATTGAAATCTTTACAACCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGATATTTTTATCTAATAGAATATTGAAATCTTTACAACCTTCT  800

seq1  TATAGACATTCCACTGCATTGCAAGTCCCTTTATATGTCCAGTTTTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACATTCCACTGCATTGCAAGTCCCTTTATATGTCCAGTTTTGGAA  850

seq1  ACTTAGGTTTTGTCATGCCAATTGAATCTCAAGCAGTTGGAATAGAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTTTTGTCATGCCAATTGAATCTCAAGCAGTTGGAATAGAAACT  900

seq1  GCTCTACTTCTTACATCATATTTTAGCATCATAGTTTCAGCTTCATTTTC  950
      |||||||||||||||||||| |||||||||||||||||||| ||| ||||
seq2  GCTCTACTTCTTACATCATA-TTTAGCATCATAGTTTCAGC-TCA-TTTC  947

seq1  CCATTATTCTTTATATTTTCTTTTTCTTAATTATGTGCTTTATAAAAAAC  1000
      ||| |||   ||||||||   ||||||    ||||||| |||||||||||
seq2  CCA-TAT--CTTATATTT--CTTTTCT---ATATGTGC-TTATAAAAAAC  988

seq1  ATATGTTGAAAAACATTGATTAATACTGTTTGGAGTGTGTAGAA  1044
      ||||| ||||| |   ||||  |||||| |||||||||||||||
seq2  ATATGGTGAAACA---TGAT--ATACTG-TTGGAGTGTGTAGAA  1026

seq1: chr4_17984628_17984900
seq2: B6Ng01-151H17.g_71_343 (reverse)

seq1  TAATATACAGGACAAAAACCAAAGTAGATATTGTTGGGGTTCATTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACAGGACAAAAACCAAAGTAGATATTGTTGGGGTTCATTTAAGT  50

seq1  TCTTTTTTTAATTCTTAAGAATTTCATCCATATATACAATGAGGTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTAATTCTTAAGAATTTCATCCATATATACAATGAGGTATAAT  100

seq1  AATATCTACTTCCAACTATGCCTCTGATATCTCACCCCGAGCTTTGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTACTTCCAACTATGCCTCTGATATCTCACCCCGAGCTTTGTATT  150

seq1  TTCTCCTTTTTTAATAGTGCTGTCAATAGCTCTACAATAAGGGGTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTTTTAATAGTGCTGTCAATAGCTCTACAATAAGGGGTGGGAA  200

seq1  CTGGAGAGGTCTACTCAATTGATGCTGGAGTTTTCAGCAGACTTGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGGTCTACTCAATTGATGCTGGAGTTTTCAGCAGACTTGATCTT  250

seq1  GTGCAGATAACCATAGCTGCTGT  273
      |||||||||||||||||||||||
seq2  GTGCAGATAACCATAGCTGCTGT  273