BAC Information

Click to search

BAC

Clone NameB6Ng01-156N04
Chromosome4 (Build37)
Map Location 53,575,814 - 53,769,065
singlet/doubletdoublet
Overlap geneSlc44a1, Fsd1l, LOC666483, Fcmd
Upstream gene4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197
Downstream geneTal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N04.bB6Ng01-156N04.g
ACCDH951226DH951227
length1,113958
definitionDH951226|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N04, 5' end.DH951227|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,767,936 - 53,769,065)(53,575,814 - 53,576,776)
sequence
gaattccatatgcataccactatgctcagccgacaattcaaataaatgaa
aatggacagtttaagtccccctcgcatctgacttccttcatccatgttag
tatatctggtaactcattccccttcagcactcagtagtattccattgtgt
gaatacacaatgaatgcagctgctcaccagaaggtgaacagttggacgtc
tgggtagcatggttaaaaccaaaccattctgcttatctgaatataactgt
taacacctgtacataagtcttgtaatggaaatgtctctttagacactatc
aaattagtatcttacagaattatgtttaacaaaatacatgtttgaaaaaa
ttacaactttgacttcccatagatgttttgtagtacaattttctccttgc
aataaagcaaggctcactttagaagaaactgcctcttcagtttctccctc
agtcttcctcttacacctgctcccccctccctccctgtctggagattcaa
ttacggagacccaggatataatcggtatattacaaaatacaaagatataa
atagagcaggagatgggatcacttgggaaaagccaacactttaaatatcc
tcatttaaagaaattactcaagtctgccttttagctttgcggctgtatgt
cctgcagagacagatgtgtttcttgagagctggagctacaggagcacagc
atcagccttgggctgggagtgcacgagggacagctccgaagctaactcca
taacacagagacaagcacaatgacctagcttcactctttcacctctcctg
ctcaccacacagcagagagctgattcagagtcaagcggcacctaggtttc
actcagcctgagagttatcaagacggactttatctgtaatttagggcaga
caggtttgcaaaggactctaaaacactcagcagaaagaacttgtgtgggg
cttagggagatctatgacactcggagggagggaagatcatgtctacaggt
actaaacttacagagagagcagtcatgccgtgactgggagagcaggacat
gaggggtggcaatctggaatcactggtggcattctaactcctgataaaat
aagatcaaagcca
gaattctctcctacagccataatgagagtgtcagagtgggtgatggaagg
aaggttttatatctacggattgcaatccatcccagccaatcttccttcag
agtactgttgaccacactaaggttggatccttaaagttcacctactgact
gaaacctaagaagatccccagttaatgccgtgcactccatgttttgcagg
agtttgtggaaaacagtaggaaagcaatgaaagaagccggcaaaggaggc
gctgcggacgcccgagagctaaagccgatggtaggtggtgaggaggaggc
ggccgccctccacgactttccctttcacttcttctctgtctgtgtcttca
ctgactgcacatcctctggagaagccttggttgtctgtatcacgcaggac
atgctgctctttctgtttgcctgcttacccatcacttggatggcagaggt
cctgtcacagctgagactaccatctgtgaaagtgagctgaaaggaacagc
ggcctgcccagcactcgggctggggggacactcgcctccgagtcaaagct
ggttttcttgctgtcagtatttagttctcgtcccacgggacacgtcgggg
tgactttgaactggcaggtcatttcgatcattctagaaggtgatcatgag
agttcctttcagcttgctgaagttcatattccctccttttttaaaaacag
tattgttctgtttacattgctgtcctgtcctgcgggactttctcttctct
tgctcagactgtactttctttgctgttgtatttctgtttgtttatttggg
ttttgtttgagttgttttttgcctacaaacaaggcgatttccaatcaatg
tccacttgccatctcggtagacagtcttttcactctttcattggaaaaga
ttcatgtcctccaactgtacaggaatagatttatatggtagatgaacaat
cttaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53767936_53769065
seq2: B6Ng01-156N04.b_47_1159 (reverse)

seq1  TGGCTTTTGATCCTTTATTTTAATCCAGGAGTTTAAGAATGCCACCAGTG  50
      |||| |||||||  ||||||||   ||||||||  |||||||||||||||
seq2  TGGC-TTTGATC--TTATTTTA--TCAGGAGTT--AGAATGCCACCAGTG  43

seq1  ATTCCAGATTGCCACCCCTCATTGTCCTGGCTCTTCCCAGTCAACGGCAT  100
      ||||||||||||||||||||| |||||| |||| |||||||| |||||| 
seq2  ATTCCAGATTGCCACCCCTCA-TGTCCT-GCTC-TCCCAGTC-ACGGCA-  88

seq1  TGACTTGCTCTCTCTGTAAAGTTTAGTACCCTGTAGACATGATCTTCCCT  150
      |||| |||||||||||| |||||||||| |||||||||||||||||||||
seq2  TGAC-TGCTCTCTCTGT-AAGTTTAGTA-CCTGTAGACATGATCTTCCCT  135

seq1  CCCTCCGAGTTGTCATAGATCTCCCCTAAGCCCCACACAAGTTCTTTCTG  200
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CCCTCCGAG-TGTCATAGATCT-CCCTAAGCCCCACACAAGTTCTTTCTG  183

seq1  CTGAGTGTTTTAGAGTCCTTTGCAAACCTGTCTGCCCTAAATTACAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTTTAGAGTCCTTTGCAAACCTGTCTGCCCTAAATTACAGATA  233

seq1  AAGTCCGTCTTGATAACTCTCAGGCTGAGTGAAACCTAGGTGCCGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCGTCTTGATAACTCTCAGGCTGAGTGAAACCTAGGTGCCGCTTGA  283

seq1  CTCTGAATCAGCTCTCTGCTGTGTGGTGAGCAGGAGAGGTGAAAGAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATCAGCTCTCTGCTGTGTGGTGAGCAGGAGAGGTGAAAGAGTGA  333

seq1  AGCTAGGTCATTGTGCTTGTCTCTGTGTTATGGAGTTAGCTTCGGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTCATTGTGCTTGTCTCTGTGTTATGGAGTTAGCTTCGGAGCTG  383

seq1  TCCCTCGTGCACTCCCAGCCCAAGGCTGATGCTGTGCTCCTGTAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGTGCACTCCCAGCCCAAGGCTGATGCTGTGCTCCTGTAGCTCCA  433

seq1  GCTCTCAAGAAACACATCTGTCTCTGCAGGACATACAGCCGCAAAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAAGAAACACATCTGTCTCTGCAGGACATACAGCCGCAAAGCTAA  483

seq1  AAGGCAGACTTGAGTAATTTCTTTAAATGAGGATATTTAAAGTGTTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGACTTGAGTAATTTCTTTAAATGAGGATATTTAAAGTGTTGGCT  533

seq1  TTTCCCAAGTGATCCCATCTCCTGCTCTATTTATATCTTTGTATTTTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGTGATCCCATCTCCTGCTCTATTTATATCTTTGTATTTTGTA  583

seq1  ATATACCGATTATATCCTGGGTCTCCGTAATTGAATCTCCAGACAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCGATTATATCCTGGGTCTCCGTAATTGAATCTCCAGACAGGGAG  633

seq1  GGAGGGGGGAGCAGGTGTAAGAGGAAGACTGAGGGAGAAACTGAAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGAGCAGGTGTAAGAGGAAGACTGAGGGAGAAACTGAAGAGGC  683

seq1  AGTTTCTTCTAAAGTGAGCCTTGCTTTATTGCAAGGAGAAAATTGTACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTCTAAAGTGAGCCTTGCTTTATTGCAAGGAGAAAATTGTACTA  733

seq1  CAAAACATCTATGGGAAGTCAAAGTTGTAATTTTTTCAAACATGTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATCTATGGGAAGTCAAAGTTGTAATTTTTTCAAACATGTATTTT  783

seq1  GTTAAACATAATTCTGTAAGATACTAATTTGATAGTGTCTAAAGAGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACATAATTCTGTAAGATACTAATTTGATAGTGTCTAAAGAGACAT  833

seq1  TTCCATTACAAGACTTATGTACAGGTGTTAACAGTTATATTCAGATAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTACAAGACTTATGTACAGGTGTTAACAGTTATATTCAGATAAGC  883

seq1  AGAATGGTTTGGTTTTAACCATGCTACCCAGACGTCCAACTGTTCACCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTTTGGTTTTAACCATGCTACCCAGACGTCCAACTGTTCACCTT  933

seq1  CTGGTGAGCAGCTGCATTCATTGTGTATTCACACAATGGAATACTACTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGCAGCTGCATTCATTGTGTATTCACACAATGGAATACTACTGA  983

seq1  GTGCTGAAGGGGAATGAGTTACCAGATATACTAACATGGATGAAGGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAGGGGAATGAGTTACCAGATATACTAACATGGATGAAGGAAGT  1033

seq1  CAGATGCGAGGGGGACTTAAACTGTCCATTTTCATTTATTTGAATTGTCG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCGAGGGGGACTTAAACTGTCCATTTTCATTTATTTGAATTGTCG  1083

seq1  GCTGAGCATAGTGGTATGCATATGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  GCTGAGCATAGTGGTATGCATATGGAATTC  1113

seq1: chr4_53575814_53576776
seq2: B6Ng01-156N04.g_68_1025

seq1  GAATTCTCTCCTACAGCCATAATGAGAGTGTCAGAGTGGGTGATGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTACAGCCATAATGAGAGTGTCAGAGTGGGTGATGGAAGG  50

seq1  AAGGTTTTATATCTACGGATTGCAATCCATCCCAGCCAATCTTCCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTATATCTACGGATTGCAATCCATCCCAGCCAATCTTCCTTCAG  100

seq1  AGTACTGTTGACCACACTAAGGTTGGATCCTTAAAGTTCACCTACTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTTGACCACACTAAGGTTGGATCCTTAAAGTTCACCTACTGACT  150

seq1  GAAACCTAAGAAGATCCCCAGTTAATGCCGTGCACTCCATGTTTTGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTAAGAAGATCCCCAGTTAATGCCGTGCACTCCATGTTTTGCAGG  200

seq1  AGTTTGTGGAAAACAGTAGGAAAGCAATGAAAGAAGCCGGCAAAGGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGAAAACAGTAGGAAAGCAATGAAAGAAGCCGGCAAAGGAGGC  250

seq1  GCTGCGGACGCCCGAGAGCTAAAGCCGATGGTAGGTGGTGAGGAGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGACGCCCGAGAGCTAAAGCCGATGGTAGGTGGTGAGGAGGAGGC  300

seq1  GGCCGCCCTCCACGACTTTCCCTTTCACTTCTTCTCTGTCTGTGTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCCCTCCACGACTTTCCCTTTCACTTCTTCTCTGTCTGTGTCTTCA  350

seq1  CTGACTGCACATCCTCTGGAGAAGCCTTGGTTGTCTGTATCACGCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCACATCCTCTGGAGAAGCCTTGGTTGTCTGTATCACGCAGGAC  400

seq1  ATGCTGCTCTTTCTGTTTGCCTGCTTACCCATCACTTGGATGGCAGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTCTTTCTGTTTGCCTGCTTACCCATCACTTGGATGGCAGAGGT  450

seq1  CCTGTCACAGCTGAGACTACCATCTGTGAAAGTGAGCTGAAAGGAACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACAGCTGAGACTACCATCTGTGAAAGTGAGCTGAAAGGAACAGC  500

seq1  GGCCTGCCCAGCACTCGGGCTGGGGGGACACTCGCCTCCGAGTCAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCCAGCACTCGGGCTGGGGGGACACTCGCCTCCGAGTCAAAGCT  550

seq1  GGTTTTCTTGCTGTCAGTATTTAGTTCTCGTCCCACGGGACACGTCGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTGCTGTCAGTATTTAGTTCTCGTCCCACGGGACACGTCGGGG  600

seq1  TGACTTTGAACTGGCAGGTCATTTCGATCATTCTAGAAGGTGATCATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGAACTGGCAGGTCATTTCGATCATTCTAGAAGGTGATCATGAG  650

seq1  AGTTCCTTTCAGCTTGCTGAAGTTCATATT-CCTCCTTTTTTAAAAACAG  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTTCCTTTCAGCTTGCTGAAGTTCATATTCCCTCCTTTTTTAAAAACAG  700

seq1  TATTGTTCTGTTTACATTGCTGTCCTGTCCTGC-GGACTTTCTCTTCTCT  748
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTGTTCTGTTTACATTGCTGTCCTGTCCTGCGGGACTTTCTCTTCTCT  750

seq1  TGCTCAGACTGTACTTTCTTTGCTGTTGTTATTTCTGTTTGTTTATTTGG  798
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCTCAGACTGTACTTTCTTTGCTGTTG-TATTTCTGTTTGTTTATTTGG  799

seq1  TTTTGTTTTGAGTTGTTTTTTGCCTACAAACAAGGCGATTTCC-ATCAAT  847
       |||  ||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTTGTTTGAGTTGTTTTTTGCCTACAAACAAGGCGATTTCCAATCAAT  849

seq1  GTCCACATGCCATCTCGGTAAGACAGTCTTTTCACACTTTCATTGTAAAA  897
      |||||| |||||||||||| ||||||||||||||| ||||||||| ||||
seq2  GTCCACTTGCCATCTCGGT-AGACAGTCTTTTCACTCTTTCATTGGAAAA  898

seq1  GGAATCATGTCCTCCAACCTGTCACAGGTAATAGATTTAGATAGGTAGAT  947
       || ||||||||||||| |||| ||||| |||||||||| || |||||||
seq2  -GATTCATGTCCTCCAA-CTGT-ACAGG-AATAGATTTATAT-GGTAGAT  943

seq1  GACTAATACTTAGGTA  963
      ||  ||| ||||||||
seq2  GAACAAT-CTTAGGTA  958