BAC Information

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BAC

Clone NameB6Ng01-159C09
Chromosome4 (Build37)
Map Location 4,651,354 - 4,788,598
singlet/doubletdoublet
Overlap geneImpad1
Upstream geneLyn, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019
Downstream geneLOC100039338, 1700012H17Rik, LOC669309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C09.bB6Ng01-159C09.g
ACCDH952901DH952902
length7321,154
definitionDH952901|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C09, 5' end.DH952902|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,651,354 - 4,651,870)(4,787,434 - 4,788,598)
sequence
gaattcttttaataaaacttgaatctgtgtggaagccatttgggcattcc
agaatggtattcctggtaaaagctacagaacagagtcaaaaggggaaaca
aaataatcctagaaaatatgacagagtctacccacagcaatgtgtttgtg
cttccaaagaagcaaactttgagaagtaatattaaaagtaagtctatatt
aatgctttattaaaatataaaatttagccgggtgtggtggcgcacgcctt
taatcccagcactggggaggcagaggcaggcagatttctgagttcgaggc
cagcctggtctacaaagtgaattccaggacagccagggctatacagagaa
accctgtctcgaaaaacctatatatatacatatatatatacatatatata
tgtatatatatatgtatatatatatatacatatatatatatatacatata
tatatatatatatatatatgtatatatatatgtatatatatgtgtatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatttttttatatatttttatata
tatatatatttttttatatatatatatatata

gaattccttaaaatgaacagcaatatataacatccagcttttaaaaccat
cctggaattaatatatttatattctatacttaaacattacaagttttggt
ttaaaaattagtaacaatattgcataaattagaatccaagttctagcttg
atattttgtaacatttctggagatacttttactgaataaataatctcaag
ttaatgaggtaaattagtcaaacactcatcacagattacagaacaaaaac
tgttgttctctatgaaaagtactaagtttattttcaattctcctatataa
atttaaaacaaatttgaaatagcttttcaatcatagacttacccttcaac
tcgataacaatcatattctattttatattttattgtaaaaattttgaaaa
taaatgaaaacatcacacactaaaactaaccagactttagaaccaacttt
agaacaattgtgttctgtgcccacttgttatactttacctgaaattaccc
aatctcttataggtgtccagcagacttcatcaaatacttctagtttatat
attttgcaatctaatatatgctttttatcagtatgtcagcattcttacta
caaaatctgatgtgactcaaaaaatgaaataaaatattcatctaacaaag
ggttttctcctctaacaaagtatgcaaaaacattgatggaaatccatgca
ggaaatatttgttaataatggtattcaagtgattatttatttctagttat
gctactaaatcaaatctttgagagtaaagatatctataccaagtatagtt
ttagattagatatgttgaacatctactacagaaagaattgtttcattttc
ttttccattgctatgataaaacactctgacaaagaaactgaagggaggaa
gggtttaatcctgactcacaattctcatgtgcagtgattatgggagtcca
cacagcagaaggctgaagcagctggtcacatcatctccacatcaggaatc
agtaatgaatgcatgcaacctagcacttagtgactgtcttcctccttata
ctctagggattcctggcctaggaatgggttaccaacagggtgacctcttt
ctcacctcattagccgatcaaatatttcctacgactgtgtccgaagctga
gcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4651354_4651870
seq2: B6Ng01-159C09.b_49_561

seq1  GAATTCTTTTAATAAAACTTGAATCTGTGTGGAAGCCATTTGGGCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATAAAACTTGAATCTGTGTGGAAGCCATTTGGGCATTCC  50

seq1  AGAATGGTATTCCTGGTAAAAGCTACAGAACAGAGTCAAAAGGGGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTATTCCTGGTAAAAGCTACAGAACAGAGTCAAAAGGGGAAACA  100

seq1  AAATAATCCTAGAAAATATGACAGAGTCTACCCACAGCAATGTGTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCCTAGAAAATATGACAGAGTCTACCCACAGCAATGTGTTTGTG  150

seq1  CTTCCAAAGAAGCAAACTTTGAGAAGTAATATTAAAAGTAAGTCTATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGAAGCAAACTTTGAGAAGTAATATTAAAAGTAAGTCTATATT  200

seq1  AATGCTTTATTAAAATATAAAATTTAGCCGGGTGTGGTGGCGCACGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTATTAAAATATAAAATTTAGCCGGGTGTGGTGGCGCACGCCTT  250

seq1  TAATCCCAGCACTGGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTGGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  300

seq1  CAGCCTGGTCTACAAAGTGAATTCCAGGACAGCCAGGGCTATACAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAAAGTGAATTCCAGGACAGCCAGGGCTATACAGAGAA  350

seq1  ACCCTGTCTCGAAAAACCTATATATATACATATATATATACATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGAAAAACCTATATATATACATATATATATACATATATATA  400

seq1  TGTATATATATATGTATATATATATATACATATATATATATATACATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATATATGTATATATATATATACATATATATATATATACATATA  450

seq1  TATATATATATATATATATGTATATATATATGTATATATATGTGTATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATGTATATATATATGTATATATATGTGTATATA  500

seq1  TATGTGTATATATATAT  517
      ||    |||||||||||
seq2  TA----TATATATATAT  513


seq1: chr4_4787434_4788598
seq2: B6Ng01-159C09.g_68_1221 (reverse)

seq1  AGGCTCAGCTTCTGGACA-TGTCTGTAGGAGATTATTTTGATCAGGCTAA  49
      |||||||||||| |||||  ||| |||||| ||   ||||||| ||||||
seq2  AGGCTCAGCTTC-GGACACAGTC-GTAGGAAAT--ATTTGATC-GGCTAA  45

seq1  TTGAGGT-AGAAAGAGGTGCACACTGTTGGTGACACAATTCCCTAGGCAG  98
       |||||| |||||||||| ||| |||||||| || ||  | |||||||  
seq2  -TGAGGTGAGAAAGAGGT-CACCCTGTTGGTAACCCA--TTCCTAGGCCA  91

seq1  GGAAT-CCTAGACGTATAAGAGTGAAGACAGTCAACTAAGTGCTAGGTTG  147
      ||||| |||||| |||||||   |||||||||| ||||||||||||||||
seq2  GGAATCCCTAGA-GTATAAGGAGGAAGACAGTC-ACTAAGTGCTAGGTTG  139

seq1  CATGCATTCATTACTGATTCCTGATTGTGGAGATGATGTGACCAGCTGCT  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGCATTCATTACTGATTCCTGA-TGTGGAGATGATGTGACCAGCTGCT  188

seq1  TCAAGCTTCTGCTGTGTGGACTCCCATAATCACTGCACATGAGAATTGTG  247
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTCTGCTGTGTGGACTCCCATAATCACTGCACATGAGAATTGTG  238

seq1  AGTCAGGATTAAACCCTTCCTCCCTTCAGTTTCTTTTGTCAGAGTGTTTT  297
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTCAGGATTAAACCCTTCCTCCCTTCAGTTTC-TTTGTCAGAGTGTTTT  287

seq1  ATCATAGCAATGGAAAAAGAAAATGAAACAATTCTTTCTGTAGTAGATGT  347
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCAATGG-AAAAGAAAATGAAACAATTCTTTCTGTAGTAGATGT  336

seq1  TCAACATATCTAATCTAAAACTATACTTGGTATAGATATCTTTACTCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATATCTAATCTAAAACTATACTTGGTATAGATATCTTTACTCTCA  386

seq1  AAGATTTGATTTAGTAGCATAACTAGAAATAAATAATCACTTGAATACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGATTTAGTAGCATAACTAGAAATAAATAATCACTTGAATACCA  436

seq1  TTATTAACAAATATTTCCTGCATGGATTTCCATCAATGTTTTTGCATACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACAAATATTTCCTGCATGGATTTCCATCAATGTTTTTGCATACT  486

seq1  TTGTTAGAGGAGAAAACCCTTTGTTAGATGAATATTTTATTTCATTTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAGGAGAAAACCCTTTGTTAGATGAATATTTTATTTCATTTTTT  536

seq1  GAGTCACATCAGATTTTGTAGTAAGAATGCTGACATACTGATAAAAAGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACATCAGATTTTGTAGTAAGAATGCTGACATACTGATAAAAAGCA  586

seq1  TATATTAGATTGCAAAATATATAAACTAGAAGTATTTGATGAAGTCTGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGATTGCAAAATATATAAACTAGAAGTATTTGATGAAGTCTGCT  636

seq1  GGACACCTATAAGAGATTGGGTAATTTCAGGTAAAGTATAACAAGTGGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTATAAGAGATTGGGTAATTTCAGGTAAAGTATAACAAGTGGGC  686

seq1  ACAGAACACAATTGTTCTAAAGTTGGTTCTAAAGTCTGGTTAGTTTTAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACAATTGTTCTAAAGTTGGTTCTAAAGTCTGGTTAGTTTTAGT  736

seq1  GTGTGATGTTTTCATTTATTTTCAAAATTTTTACAATAAAATATAAAATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGTTTTCATTTATTTTCAAAATTTTTACAATAAAATATAAAATA  786

seq1  GAATATGATTGTTATCGAGTTGAAGGGTAAGTCTATGATTGAAAAGCTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGATTGTTATCGAGTTGAAGGGTAAGTCTATGATTGAAAAGCTAT  836

seq1  TTCAAATTTGTTTTAAATTTATATAGGAGAATTGAAAATAAACTTAGTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTGTTTTAAATTTATATAGGAGAATTGAAAATAAACTTAGTAC  886

seq1  TTTTCATAGAGAACAACAGTTTTTGTTCTGTAATCTGTGATGAGTGTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAGAGAACAACAGTTTTTGTTCTGTAATCTGTGATGAGTGTTTG  936

seq1  ACTAATTTACCTCATTAACTTGAGATTATTTATTCAGTAAAAGTATCTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTACCTCATTAACTTGAGATTATTTATTCAGTAAAAGTATCTCC  986

seq1  AGAAATGTTACAAAATATCAAGCTAGAACTTGGATTCTAATTTATGCAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTACAAAATATCAAGCTAGAACTTGGATTCTAATTTATGCAAT  1036

seq1  ATTGTTACTAATTTTTAAACCAAAACTTGTAATGTTTAAGTATAGAATAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACTAATTTTTAAACCAAAACTTGTAATGTTTAAGTATAGAATAT  1086

seq1  AAATATATTAATTCCAGGATGGTTTTAAAAGCTGGATGTTATATATTGCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTAATTCCAGGATGGTTTTAAAAGCTGGATGTTATATATTGCT  1136

seq1  GTTCATTTTAAGGAATTC  1165
      ||||||||||||||||||
seq2  GTTCATTTTAAGGAATTC  1154


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