BAC Information

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BAC

Clone NameB6Ng01-161F18
Chromosome4 (Build37)
Map Location 18,380,597 - 18,543,896
singlet/doubletdoublet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161F18.bB6Ng01-161F18.g
ACCDH954491DH954492
length1,1221,090
definitionDH954491|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F18, 5' end.DH954492|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,542,743 - 18,543,896)(18,380,597 - 18,381,690)
sequence
gaattcttcttaggactctatctttctccttgtaaattattaatgagtgt
caatatggctgttgggaaaattagaacacttggcatctaacagttgcttc
aactacattcactcaacttacacctgtaggcttagaggcgtgttagaagc
acagggtgattgtgcttttcagtaattatgctgtgttgagtcaatcagta
gaggatgtgcaaacctgcactattgtatagtagagagtactgtgtcaaca
tcagtaaaattaactgatgacacctggaagcaaagggtagcctgtttcaa
cttatgtttgtttaaataatagatttagatataggtaataaatactagac
tattcttggctctcactttttttttcatttaccaaaacctgtatacttaa
gttaatacaagattagtacatacatttaaaggaattattaatttaaaaaa
gtataggacttctttgggtaaaggaaaaactagcccttagattatttaaa
tattgtactgtgatactaccaattaataaatctgaaagaatactatctca
aatatagtctatctgttttaaagatgatttaataaacatatctaaaggtc
gtaaataaaaataagatattttcattgacaataataatatttgcaattac
ctctttaaaatacttatataatttcttctataatctagaaaatattactg
atttctagattgtattaattactggtagaactcccccacaattctctcaa
gttcaataagcaaagagaaaatattgttaaaaatgaatgatcttccattg
cttcagtttgagcatgtttttgaaatcacgtacttttctatatccttata
tgtatggcaataaatttggagcttcacacattttaaatatttatttaaca
cttgtgttaatgatatttttttgagaaaaattgttaataaaacctcctgg
aagggaaaatatgtcactttattatgcatggagtgagatagaacataaaa
tttatgaaggtatctgtctttgaaagttcaatatttattaccatgttcat
gagctcagtgctaggtctactatggcataagagcattttacttccctagg
acgcgaagttttggaattatga
gaattccagacaaaaatccaatacttgtagttcatataacattattttgt
ttgtttttgccaaaatttagtggacagttaagtgagggtttgggatctga
accaaatattaaaatgataaaactatttatttatctgtcaaaaccagtag
gtgcttttacatgaaggaggttaaaacaaaaagtttttttttttttttat
aaaaccttcccactttccacaatgttcagggaacatacttaaagtgcaac
taaaaggaatagaggagccagaggtttggaggaattctgggagttgtcct
ttagttattggcatgcttgtcatacacatgaactcatagtgactgtggat
acctatccaaggcttgcacaaaatcaagccagttacatttccagcatgga
tagagaaggagtgatgagagccctgagtctcagatgagctaatggcagct
gatggctgctgggtaggagattgctactttcctttgggcagaggtaatca
gtgataggttattcatccttcaatggaaggccccaaagcagtactatcta
aattgagtggattatgtaaaagaagagatagagaatataaatttggggat
ttgatgcagggcagcagaagatgaatatgatgtatgaaatttttgaaaat
taagtttaaaatataaaaataaaacaagcactgacttagcttgttttaat
gcaatatacagaactgatataattcaaattatttgattgcctaatttatg
gcacaattttgactataaatatggaataaatatatttattgcatatttta
attacagttgaattattaatctacagctgcatattcttattaaagaacaa
atttggagtttaaattttagtagccaaacgagtgcctagacttgaagatc
atatcgtattgatattttcacgctcctatgttagttaaacttgccaacta
agggacatttcctttcctccaaatatatattttggtggagacaatattaa
ggctttcctgtctaccttatttgaaattaaatatcacatttcataaggaa
atcttgtaaggtaatataccgatcttagccctttatcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18542743_18543896
seq2: B6Ng01-161F18.b_46_1167 (reverse)

seq1  TCATAAATCTCCAAAAACCCTTTCTGCGTCCCTAGGGAAAGTTAAAAATG  50
      ||||||   |||||||   |||   |||| ||||||| ||||  ||||||
seq2  TCATAA--TTCCAAAA---CTT--CGCGT-CCTAGGG-AAGT--AAAATG  39

seq1  CTTCCTTATGCCATAAAGTAGACGCTAAGCACTGAAGCTTCCATGGAAAA  100
      ||  ||||||||||  ||||||| || ||||||| ||||  ||||   ||
seq2  CT--CTTATGCCAT--AGTAGAC-CT-AGCACTG-AGCT--CATG---AA  77

seq1  CACTGGGTAATAAATATTTGAAAACTCTCAAAGACAGGATACCTTTCATT  150
      ||   |||||||||||||    |||| ||||||||| |||||| |||| |
seq2  CA--TGGTAATAAATATT---GAACTTTCAAAGACA-GATACC-TTCA-T  119

seq1  AAATTTTATGTTCTATCCTCACTCCATGCAATAATAAAGTGACATATTTT  200
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  AAATTTTATGTTCTAT-CTCACTCCATGC-ATAATAAAGTGACATATTTT  167

seq1  CCCTTCCAGGAGGTTTTATTAACAATTTTTCTCAAAAAAATATCA-TAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCTTCCAGGAGGTTTTATTAACAATTTTTCTCAAAAAAATATCATTAAC  217

seq1  ACAAGTGTTAAATAAATATTTAAAATGTGTGAAGCTCCAAATTTATTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTTAAATAAATATTTAAAATGTGTGAAGCTCCAAATTTATTGCC  267

seq1  ATACATATAAGGATATAGAAAAGTACGTGAATTTCAAAAACATGCTCAAA  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATACATATAAGGATATAGAAAAGTACGTG-ATTTCAAAAACATGCTCAAA  316

seq1  CTGAAGCAATGGAAGATCATTCATTTTTAACAATATTTTCTCTTTGCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCAATGGAAGATCATTCATTTTTAACAATATTTTCTCTTTGCTTA  366

seq1  TTGAACTTGAGAGAATTGT-GGGGAGTTCTACCAGTAATTAATACAATCT  448
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGAACTTGAGAGAATTGTGGGGGAGTTCTACCAGTAATTAATACAATCT  416

seq1  AGAAATCAGTAATATTTTCTAGATTATAGAAGAAATTATATAAGTATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAGTAATATTTTCTAGATTATAGAAGAAATTATATAAGTATTTT  466

seq1  AAAGAGGTAATTGCAAATATTATTATTGTCAATGAAAATATCTTATTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTAATTGCAAATATTATTATTGTCAATGAAAATATCTTATTTTT  516

seq1  ATTTACGACCTTTAGATATGTTTATTAAATCATCTTTAAAACAGATAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACGACCTTTAGATATGTTTATTAAATCATCTTTAAAACAGATAGAC  566

seq1  TATATTTGAGATAGTATTCTTTCAGATTTATTAATTGGTAGTATCACAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGAGATAGTATTCTTTCAGATTTATTAATTGGTAGTATCACAGT  616

seq1  ACAATATTTAAATAATCTAAGGGCTAGTTTTTCCTTTACCCAAAGAAGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTAAATAATCTAAGGGCTAGTTTTTCCTTTACCCAAAGAAGTC  666

seq1  CTATACTTTTTTAAATTAATAATTCCTTTAAATGTATGTACTAATCTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTTTTTTAAATTAATAATTCCTTTAAATGTATGTACTAATCTTGT  716

seq1  ATTAACTTAAGTATACAGGTTTTGGTAAATGAAAAAAAAAGTGAGAGCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTAAGTATACAGGTTTTGGTAAATGAAAAAAAAAGTGAGAGCCA  766

seq1  AGAATAGTCTAGTATTTATTACCTATATCTAAATCTATTATTTAAACAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCTAGTATTTATTACCTATATCTAAATCTATTATTTAAACAAA  816

seq1  CATAAGTTGAAACAGGCTACCCTTTGCTTCCAGGTGTCATCAGTTAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTGAAACAGGCTACCCTTTGCTTCCAGGTGTCATCAGTTAATTT  866

seq1  TACTGATGTTGACACAGTACTCTCTACTATACAATAGTGCAGGTTTGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGTTGACACAGTACTCTCTACTATACAATAGTGCAGGTTTGCAC  916

seq1  ATCCTCTACTGATTGACTCAACACAGCATAATTACTGAAAAGCACAATCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTACTGATTGACTCAACACAGCATAATTACTGAAAAGCACAATCA  966

seq1  CCCTGTGCTTCTAACACGCCTCTAAGCCTACAGGTGTAAGTTGAGTGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTTCTAACACGCCTCTAAGCCTACAGGTGTAAGTTGAGTGAAT  1016

seq1  GTAGTTGAAGCAACTGTTAGATGCCAAGTGTTCTAATTTTCCCAACAGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGAAGCAACTGTTAGATGCCAAGTGTTCTAATTTTCCCAACAGCC  1066

seq1  ATATTGACACTCATTAATAATTTACAAGGAGAAAGATAGAGTCCTAAGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGACACTCATTAATAATTTACAAGGAGAAAGATAGAGTCCTAAGAA  1116

seq1  GAATTC  1154
      ||||||
seq2  GAATTC  1122

seq1: chr4_18380597_18381690
seq2: B6Ng01-161F18.g_68_1157

seq1  GAATTCCAGACAAAAATCCAATACTTGTAGTTCATATAACATTATTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAAAAATCCAATACTTGTAGTTCATATAACATTATTTTGT  50

seq1  TTGTTTTTGCCAAAATTTAGTGGACAGTTAAGTGAGGGTTTGGGATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGCCAAAATTTAGTGGACAGTTAAGTGAGGGTTTGGGATCTGA  100

seq1  ACCAAATATTAAAATGATAAAACTATTTATTTATCTGTCAAAACCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATATTAAAATGATAAAACTATTTATTTATCTGTCAAAACCAGTAG  150

seq1  GTGCTTTTACATGAAGGAGGTTAAAACAAAAAGTTTTTTTTTTTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTACATGAAGGAGGTTAAAACAAAAAGTTTTTTTTTTTTTTTAT  200

seq1  AAAACCTTCCCACTTTCCACAATGTTCAGGGAACATACTTAAAGTGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCCCACTTTCCACAATGTTCAGGGAACATACTTAAAGTGCAAC  250

seq1  TAAAAGGAATAGAGGAGCCAGAGGTTTGGAGGAATTCTGGGAGTTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAATAGAGGAGCCAGAGGTTTGGAGGAATTCTGGGAGTTGTCCT  300

seq1  TTAGTTATTGGCATGCTTGTCATACACATGAACTCATAGTGACTGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATTGGCATGCTTGTCATACACATGAACTCATAGTGACTGTGGAT  350

seq1  ACCTATCCAAGGCTTGCACAAAATCAAGCCAGTTACATTTCCAGCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCCAAGGCTTGCACAAAATCAAGCCAGTTACATTTCCAGCATGGA  400

seq1  TAGAGAAGGAGTGATGAGAGCCCTGAGTCTCAGATGAGCTAATGGCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGGAGTGATGAGAGCCCTGAGTCTCAGATGAGCTAATGGCAGCT  450

seq1  GATGGCTGCTGGGTAGGAGATTGCTACTTTCCTTTGGGCAGAGGTAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGCTGGGTAGGAGATTGCTACTTTCCTTTGGGCAGAGGTAATCA  500

seq1  GTGATAGGTTATTCATCCTTCAATGGAAGGCCCCAAAGCAGTACTATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGTTATTCATCCTTCAATGGAAGGCCCCAAAGCAGTACTATCTA  550

seq1  AATTGAGTGGATTATGTAAAAGAAGAGATAGAGAATATAAATTTGGGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTGGATTATGTAAAAGAAGAGATAGAGAATATAAATTTGGGGAT  600

seq1  TTGATGCAGGGCAGCAGAAGATGAATATGATGTATGAAATTTTTGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCAGGGCAGCAGAAGATGAATATGATGTATGAAATTTTTGAAAAT  650

seq1  TAAGTTTAAAATATAAAAATAAAACAAGCACTGACTTAGCTTGTTTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAAAATATAAAAATAAAACAAGCACTGACTTAGCTTGTTTTAAT  700

seq1  GCAATATACAGAACTGATATAATTCAAATTATTTGATTGCCTAATTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATACAGAACTGATATAATTCAAATTATTTGATTGCCTAATTTATG  750

seq1  GCACAATTTTGACTATAAATTATGGATTAAATATATTTATTGCATATTTT  800
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  GCACAATTTTGACTATAAA-TATGGAATAAATATATTTATTGCATATTTT  799

seq1  AATTACAGTTGAATTATTAATTTACAGCTGCATATTCTTATTAAAGAACA  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATTACAGTTGAATTATTAATCTACAGCTGCATATTCTTATTAAAGAACA  849

seq1  AATTTTGAGTTTAAAATTTTAAGTAGCAGAACGAGTGTCATGACTTGAAG  900
      ||||| |||||||||  ||| ||||||  |||||||| |  |||||||||
seq2  AATTTGGAGTTTAAA--TTTTAGTAGCCAAACGAGTGCCTAGACTTGAAG  897

seq1  ATCATATTGTATTGATATTTTCA-GCTCCTATGTTAGTTAAACTTG-CTA  948
      ||||||| ||||||||||||||| |||||||||||||||||||||| | |
seq2  ATCATATCGTATTGATATTTTCACGCTCCTATGTTAGTTAAACTTGCCAA  947

seq1  CT-ATGGACATTTCTTTTC--TCAAATATATATTTTGTTGGTAACAATAT  995
      || | ||||||||| ||||   ||||||||||||||| |||  |||||||
seq2  CTAAGGGACATTTCCTTTCCTCCAAATATATATTTTGGTGGAGACAATAT  997

seq1  TAAGGCCTTCCCTGTTCACCTTATTGGAATATAAAATA-CACATTTTCAT  1044
      ||||| ||| |||||  |||||||| ||| || ||||| |||| ||||||
seq2  TAAGG-CTTTCCTGTCTACCTTATTTGAA-ATTAAATATCACA-TTTCAT  1044

seq1  AAAGTGAAAATCTGTTAAGTAAATATTAGCAGCATATAGCCTTTATCATC  1094
      ||   | ||||||  ||||  |||||    | | ||   |||||||||||
seq2  AA---GGAAATCTTGTAAGGTAATATACCGATCTTA-GCCCTTTATCATC  1090