BAC Information

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BAC

Clone NameB6Ng01-161N05
Chromosome4 (Build37)
Map Location 21,896,805 - 22,044,983
singlet/doubletdoublet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik
Downstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161N05.bB6Ng01-161N05.g
ACCDH954831DH954832
length9781,179
definitionDH954831|Mus musculus domesticus DNA, BAC clone: B6Ng01-161N05, 5' end.DH954832|Mus musculus domesticus DNA, BAC clone: B6Ng01-161N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,896,805 - 21,897,792)(22,043,816 - 22,044,983)
sequence
gaattcaattcctaaatgaggatactttaaaaacaacacaaaacaaaaca
aaagccatagaagataacgtcatacacaatccactttaaaaatctctttt
gggtcaggcatggcagcaaacacgtttgatcccacggctggggaggcaga
ggcaggcagagctctgtggacctgaggccagcctgacctacatagggagc
ttctggtccaccagggctacacagtgccctgcaaaaccaaagcaaagcaa
agcaaaacaacagaaacaacattagcatccatactttaggtgtttttatt
ttcagtttcaacatagaaggagaagcttagttacttttctgaaataaaac
actacaaccacggcaacttgcaaaagagaacatttaagtgggcatacgat
ttgtatgaaggttgatccataatggtggaacaaaggcatggtggagtaat
ggcagagagctcacatattaaaacagaagtagtaggcagagaggtacatg
ggaagccgttgaaacctcaaagcccttccccctcctctaacaaggccatg
tctcctaatccttcccaaacagttccatcaattgagcctatggaagtcat
tcagactgccacagtgtgctcctccaagatggcgctccccatctgtattc
ctttggattgactggtttgggtaaaatttgaggaggaaataattttaggt
aggtgatgacctgatacatcctaatacatttgtgagtgggtttttttttt
ttttttttttcggtccttgctcactcagtaactgggaggagaatttgtct
gtctattcacctctgtatctcaagccccagagctctgcctcttatgaatc
aaaatgacatcagcaagagctgcctttcatgcatcgctcacaaggcaaga
agtgcagtacataattcatgcctccctatggaacccattcaaaatgtgtg
ttattacgaatgtattacataacctaaa
gaattcattgactgcacttaatggccctttaaaaacaagagcacatgttc
attcatgatcatttagtctgtatattttgatacattctcaccagtacatg
cattctccagacgaggagctgaacgaatgacaaaacagaacagcacagca
cacagtgggtctcgttcaggtcgggcacctgctctacttccctgagggct
aaaaagcaagcaagtaaatgatagagtgatggggaagaaaaagaaacaag
caaatgggtaatggagagaaggaagagaagcggaactggagacagaaagg
tggctgctgttcttgcgccttgggaaatggtgaattacactgtccatgaa
tagagccagtaacaaaagcaaggtgccaatgggcctaggtctcttccttt
gaagaaacctgaccattgtatgtgtggctctgactcccagagttgcatcc
taggacaggaagaagagcagtacctgcagagtggagacccacaactgact
ccacatgtcctgctgtgtatacttctgttggcctatgtgctaatccccct
ggttggctgtggtagaggtttagccatgagactagatgactccatattga
attatagtttttctgttctgtgtttaactttggccagggatttatttcct
ttggaatatttggattggacatacatttaaccatcctatccttcaaaaga
agatatcactgtttatgtgtcactttgagcaccactgtggtaaacaagta
tgtgacgggagagaaagatgggagaaagagggaatcaaaacgatttgtgc
cctgtgcagagaggtggaaccgggagactcgagggtggagagtaacagcc
tgctgttgagtagcctgtgctgccacctgagaccctgggtgaagtcccgg
ctcattcttccactgagtcccattgtctgggttccttggttctgcaacat
caggggtctgtgtcaatattggcttttgaccttggtacaccaaaggccat
gaggaaaggcttgtctgaacgctgcctgattcatgtaaatttccaaaaga
tgtgacaaaactgttctcaccctttcttctgggcaaggtggagaaactaa
agagctgtgtcctcggcctcacccctcaacatgccctgtgatggtgtggg
ctaggaagaatagacaccctctctttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21896805_21897792
seq2: B6Ng01-161N05.b_47_1024

seq1  GAATTCAATTCCTAAATGAGGATACTTTAAAAACAACACAAAACAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCTAAATGAGGATACTTTAAAAACAACACAAAACAAAACA  50

seq1  AAAGCCATAGAAGATAACGTCATACACAATCCACTTTAAAAATCTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATAGAAGATAACGTCATACACAATCCACTTTAAAAATCTCTTTT  100

seq1  GGGTCAGGCATGGCAGCAAACACGTTTGATCCCACGGCTGGGGAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGCATGGCAGCAAACACGTTTGATCCCACGGCTGGGGAGGCAGA  150

seq1  GGCAGGCAGAGCTCTGTGGACCTGAGGCCAGCCTGACCTACATAGGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCAGAGCTCTGTGGACCTGAGGCCAGCCTGACCTACATAGGGAGC  200

seq1  TTCTGGTCCACCAGGGCTACACAGTGCCCTGCAAAACCAAAGCAAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCCACCAGGGCTACACAGTGCCCTGCAAAACCAAAGCAAAGCAA  250

seq1  AGCAAAACAACAGAAACAACATTAGCATCCATACTTTAGGTGTTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACAACAGAAACAACATTAGCATCCATACTTTAGGTGTTTTTATT  300

seq1  TTCAGTTTCAACATAGAAGGAGAAGCTTAGTTACTTTTCTGAAATAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCAACATAGAAGGAGAAGCTTAGTTACTTTTCTGAAATAAAAC  350

seq1  ACTACAACCACGGCAACTTGCAAAAGAGAACATTTAAGTGGGCATACGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAACCACGGCAACTTGCAAAAGAGAACATTTAAGTGGGCATACGAT  400

seq1  TTGTATGAAGGTTGATCCATAATGGTGGAACAAAGGCATGGTGGAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAAGGTTGATCCATAATGGTGGAACAAAGGCATGGTGGAGTAAT  450

seq1  GGCAGAGAGCTCACATATTAAAACAGAAGTAGTAGGCAGAGAGGTACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGCTCACATATTAAAACAGAAGTAGTAGGCAGAGAGGTACATG  500

seq1  GGAAGCCGTTGAAACCTCAAAGCCCTTCCCCCTCCTCTAACAAGGCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCGTTGAAACCTCAAAGCCCTTCCCCCTCCTCTAACAAGGCCATG  550

seq1  TCTCCTAATCCTTCCCAAACAGTTCCATCAATTGAGCCTATGGAAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAATCCTTCCCAAACAGTTCCATCAATTGAGCCTATGGAAGTCAT  600

seq1  TCAGACTGCCACAGTGTGCTCCTCCAAGATGGCGCTCCCCATCTGTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGCCACAGTGTGCTCCTCCAAGATGGCGCTCCCCATCTGTATTC  650

seq1  CTTTGGATTGACTGGTTTGGGTAAAATTTGAGGAGGAAATAATTTTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATTGACTGGTTTGGGTAAAATTTGAGGAGGAAATAATTTTAGGT  700

seq1  AGGTGATGACCTGATACATCCTAATACATTTGTGAGTGGGTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  AGGTGATGACCTGATACATCCTAATACATTTGTGAGTGGG---TTTTTTT  747

seq1  TTTTTTTTTTTTTCGGTCCTTGCTCAACTCAGTAACT-GGAGGAGAATTT  799
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TTTTTTTTTTTTTCGGTCCTTGCTC-ACTCAGTAACTGGGAGGAGAATTT  796

seq1  GTCTGTTCTATTCACCTCTGTATCTCAAGCCCCCAGAGCTCTGCCTCATA  849
      ||||| ||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GTCTG-TCTATTCACCTCTGTATCTCAAG-CCCCAGAGCTCTGCCTCTTA  844

seq1  TAGAATCAAAATGACATCAGCAAGAGCTGCCATTCATGCATCGCTCACCA  899
      | ||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  T-GAATCAAAATGACATCAGCAAGAGCTGCCTTTCATGCATCGCTCA-CA  892

seq1  AGGCAAGAAGTGCAGTACATAATTCATGCCTTCCTATGGAACTCAATTCA  949
      ||||||||||||||||||||||||||||||| |||||||||| | |||||
seq2  AGGCAAGAAGTGCAGTACATAATTCATGCCTCCCTATGGAAC-CCATTCA  941

seq1  AAATAGTGTGTCTATTACGAATGTATTACATAAGCTAAA  988
      |||| |||||| ||||||||||||||||||||| |||||
seq2  AAAT-GTGTGT-TATTACGAATGTATTACATAACCTAAA  978

seq1: chr4_22043816_22044983
seq2: B6Ng01-161N05.g_68_1246 (reverse)

seq1  GTGAAAGA---GGGGTCT-TTCTCCTGAGCCCACACTACTGCAGGGC-TA  45
      ||||||||   || |||| |||| |  ||||||||| |   |||||| | 
seq2  GTGAAAGAGAGGGTGTCTATTCTTCCTAGCCCACACCATCACAGGGCATG  50

seq1  TTGAGGGGTGAGGCCAGGGAC-CAGCTCTTTCGTTCTCCCACATTGCCCA  94
      |||||||||||||||  |||| ||||||||| |||   |||| |||||||
seq2  TTGAGGGGTGAGGCCGAGGACACAGCTCTTTAGTTTCTCCACCTTGCCCA  100

seq1  GAAG-AAGGGTGGGAACAGTTCTG-CTCAGTCTTTGGACATCTACATGAC  142
      |||| ||||||| |||||||| || | ||   |||||| || ||||||| 
seq2  GAAGAAAGGGTGAGAACAGTTTTGTCACATCTTTTGGAAATTTACATGAA  150

seq1  TCAGGCAGCAGTCCAGACCAGGCCTTTCCTCATGGCCTTTGGTGGTAACA  192
      ||||||||| || |||| || |||||||||||||||||||||| ||| ||
seq2  TCAGGCAGC-GTTCAGA-CAAGCCTTTCCTCATGGCCTTTGGT-GTACCA  197

seq1  AGGGTCAAAGCC-ATATTGACACAGACCCCTGCTGTTGCAGAACC-ATGA  240
      |||   |||||| ||||||||||||||||||| |||||||||||| | ||
seq2  AGGTCAAAAGCCAATATTGACACAGACCCCTGATGTTGCAGAACCAAGGA  247

seq1  ACCCAGAC-ATGGGACTCAGTGGTAGAATGAGCCGGGACTTCA-CCAGGG  288
      |||||||| |||||||||||||| ||||||||||||||||||| ||||||
seq2  ACCCAGACAATGGGACTCAGTGGAAGAATGAGCCGGGACTTCACCCAGGG  297

seq1  TCTCAGGTGGCAGCACAGGCTACTC-ACAGCAGGCTGTTCCTCTCCACCC  337
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TCTCAGGTGGCAGCACAGGCTACTCAACAGCAGGCTGTTACTCTCCACCC  347

seq1  TCGAGTCT-CCGGTTCCACCTCTCTGCACAGGGCACAAATCGTTTTGATT  386
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTCTCCCGGTTCCACCTCTCTGCACAGGGCACAAATCGTTTTGATT  397

seq1  CCCTCTTTCTCCCATCTTTCTCTCCCGTCACATACTTGTTTACCACAGTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTCCCATCTTTCTCTCCCGTCACATACTTGTTTACCACAGTG  447

seq1  GTGCTCAAAGTGACACATAAACAGTGATATCTTCTTTTGAAGGATAGGAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAAAGTGACACATAAACAGTGATATCTTCTTTTGAAGGATAGGAT  497

seq1  GGTTAAATGTATGTCCAATCCAAATATTCCAAAGGAAATAAATCCCTGGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATGTATGTCCAATCCAAATATTCCAAAGGAAATAAATCCCTGGC  547

seq1  CAAAGTTAAACACAGAACAGAAAAACTATAATTCAATATGGAGTCATCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAAACACAGAACAGAAAAACTATAATTCAATATGGAGTCATCTA  597

seq1  GTCTCATGGCTAAACCTCTACCACAGCCAACCAGGGGGATTAGCACATAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGCTAAACCTCTACCACAGCCAACCAGGGGGATTAGCACATAG  647

seq1  GCCAACAGAAGTATACACAGCAGGACATGTGGAGTCAGTTGTGGGTCTCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGAAGTATACACAGCAGGACATGTGGAGTCAGTTGTGGGTCTCC  697

seq1  ACTCTGCAGGTACTGCTCTTCTTCCTGTCCTAGGATGCAACTCTGGGAGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGGTACTGCTCTTCTTCCTGTCCTAGGATGCAACTCTGGGAGT  747

seq1  CAGAGCCACACATACAATGGTCAGGTTTCTTCAAAGGAAGAGACCTAGGC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCACACATACAATGGTCAGGTTTCTTCAAAGGAAGAGACCTAGGC  797

seq1  CCATTGGCACCTTGCTTTTGTTACTGGCTCTATTCATGGACAGTGTAATT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGCACCTTGCTTTTGTTACTGGCTCTATTCATGGACAGTGTAATT  847

seq1  CACCATTTCCCAAGGCGCAAGAACAGCAGCCACCTTTCTGTCTCCAGTTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCCCAAGGCGCAAGAACAGCAGCCACCTTTCTGTCTCCAGTTC  897

seq1  CGCTTCTCTTCCTTCTCTCCATTACCCATTTGCTTGTTTCTTTTTCTTCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCTCTTCCTTCTCTCCATTACCCATTTGCTTGTTTCTTTTTCTTCC  947

seq1  CCATCACTCTATCATTTACTTGCTTGCTTTTTAGCCCTCAGGGAAGTAGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTCTATCATTTACTTGCTTGCTTTTTAGCCCTCAGGGAAGTAGA  997

seq1  GCAGGTGCCCGACCTGAACGAGACCCACTGTGTGCTGTGCTGTTCTGTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGCCCGACCTGAACGAGACCCACTGTGTGCTGTGCTGTTCTGTTT  1047

seq1  TGTCATTCGTTCAGCTCCTCGTCTGGAGAATGCATGTACTGGTGAGAATG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCGTTCAGCTCCTCGTCTGGAGAATGCATGTACTGGTGAGAATG  1097

seq1  TATCAAAATATACAGACTAAATGATCATGAATGAACATGTGCTCTTGTTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAATATACAGACTAAATGATCATGAATGAACATGTGCTCTTGTTT  1147

seq1  TTAAAGGGCCATTAAGTGCAGTCAATGAATTC  1168
      ||||||||||||||||||||||||||||||||
seq2  TTAAAGGGCCATTAAGTGCAGTCAATGAATTC  1179