BAC Information

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BAC

Clone NameB6Ng01-162P08
Chromosome4 (Build37)
Map Location 28,736,552 - 28,892,243
singlet/doubletdoublet
Overlap geneEpha7
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneLOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P08.bB6Ng01-162P08.g
ACCDH955664DH955665
length1,0881,115
definitionDH955664|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P08, 5' end.DH955665|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,891,152 - 28,892,243)(28,736,552 - 28,737,689)
sequence
gaattccttacttttgtatttggactgcattcaacaagaaagaatacaaa
atataggtcaactatgttcctaaatttcttactgtcacaagactgaagct
cttgatgtgctcggattgggttagccaaagctggagagcttcgcttccag
tcttgctttcaccagcatcttcagacgaagctcagccttttatcatatac
acataaacctaaaatttgacatctctcttttttttttattaaattctgcc
tagtaaatcactctataaacaatctgttaaaagtgccttatagtatttat
ggatcattattgctttctttttttttttttttttcattgaaaagttagta
tgttgtctgatttttacaaagaaaaaaaaatcctgttaaaaaatatcaga
gctcttggcaacttgcaattttgaactacctgccaatcagcaaacaatat
gaaaacatcactggtttaacaaaatgacacagccaggataccaaagccat
gaaggacaaagtcccatcctcgactatgtgcgtagttttgctttccttta
agtttgagagtcttcaaaggtacccagtgtagtaacgtgtcataaattta
acactaaaaaggtccaaagctacaaataactttctaaaacaaagtcctta
agcagaataaacacagatggttctggaaaagaatagtctgaaatcacata
ttttaaggaaaatatttcattgattttaacaataagatcatgatttttat
ttgacaaatatattctttcttaaattctttatgtacatttttaaaaagtc
tataagataaaaaggaggttcgagagctcaaggtgttgggatgtttttca
ggtagtactttgtttattgtctctgctgtgttcctggccaccagtggtgg
atcctaaattccctttttgtatattctggtggcacttagagttcaagtct
ggaggtgcttctaaaatcttctctttcttgtaagaaggacccagtatatt
caactgtcttctagcagcattctatgcgtatactgaaggccagactgttc
tcctgcagtctaggcctcatctgagggagcgatgtgtc
gaattcaatggttgcagttgaaaattgtgattgtaatctcttgagttttg
ccacttatctcatacccacccaagtgaataccgtgtcgtaaagatgcaaa
gtatactcttgattttttgctagctaagcctgatgctgagagtacaggtg
aaatttatttttgtgtgttttatattttcattagactgcatgtaaatgtt
ttgtatacagtacataaatcatgctaatgtaaatatataaatgattttct
taggcggtggaaaaatgtttacattttgattgaaatggaaaatgtagttt
tcagtatctattaacccagatacaatgtttccttttctttatcaattctt
ctacagggtagggttttcagttcatttaagtagtcgctcttctgtgatga
acttgcatttggacagtaaatgcaaaagaaatggttccagaggcagctcg
gtgactcactgttgtgtggtcagtatttagctcgtcggccttggcatggt
aacattccagagggccaggtgttcccacacatctacagatgcagttccta
gatatgcagagataaacccattgagccacttttgctattagaaaatgcat
aagacctaccccctgaaaatactataatatattatagtatttaagaagag
aaattctaagtatttctcatcttaaaaccctaagctattttagaggcata
aatactaaggtaaatatcagtattgtggaaagttaaaagaaaataacagt
tgtctctctctctcctagaatacatgacttaaatggtcattaatttttat
gtatgtataattatgtgtagacaattcagtaaattattagagaaatgatg
caaactgaataacatttcacagtgtttttgtatttgaagacaggcatttt
ttttaaatctttctactttatcatagatgttttaaaagtggattcacaaa
aataagttttatattcattctgtgtatttagaactgagaagactatttta
gtaacattcagatgagtaataaagacatgagtaaaaaaagtttttatttc
tgggtttttttttgtcaacatgtagtttataaaatcatttgttgttgccg
aaaaagaactgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28891152_28892243
seq2: B6Ng01-162P08.b_46_1133 (reverse)

seq1  GACACATCGGCCTCCCTCAGATGAGGCTTAAGACTGCAGGAGAACAGTTC  50
      |||||||||  |||||||||||||||| | ||||||||||||||||| ||
seq2  GACACATCG--CTCCCTCAGATGAGGCCT-AGACTGCAGGAGAACAG-TC  46

seq1  TGGCCTTCAGTATACGCATAGAATGCTGCTAGAAGACAGTTG-ATATACT  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGCCTTCAGTATACGCATAGAATGCTGCTAGAAGACAGTTGAATATACT  96

seq1  GGGTCCTTCCTACAAGAAAGAGAAGATTTTAGAAGCACCTCCAGACTTGA  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTTCTTACAAGAAAGAGAAGATTTTAGAAGCACCTCCAGACTTGA  146

seq1  ACTCCTAAGTGCCACCAGAATATACAAAAAGGGAATTTAGGATCCACCAC  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACT-CTAAGTGCCACCAGAATATACAAAAAGGGAATTTAGGATCCACCAC  195

seq1  TGGTGGCCAGGAACACAGCAGAGACAATAAACAAAGTACTACCTGAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCAGGAACACAGCAGAGACAATAAACAAAGTACTACCTGAAAAA  245

seq1  CATCCCAACACCTTGAGCTCTCGAACCTCCTTTTTATCTTATAGACTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAACACCTTGAGCTCTCGAACCTCCTTTTTATCTTATAGACTTTT  295

seq1  TAAAAATGTACATAAAGAATTTAAGAAAGAATATATTTGTCAAATAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTACATAAAGAATTTAAGAAAGAATATATTTGTCAAATAAAAA  345

seq1  TCATGATCTTATTGTTAAAATCAATGAAATATTTTCCTTAAAATATGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCTTATTGTTAAAATCAATGAAATATTTTCCTTAAAATATGTGA  395

seq1  TTTCAGACTATTCTTTTCCAGAACCATCTGTGTTTATTCTGCTTAAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTATTCTTTTCCAGAACCATCTGTGTTTATTCTGCTTAAGGAC  445

seq1  TTTGTTTTAGAAAGTTATTTGTAGCTTTGGACCTTTTTAGTGTTAAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAGAAAGTTATTTGTAGCTTTGGACCTTTTTAGTGTTAAATTT  495

seq1  ATGACACGTTACTACACTGGGTACCTTTGAAGACTCTCAAACTTAAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACGTTACTACACTGGGTACCTTTGAAGACTCTCAAACTTAAAGGA  545

seq1  AAGCAAAACTACGCACATAGTCGAGGATGGGACTTTGTCCTTCATGGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACTACGCACATAGTCGAGGATGGGACTTTGTCCTTCATGGCTT  595

seq1  TGGTATCCTGGCTGTGTCATTTTGTTAAACCAGTGATGTTTTCATATTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCCTGGCTGTGTCATTTTGTTAAACCAGTGATGTTTTCATATTGT  645

seq1  TTGCTGATTGGCAGGTAGTTCAAAATTGCAAGTTGCCAAGAGCTCTGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATTGGCAGGTAGTTCAAAATTGCAAGTTGCCAAGAGCTCTGATA  695

seq1  TTTTTTAACAGGATTTTTTTTTCTTTGTAAAAATCAGACAACATACTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAACAGGATTTTTTTTTCTTTGTAAAAATCAGACAACATACTAAC  745

seq1  TTTTCAATGAAAAAAAAAAAAAAAAAGAAAGCAATAATGATCCATAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGAAAAAAAAAAAAAAAAAGAAAGCAATAATGATCCATAAATA  795

seq1  CTATAAGGCACTTTTAACAGATTGTTTATAGAGTGATTTACTAGGCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGGCACTTTTAACAGATTGTTTATAGAGTGATTTACTAGGCAGAA  845

seq1  TTTAATAAAAAAAAAAGAGAGATGTCAAATTTTAGGTTTATGTGTATATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAAAAAAAAGAGAGATGTCAAATTTTAGGTTTATGTGTATATG  895

seq1  ATAAAAGGCTGAGCTTCGTCTGAAGATGCTGGTGAAAGCAAGACTGGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGCTGAGCTTCGTCTGAAGATGCTGGTGAAAGCAAGACTGGAAG  945

seq1  CGAAGCTCTCCAGCTTTGGCTAACCCAATCCGAGCACATCAAGAGCTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCTCTCCAGCTTTGGCTAACCCAATCCGAGCACATCAAGAGCTTCA  995

seq1  GTCTTGTGACAGTAAGAAATTTAGGAACATAGTTGACCTATATTTTGTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGACAGTAAGAAATTTAGGAACATAGTTGACCTATATTTTGTAT  1045

seq1  TCTTTCTTGTTGAATGCAGTCCAAATACAAAAGTAAGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTGTTGAATGCAGTCCAAATACAAAAGTAAGGAATTC  1088

seq1: chr4_28736552_28737689
seq2: B6Ng01-162P08.g_68_1182

seq1  GAATTCAATGGTTGCAGTTGAAAATTGTGATTGTAATCTCTTGAGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTTGCAGTTGAAAATTGTGATTGTAATCTCTTGAGTTTTG  50

seq1  CCACTTATCTCATACCCACCCAAGTGAATACCGTGTCGTAAAGATGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATCTCATACCCACCCAAGTGAATACCGTGTCGTAAAGATGCAAA  100

seq1  GTATACTCTTGATTTTTTGCTAGCTAAGCCTGATGCTGAGAGTACAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTCTTGATTTTTTGCTAGCTAAGCCTGATGCTGAGAGTACAGGTG  150

seq1  AAATTTATTTTTGTGTGTTTTATATTTTCATTAGACTGCATGTAAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTTTGTGTGTTTTATATTTTCATTAGACTGCATGTAAATGTT  200

seq1  TTGTATACAGTACATAAATCATGCTAATGTAAATATATAAATGATTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACAGTACATAAATCATGCTAATGTAAATATATAAATGATTTTCT  250

seq1  TAGGCGGTGGAAAAATGTTTACATTTTGATTGAAATGGAAAATGTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGGTGGAAAAATGTTTACATTTTGATTGAAATGGAAAATGTAGTTT  300

seq1  TCAGTATCTATTAACCCAGATACAATGTTTCCTTTTCTTTATCAATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCTATTAACCCAGATACAATGTTTCCTTTTCTTTATCAATTCTT  350

seq1  CTACAGGGTAGGGTTTTCAGTTCATTTAAGTAGTCGCTCTTCTGTGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGGTAGGGTTTTCAGTTCATTTAAGTAGTCGCTCTTCTGTGATGA  400

seq1  ACTTGCATTTGGACAGTAAATGCAAAAGAAATGGTTCCAGAGGCAGCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATTTGGACAGTAAATGCAAAAGAAATGGTTCCAGAGGCAGCTCG  450

seq1  GTGACTCACTGTTGTGTGGTCAGTATTTAGCTCGTCGGCCTTGGCATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCACTGTTGTGTGGTCAGTATTTAGCTCGTCGGCCTTGGCATGGT  500

seq1  AACATTCCAGAGGGCCAGGTGTTCCCACACATCTACAGATGCAGTTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCAGAGGGCCAGGTGTTCCCACACATCTACAGATGCAGTTCCTA  550

seq1  GATATGCAGAGATAAACCCATTGAGCCACTTTTGCTATTAGAAAATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGAGATAAACCCATTGAGCCACTTTTGCTATTAGAAAATGCAT  600

seq1  AAGACCTACCCCCTGAAAATACTATAATATATTATAGTATTTAAGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTACCCCCTGAAAATACTATAATATATTATAGTATTTAAGAAGAG  650

seq1  AAATTCTAAGTATTTCTCATCTTAAAACCCTAAGCTATTTTAGAGGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAAGTATTTCTCATCTTAAAACCCTAAGCTATTTTAGAGGCATA  700

seq1  AATACTAAGGTAAATATCAGTATTGTGGAAAGTTAAAAGAAAATAACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAAGGTAAATATCAGTATTGTGGAAAGTTAAAAGAAAATAACAGT  750

seq1  TGTCTCTCTCTCTCCTAGAATACATGACTTAAATGGTCATTAATTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCTCCTAGAATACATGACTTAAATGGTCATTAATTTTTAT  800

seq1  GTATGTATAATTATGTGTAGACAATTCAGTAAATTATTAGAGAAATGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATAATTATGTGTAGACAATTCAGTAAATTATTAGAGAAATGATG  850

seq1  CAAACTGAATAACATTTCACAGTGTTTTTGTATTTGAAGACAGGCATTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAACTGAATAACATTTCACAGTGTTTTTGTATTTGAAGACAGGCA-TTT  899

seq1  TTTTTAAATCTTTCTACTTTATCATAGATGTTTTAAAAAGTGGATTCACA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTTAAATCTTTCTACTTTATCATAGATGTTTT-AAAAGTGGATTCACA  948

seq1  AAAATAAGGTTTTATTATTCATTCCTGTGTATTTAGAACTTGAGATAGAC  1000
      ||||||| |||||| |||||||| ||||||||||||||| ||||| ||||
seq2  AAAATAA-GTTTTA-TATTCATT-CTGTGTATTTAGAAC-TGAGA-AGAC  993

seq1  TATTTTTAGTAACAATTCAGAATGAGTAAATAAAGACAATGAGTAAAAAA  1050
      || |||||||||| |||||| |||||| ||||||||| |||||| |||||
seq2  TA-TTTTAGTAAC-ATTCAG-ATGAGT-AATAAAGAC-ATGAGT-AAAAA  1037

seq1  AAGTTTTTTTAATTTCTGGGTTTTTTTTTTGGTCAAACATGTTAGTTTTA  1100
      ||||||||   ||||||||||||||||||  ||| |||||| ||||||  
seq2  AAGTTTTT---ATTTCTGGGTTTTTTTTT--GTC-AACATG-TAGTTTAT  1080

seq1  TAAATCATTTGTTGTTGCTCAAAAAAAGAACATGTTTT  1138
       ||||||||||||||||  |  ||||||||| ||||||
seq2  AAAATCATTTGTTGTTG--CCGAAAAAGAAC-TGTTTT  1115