BAC Information

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BAC

Clone NameB6Ng01-164F11
Chromosome4 (Build37)
Map Location 66,759,895 - 66,905,917
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164F11.bB6Ng01-164F11.g
ACCDH956693DH956694
length1,1101,134
definitionDH956693|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F11, 5' end.DH956694|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,759,895 - 66,761,001)(66,904,772 - 66,905,917)
sequence
gaattctattacataaatcattattaatagtaatttgaaacctttcgtct
tgaaaaagcttcaaagtattggaaatcagatcccttcatttatgtcaact
attcctgggctctacagcacttctcagattttttttgttgattgcctttg
cattttgagtgagggataagaagagcaagaaatgatttgctttgatcaga
gagggggcatttcattccagatttaggactttgcccagtgaggccaacta
tgcatattcccagcatccagcagctcggtctgtctagcccaaagatgagc
tattgcccaggtcccctatattcaactctcaagctgtccaatctcttata
ccaaagcttgtctgggaccacagcagaaggtaatgggaggttgtttaagg
ttggagtgagactgggatagaaacagatggtgttttggcagagtgattaa
aacattagatatctgttttaatgaattgcccatccggtgtataaaatact
gcaatagtgcgacccagtctcctcagccagtaattgtgatcttatttaca
gaatatgttttctcctggtggaaccatgtgttttatgctgtgactccaaa
tgccaaaacttttggaattttaagagaggagaaaaaataccaaggtaaat
cagaaaaatagattatatactaaaaatctcccattaaggcatcgtccaat
caaagaagtccaatattcagtccaattttctgtgtgatcttttggctagt
cacctaacgtctctggactgacttttctcactttggaaaacaaagttgac
aatctggtcgcctagttaccacatgtttaagttaacacagaggagctgaa
gttcagatcataaattcgcttttggaagaaagatactatgggtaactcat
taaaatgtgttgcaatatgaccagcagggaaggaaagttatccaatgtgc
aactattgaccttcaagctcagaataaattttttatgcatttctgagcta
atacttccaccttcacataagaaactattacaagtttaatgattatgttc
ctgtatttagtggggaggacaagaaagaacccatggacatccctgccctc
caagctaatt
gaattcactgtcagtcttttcaaaaacaagagaagaggacatcggaacac
ataactgatggttgtgagccaccatgtggtttctgagaattgaactcagg
gactctggaagaacagttagtgcgtgtaactactgaaccatctctccagc
cctagctgatacatttttaaagctaagcaaccatattctttatcctagag
tggaacactttacccaatcctagagcacagcctttggcattgtaaggatc
ttcacttgactttcctgctgcttcctattgggttgctctgtcccagagca
atgaagagggctgaaaaccatggatcagttatagataatcatgtttccat
ttagcacaggcaagtgatttctcattgtccctgtcaaataaaaccagccc
ttagcaccagctatttccttcagaaaacaccgctctatttctttgctccc
tgagctcacttagattaacattaatgatcttttctcacagatgggtccca
gagcattagaccctgccaagcctttttctattcaaaatgattcttgtctt
ggcctcttgcttgcattgtggccccatctcaatttggaagcatcagccgt
tagcagctgttttcacacttagagttggaatgaagatcctgaaagacttg
gagagaaggcagagcttggaaggaggggaagtaagaatggaaaagaaagt
ttcataccgcataatagaagctgaatgttggagacacatcacaaaggaaa
agggaaaactgccacaaaacttgttagttgacattgagtcttgaaatcac
tgtttcactttctaagtactgtataccagaagtcaaaaataatttttatg
acatttttaaattacttgcaggtttgagccacaagttcattcatgtacta
aaaggctacccttaaaccaaggagagcagtaatatctatgtgacaaagat
aacagtaaatatctgataggtatgtatcttcacacaaaatttatgcatgt
ccgggattaaacacaggcatattcatactgaacaggtgttatcacaactg
aaatccatcccagtcctctactattaaagaccaccaaataccaaatgcag
atctgttgtaatataaagtccaagttcatggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66759895_66761001
seq2: B6Ng01-164F11.b_45_1154

seq1  GAATTCTATTACATAAATCATTATTAATAGTAATTTGAAACCTTTCGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTACATAAATCATTATTAATAGTAATTTGAAACCTTTCGTCT  50

seq1  TGAAAAAGCTTCAAAGTATTGGAAATCAGATCCCTTCATTTATGTCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGCTTCAAAGTATTGGAAATCAGATCCCTTCATTTATGTCAACT  100

seq1  ATTCCTGGGCTCTACAGCACTTCTCAGATTTTTTTTGTTGATTGCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGGCTCTACAGCACTTCTCAGATTTTTTTTGTTGATTGCCTTTG  150

seq1  CATTTTGAGTGAGGGATAAGAAGAGCAAGAAATGATTTGCTTTGATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGTGAGGGATAAGAAGAGCAAGAAATGATTTGCTTTGATCAGA  200

seq1  GAGGGGGCATTTCATTCCAGATTTAGGACTTTGCCCAGTGAGGCCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCATTTCATTCCAGATTTAGGACTTTGCCCAGTGAGGCCAACTA  250

seq1  TGCATATTCCCAGCATCCAGCAGCTCGGTCTGTCTAGCCCAAAGATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTCCCAGCATCCAGCAGCTCGGTCTGTCTAGCCCAAAGATGAGC  300

seq1  TATTGCCCAGGTCCCCTATATTCAACTCTCAAGCTGTCCAATCTCTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCCAGGTCCCCTATATTCAACTCTCAAGCTGTCCAATCTCTTATA  350

seq1  CCAAAGCTTGTCTGGGACCACAGCAGAAGGTAATGGGAGGTTGTTTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTTGTCTGGGACCACAGCAGAAGGTAATGGGAGGTTGTTTAAGG  400

seq1  TTGGAGTGAGACTGGGATAGAAACAGATGGTGTTTTGGCAGAGTGATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGAGACTGGGATAGAAACAGATGGTGTTTTGGCAGAGTGATTAA  450

seq1  AACATTAGATATCTGTTTTAATGAATTGCCCATCCGGTGTATAAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGATATCTGTTTTAATGAATTGCCCATCCGGTGTATAAAATACT  500

seq1  GCAATAGTGCGACCCAGTCTCCTCAGCCAGTAATTGTGATCTTATTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGTGCGACCCAGTCTCCTCAGCCAGTAATTGTGATCTTATTTACA  550

seq1  GAATATGTTTTCTCCTGGTGGAACCATGTGTTTTATGCTGTGACTCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTTTTCTCCTGGTGGAACCATGTGTTTTATGCTGTGACTCCAAA  600

seq1  TGCCAAAACTTTTGGAATTTTAAGAGAGGAGAAAAAATACCAAGGTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAACTTTTGGAATTTTAAGAGAGGAGAAAAAATACCAAGGTAAAT  650

seq1  CAGAAAAATAGATTATATACTAAAAATCTCCCATTAAGGCATCGTCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATAGATTATATACTAAAAATCTCCCATTAAGGCATCGTCCAAT  700

seq1  CAAAGAAGTCCAATATTCAGTCCAATTTTCTGTGTGATC-TTTGGCTAGT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAAGAAGTCCAATATTCAGTCCAATTTTCTGTGTGATCTTTTGGCTAGT  750

seq1  CACCTAACGTCTCTGGACTGACTTTTCTCACTTTGGAAAACAAAGTTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAACGTCTCTGGACTGACTTTTCTCACTTTGGAAAACAAAGTTGAC  800

seq1  AATCTGGTCGCCTAGTTACCACATGTTTAAG-TAACACAGAGGAGCTGAA  848
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATCTGGTCGCCTAGTTACCACATGTTTAAGTTAACACAGAGGAGCTGAA  850

seq1  GTTCAGATCAT-AATTCGC-TTTGGAAGAAAGATACTAT-GGTAAC-CAT  894
      ||||||||||| ||||||| ||||||||||||||||||| |||||| |||
seq2  GTTCAGATCATAAATTCGCTTTTGGAAGAAAGATACTATGGGTAACTCAT  900

seq1  TAAAATGTGTTGCAAAATGACCAGCAGGGAAGGAAAGTTATCCAATGTGC  944
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGTTGCAATATGACCAGCAGGGAAGGAAAGTTATCCAATGTGC  950

seq1  AACTATTGACCTTCAAGCTCAGAATAAATTTTTTATGCATTTCTGAGCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGACCTTCAAGCTCAGAATAAATTTTTTATGCATTTCTGAGCTA  1000

seq1  ATACTTCCACCTTCACATTAGAAACTATTACAAGTTATAATGATTTAATG  1044
      |||||||||||||||||| ||||||||||||||||| ||||||||  |||
seq2  ATACTTCCACCTTCACATAAGAAACTATTACAAGTT-TAATGATT--ATG  1047

seq1  -TCCTGTATTTAGT-GGGAGGACAAGAAGAAACCCATGGACATCCCCCTG  1092
       ||||||||||||| |||||||||||||  |||||||||||||  |||||
seq2  TTCCTGTATTTAGTGGGGAGGACAAGAAAGAACCCATGGACAT--CCCTG  1095

seq1  CCTGCAAAGCTAATT  1107
      ||  | |||||||||
seq2  CCCTCCAAGCTAATT  1110

seq1: chr4_66904772_66905917
seq2: B6Ng01-164F11.g_69_1202 (reverse)

seq1  AAGCCATAGAACATTTTGGACTTTTATTTTTACAACAGATTTCCTGCATT  50
      ||||||| ||||   |||||||||   | |||||||||||   |||||||
seq2  AAGCCAT-GAAC---TTGGACTTT--ATATTACAACAGAT---CTGCATT  41

seq1  TTGTATTTGTGTGTCTTT-ATAGTAGAGGACTGGGATGGATTTCAGTTGT  99
      | |||||||   |||||| |||||||||||||||||||||||||||||||
seq2  TGGTATTTGGTGGTCTTTAATAGTAGAGGACTGGGATGGATTTCAGTTGT  91

seq1  GATAACACCTGTCTAGTATGAATATTGCCCTGTGTTTTATCCCGGACATT  149
      ||||||||||||  |||||||||||   ||||||||| |||||||||| |
seq2  GATAACACCTGTTCAGTATGAATAT--GCCTGTGTTTAATCCCGGACA-T  138

seq1  GCATAAAATTTTGTGTGAAGATACATACCTATCAGATATTTACTGTTATC  199
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCAT-AAATTTTGTGTGAAGATACATACCTATCAGATATTTACTGTTAT-  186

seq1  CTTTGTCACATAGATATTTACTGCTCTCCTTGGTTTAAGGGTAGCC-TTT  248
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CTTTGTCACATAGATA-TTACTGCTCTCCTTGGTTTAAGGGTAGCCTTTT  235

seq1  AGTACATGAATGAACTTGTGGCTCAAACCTGCAAGTAATTTAAAAATGTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGAATGAACTTGTGGCTCAAACCTGCAAGTAATTTAAAAATGTC  285

seq1  ATAAAAATTA-TTTTGACTTCTGGTATACAGTACTTAGAAAGTGAAACAG  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTATTTTTGACTTCTGGTATACAGTACTTAGAAAGTGAAACAG  335

seq1  TGATTTCAAGACTCAATGTCAACTAACAAGTTTTGTGGCAGTTTTCCCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAGACTCAATGTCAACTAACAAGTTTTGTGGCAGTTTTCCCTT  385

seq1  TTCCTTTGTGATGTGTCTCCAACATTCAGCTTCTATTATGCGGTATGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTGATGTGTCTCCAACATTCAGCTTCTATTATGCGGTATGAAA  435

seq1  CTTTCTTTTCCATTCTTACTTCCCCTCCTTCCAAGCTCTGCCTTCTCTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCCATTCTTACTTCCCCTCCTTCCAAGCTCTGCCTTCTCTCC  485

seq1  AAGTCTTTCAGGATCTTCATTCCAACTCTAAGTGTGAAAACAGCTGCTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTCAGGATCTTCATTCCAACTCTAAGTGTGAAAACAGCTGCTAA  535

seq1  CGGCTGATGCTTCCAAATTGAGATGGGGCCACAATGCAAGCAAGAGGCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGATGCTTCCAAATTGAGATGGGGCCACAATGCAAGCAAGAGGCCA  585

seq1  AGACAAGAATCATTTTGAATAGAAAAAGGCTTGGCAGGGTCTAATGCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAATCATTTTGAATAGAAAAAGGCTTGGCAGGGTCTAATGCTCT  635

seq1  GGGACCCATCTGTGAGAAAAGATCATTAATGTTAATCTAAGTGAGCTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCATCTGTGAGAAAAGATCATTAATGTTAATCTAAGTGAGCTCAG  685

seq1  GGAGCAAAGAAATAGAGCGGTGTTTTCTGAAGGAAATAGCTGGTGCTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAAGAAATAGAGCGGTGTTTTCTGAAGGAAATAGCTGGTGCTAAG  735

seq1  GGCTGGTTTTATTTGACAGGGACAATGAGAAATCACTTGCCTGTGCTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTTTATTTGACAGGGACAATGAGAAATCACTTGCCTGTGCTAAA  785

seq1  TGGAAACATGATTATCTATAACTGATCCATGGTTTTCAGCCCTCTTCATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACATGATTATCTATAACTGATCCATGGTTTTCAGCCCTCTTCATT  835

seq1  GCTCTGGGACAGAGCAACCCAATAGGAAGCAGCAGGAAAGTCAAGTGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGACAGAGCAACCCAATAGGAAGCAGCAGGAAAGTCAAGTGAAG  885

seq1  ATCCTTACAATGCCAAAGGCTGTGCTCTAGGATTGGGTAAAGTGTTCCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTACAATGCCAAAGGCTGTGCTCTAGGATTGGGTAAAGTGTTCCAC  935

seq1  TCTAGGATAAAGAATATGGTTGCTTAGCTTTAAAAATGTATCAGCTAGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATAAAGAATATGGTTGCTTAGCTTTAAAAATGTATCAGCTAGGG  985

seq1  CTGGAGAGATGGTTCAGTAGTTACACGCACTAACTGTTCTTCCAGAGTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGATGGTTCAGTAGTTACACGCACTAACTGTTCTTCCAGAGTCC  1035

seq1  CTGAGTTCAATTCTCAGAAACCACATGGTGGCTCACAACCATCAGTTATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAATTCTCAGAAACCACATGGTGGCTCACAACCATCAGTTATG  1085

seq1  TGTTCCGATGTCCTCTTCTCTTGTTTTTGAAAAGACTGACAGTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCGATGTCCTCTTCTCTTGTTTTTGAAAAGACTGACAGTGAATTC  1134