BAC Information

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BAC

Clone NameB6Ng01-165H15
Chromosome4 (Build37)
Map Location 87,634,744 - 87,635,757
singlet/doubletsinglet
Overlap geneMllt3
Upstream geneSlc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H15.g
ACCDH957525
length1,022
definitionDH957525|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttttcaaatgataagaatataaagactctctctttccctccc
tccctccctccctcccttccttccttctttgtatctagattcctatttga
aagcattgactgctctgatatattttagcagggagggatttgataaaggg
gattaggtgcttaatatatcttgaaggggcagaaagggcaggctgtgggc
tgactttctaggaatgataccaagagtaaaatcgcagagctggccagtca
agggaactgcagtctctgctgtgagaggctacctcagcagccaagcagct
gttgagggtctgtagtctgtttgctggctccttggtgtgcctggactcta
tacctttgaagttgagcactgactgacagtaccacagtgctaggagctca
cccgaacacaggatttacctttagctttcggatctttcctagttgtctga
cttgtagctgtccttcagttcactgaagggacaggatatgttttacaaac
aagtctgcagccagtgcctacctggttagtgttttggtgaatcgctgctg
cctccagagttgtaattttgctgtttggtttggtttggtttggtttttca
tgtttctctgtagtagaccaggctggcctcaaactcacagaaatatgatg
gtctctgccaccagagtaatgggactaaaggtgtgcgtgccatcttgcct
ggctctcagggcatgagtattaataggcgggtttacttgattgaaagttc
tgtgaactgagatggcactttgaaatgaaatctatgtttttcttctctgc
gggattttttttttttccttttctttctctttccaggtcagagtctctgg
gaaagataagaacaaattataatatttcctgaatcttacttgatgacatc
acgggttgaaaagaccggagagttcagttccacaaatgcagccctgtcag
cgttgttcctcttggtgagttagtggttttcaactctaaatggacgcttt
cgtgtataggaatgtctatacc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87634744_87635757
seq2: B6Ng01-165H15.g_68_1089 (reverse)

seq1  GGTATCGACATTCC-ATAGCACGAAAGCGTCAATTAAGAGATGAAAA-CA  48
      ||||| |||||||| ||| |||||||||||| ||| |||| |||||| ||
seq2  GGTATAGACATTCCTATA-CACGAAAGCGTCCATTTAGAGTTGAAAACCA  49

seq1  CTAACTCAACAAGAGGAACAACGCTGACA-GGCTGCATTTGTGGAACTGA  97
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CTAACTCACCAAGAGGAACAACGCTGACAGGGCTGCATTTGTGGAACTGA  99

seq1  ACTCTCCGGTC-TTTCAAACCGTGATGTCATCAAGTTAGATTCAGG-AAT  145
      ||||||||||| |||||| ||||||||||||||||| ||||||||| |||
seq2  ACTCTCCGGTCTTTTCAACCCGTGATGTCATCAAGTAAGATTCAGGAAAT  149

seq1  ATTATAATTTGTTCTTATCTTT-CCAGAGACTCTGACCTGGAAAGAG-AA  193
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  ATTATAATTTGTTCTTATCTTTCCCAGAGACTCTGACCTGGAAAGAGAAA  199

seq1  GAAAAGG-AAAAAAAAAAATCCCGCAGAGAAG-AAAACATAGATTTCATT  241
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAAGGAAAAAAAAAAAATCCCGCAGAGAAGAAAAACATAGATTTCATT  249

seq1  TCAAAGTGCCATCTCAGTTCACAGAACTTTCAATCAAGTAAACCCGCCTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGCCATCTCAGTTCACAGAACTTTCAATCAAGTAAACCCGCCTA  299

seq1  TTAATACTCATGCCCTGAGAGCCAGGCAAGATGGCACGCACACCTTTAGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTCATGCCCTGAGAGCCAGGCAAGATGGCACGCACACCTTTAGT  349

seq1  CCCATTACTCTGGTGGCAGAGACCATCATATTTCTGTGAGTTTGAGGCCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACTCTGGTGGCAGAGACCATCATATTTCTGTGAGTTTGAGGCCA  399

seq1  GCCTGGTCTACTACAGAGAAACATGAAAAACCAAACCAAACCAAACCAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACTACAGAGAAACATGAAAAACCAAACCAAACCAAACCAAA  449

seq1  CAGCAAAATTACAACTCTGGAGGCAGCAGCGATTCACCAAAACACTAACC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAATTACAACTCTGGAGGCAGCAGCGATTCACCAAAACACTAACC  499

seq1  AGGTAGGCACTGGCTGCAGACTTGTTTGTAAAACATATCCTGTCCCTTCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCACTGGCTGCAGACTTGTTTGTAAAACATATCCTGTCCCTTCA  549

seq1  GTGAACTGAAGGACAGCTACAAGTCAGACAACTAGGAAAGATCCGAAAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTGAAGGACAGCTACAAGTCAGACAACTAGGAAAGATCCGAAAGC  599

seq1  TAAAGGTAAATCCTGTGTTCGGGTGAGCTCCTAGCACTGTGGTACTGTCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTAAATCCTGTGTTCGGGTGAGCTCCTAGCACTGTGGTACTGTCA  649

seq1  GTCAGTGCTCAACTTCAAAGGTATAGAGTCCAGGCACACCAAGGAGCCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTCAACTTCAAAGGTATAGAGTCCAGGCACACCAAGGAGCCAG  699

seq1  CAAACAGACTACAGACCCTCAACAGCTGCTTGGCTGCTGAGGTAGCCTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGACTACAGACCCTCAACAGCTGCTTGGCTGCTGAGGTAGCCTCT  749

seq1  CACAGCAGAGACTGCAGTTCCCTTGACTGGCCAGCTCTGCGATTTTACTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGAGACTGCAGTTCCCTTGACTGGCCAGCTCTGCGATTTTACTC  799

seq1  TTGGTATCATTCCTAGAAAGTCAGCCCACAGCCTGCCCTTTCTGCCCCTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATCATTCCTAGAAAGTCAGCCCACAGCCTGCCCTTTCTGCCCCTT  849

seq1  CAAGATATATTAAGCACCTAATCCCCTTTATCAAATCCCTCCCTGCTAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATATTAAGCACCTAATCCCCTTTATCAAATCCCTCCCTGCTAAA  899

seq1  ATATATCAGAGCAGTCAATGCTTTCAAATAGGAATCTAGATACAAAGAAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAGAGCAGTCAATGCTTTCAAATAGGAATCTAGATACAAAGAAG  949

seq1  GAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGAGAGTCTTTATATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGAGAGTCTTTATATT  999

seq1  CTTATCATTTGAAAAGGGAATTC  1014
      |||||||||||||||||||||||
seq2  CTTATCATTTGAAAAGGGAATTC  1022