BAC Information

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BAC

Clone NameB6Ng01-166N18
Chromosome4 (Build37)
Map Location 111,469,317 - 111,470,423
singlet/doubletsinglet
Overlap geneSpata6
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneLOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166N18.bB6Ng01-166N18.g
ACCDH958512DH958513
length1,1001,122
definitionDH958512|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N18, 5' end.DH958513|Mus musculus domesticus DNA, BAC clone: B6Ng01-166N18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaccagattatttcaaatttaggacttgaatctatgattctaga
tgtcagagatgagttctccaggaggcagttcacctgtgaagaaagcaagc
aggcaaaacccagcaaattccaaaaagtgaatcaaaacagaacaattaga
gagggaacctagggtgctgttgcaatgagaacaaccaaaactctcattcc
ctgggcagctcaaagatgaatttagcaatttacagttgttcatgtatatg
aaacttcctcctgtaaacttacacaaaataccagacagttatattgtaga
accattagcaatgcattaccagttttcaagtctaatgaacacatgaaact
atcattaagagggttctacagccctggaagactgtgaacttagctttgga
cttggtttaacaaacctactacaagagctattttaccttggcagctagag
agaccccttagaagggaagctgaagtgatcttagaggatcatagaggaag
gtgcaatttacacattgggggttttattggtgtctgagatctttgcatct
atatactttagtgggctcagagctgtcaacagctaattcactagatgtct
cccccagtcggtatgctctgttatcttaatggaagctttttagggcataa
ttcagaaagagggtggggaagcaccatcttgacagttgtgtctctgaaag
tgaaaggttaagaggtgatatttataaagtttagaatcatgaacatttta
atggagatggcttttagtatgagaatgtaattaacaaagtttgtatataa
aagctcagggttagtaaacacagaggctagaggcttagcaagtcataata
gtggagcagtgaagaaagtattcatctgttctgagaaaggattgcttctt
cacataaagagagaacagtattgttttgagaaggcaaacaagtcatatgg
aatgaggtgggccttagttcttcatgtagtaagccataatggatgcagtg
tctggattctcctgtttcaataggttatgttttttgctttatgcactacc
atcattagtttttgttgaactcaacatgacaaacttggttgccatcattt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaataatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcttccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctccatg
agagctagagaagtacccagagctaagggatctcaccctatagtgacaac
attatgaactacagtaccctgagctctgactctagctgcatatgtatcaa
agattgctagtcgcatcactgaaagaggcatgacccgactgtggccgtaa
ggagcagccaaggggatggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111469317_111470423
seq2: B6Ng01-166N18.b_46_1145

seq1  GAATTCAACCAGATTATTTCAAATTTAGGACTTGAATCTATGATTCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCAGATTATTTCAAATTTAGGACTTGAATCTATGATTCTAGA  50

seq1  TGTCAGAGATGAGTTCTCCAGGAGGCAGTTCACCTGTGAAGAAAGCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGATGAGTTCTCCAGGAGGCAGTTCACCTGTGAAGAAAGCAAGC  100

seq1  AGGCAAAACCCAGCAAATTCCAAAAAGTGAATCAAAACAGAACAATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAACCCAGCAAATTCCAAAAAGTGAATCAAAACAGAACAATTAGA  150

seq1  GAGGGAACCTAGGGTGCTGTTGCAATGAGAACAACCAAAACTCTCATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACCTAGGGTGCTGTTGCAATGAGAACAACCAAAACTCTCATTCC  200

seq1  CTGGGCAGCTCAAAGATGAATTTAGCAATTTACAGTTGTTCATGTATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCTCAAAGATGAATTTAGCAATTTACAGTTGTTCATGTATATG  250

seq1  AAACTTCCTCCTGTAAACTTACACAAAATACCAGACAGTTATATTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCTCCTGTAAACTTACACAAAATACCAGACAGTTATATTGTAGA  300

seq1  ACCATTAGCAATGCATTACCAGTTTTCAAGTCTAATGAACACATGAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGCAATGCATTACCAGTTTTCAAGTCTAATGAACACATGAAACT  350

seq1  ATCATTAAGAGGGTTCTACAGCCCTGGAAGACTGTGAACTTAGCTTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAAGAGGGTTCTACAGCCCTGGAAGACTGTGAACTTAGCTTTGGA  400

seq1  CTTGGTTTAACAAACCTACTACAAGAGCTATTTTACCTTGGCAGCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTAACAAACCTACTACAAGAGCTATTTTACCTTGGCAGCTAGAG  450

seq1  AGACCCCTTAGAAGGGAAGCTGAAGTGATCTTAGAGGATCATAGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTTAGAAGGGAAGCTGAAGTGATCTTAGAGGATCATAGAGGAAG  500

seq1  GTGCAATTTACACATTGGGGGTTTTATTGGTGTCTGAGATCTTTGCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTTACACATTGGGGGTTTTATTGGTGTCTGAGATCTTTGCATCT  550

seq1  ATATACTTTAGTGGGCTCAGAGCTGTCAACAGCTAATTCACTAGATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTAGTGGGCTCAGAGCTGTCAACAGCTAATTCACTAGATGTCT  600

seq1  CCCCCAGTCGGTATGCTCTGTTATCTTAATGGAAGCTTTTTAGGGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTCGGTATGCTCTGTTATCTTAATGGAAGCTTTTTAGGGCATAA  650

seq1  TTCAGAAAGAGGGTGGGGAAGCACCATCTTGACAGTTGTGTCTCTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGAGGGTGGGGAAGCACCATCTTGACAGTTGTGTCTCTGAAAG  700

seq1  TGAAAGGTTAAGAGGTGATATTTATAAAGTTTAGAATCATGAACATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTTAAGAGGTGATATTTATAAAGTTTAGAATCATGAACATTTTA  750

seq1  ATGGAGATGGCTTTTAGTATGAGAATGTAATTAACAAAGTTTGTATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGGCTTTTAGTATGAGAATGTAATTAACAAAGTTTGTATATAA  800

seq1  AAGCTCAGGGTTAGTAAACACAGAGGCTAGAGGCTTAGCAAGTCATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGGGTTAGTAAACACAGAGGCTAGAGGCTTAGCAAGTCATAATA  850

seq1  GTGGAGCAGTGAAGAAAGTATTCATCTGTTCTGAGAAAGGAATTGCTTCT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGGAGCAGTGAAGAAAGTATTCATCTGTTCTGAGAAAGG-ATTGCTTCT  899

seq1  TCACATAAAGAGAAGAACAGTATTGTTTTGAGAAGGCAAAACAAGTCATA  950
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TCACATAAAGAG-AGAACAGTATTGTTTTGAGAAGGC-AAACAAGTCATA  947

seq1  TGGAATGAAGGTGGGCCTTAGTTCTTCATGTAGTTAAGCCAT-ATGGATG  999
      ||||||| ||||||||||||||||||||||||| |||||||| |||||||
seq2  TGGAATG-AGGTGGGCCTTAGTTCTTCATGTAG-TAAGCCATAATGGATG  995

seq1  CAAGTGTTCTGGATTCTCCTGTTTCAATAAGTTATGTTTTTTGCTTTATG  1049
      | |||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  C-AGTG-TCTGGATTCTCCTGTTTCAATAGGTTATGTTTTTTGCTTTATG  1043

seq1  CACTACACATCATTAGTTTTTGTTGAACTCAACATGACAAACTTTAGTTG  1099
      |||||| ||||||||||||||||||||||||||||||||||| || ||||
seq2  CACTAC-CATCATTAGTTTTTGTTGAACTCAACATGACAAAC-TTGGTTG  1091

seq1  -CATCATTT  1107
       ||||||||
seq2  CCATCATTT  1100