BAC Information

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BAC

Clone NameB6Ng01-169H08
Chromosome4 (Build37)
Map Location 87,079,120 - 87,143,101
singlet/doubletdoublet
Overlap genenone
Upstream gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H08.bB6Ng01-169H08.g
ACCDH960433DH960434
length3041,128
definitionDH960433|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H08, 5' end.DH960434|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,142,797 - 87,143,101)(87,079,120 - 87,080,277)
sequence
acttcccaagtctttccctctgaaaccatgatcaatttcttacagcagag
cagcaacatctccagtcagacttagagcaagactaggacatgcttcttgg
cttctccgcacccagcagattccaaaggacaagggcaagcaggcctgcgg
gaggggcacttgcgtaggagctaagcttcctgtgaatggaagcgggaagc
cccagctgggacacgccagtggtaaaacagaacacaactcttgtcataac
taagattatttaaatttgtatttattcatttggtgtgtgtatggggtggg
gtgg
gaattcttaagcaggcctgtgttcacatggccagccctctcctctacccc
tttgtggatccccacatggctgtgctttcgacatctatgggatttggtgt
ttggatcaactccattcatacgaattgtccatattgctgcatgcgctggg
tagaatactcagggcagaagagaaccttgctgcttctcctaccccagggg
tcttcagattttatgtgcttgatcttcgttggtggccaagatgaaaatgc
ttgctacatatagcagctttcctccttgatatttgggaggggggcagcta
cgatgatgggcaaccttagctaccttacttctgaaaagccatccgaagaa
gccaagaataagccatgtgaggctgtgggccttcctatgtggtgatctaa
ctgaaatttttgggaaggttaattatagaaccactgtagattgtggttct
agtggcttgtggcatgagacagtgagctgtagttttttcatctgtagaat
gaagatgataaaaattacccataggggttgtcaggagaattaagttgcca
caaagtgtttgatggatggtttggaacaggaggatgctctcctctttgcc
tgtctcccccctcctctcacagcctgcaagcctgaatagcaggtaaggaa
tttgttatctatgttcataaacatccctaaagactcatggttcttgcatt
aaaaaccacacttacagttcccagctaattgagtgaccttgggcctgagt
ttctccacacaaatattttagctggaattttaaaaactagtaattttacc
cctggaaaaaaatggtacatttttgttggacaagtacagagaattctttc
atcacctgaacctgggtaggaattgcatgatatatagatagcaactcaca
gtaactaatgattaaataaatggttcagcaaagaaaagtctagtaaactt
catatttcaccctctggcatgatctacacagtttgcatcttaatcactgt
gttgcatccagaagatgtgtctaaatgattttgtgatgggcatactcatc
acagaagatgcctgctgtcatcggctcttcacgagtcgcaatgcttgagt
ggttacagattacagcgactctgtctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87142797_87143101
seq2: B6Ng01-169H08.b_53_356 (reverse)

seq1  CCACCCCACCCCATACACACACCAAATGAATAAATACAAATTTAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCCATACACACACCAAATGAATAAATACAAATTTAAATAAT  50

seq1  CTTAGTTATGACAAGAGTTGTGTTCTGTTTTACCACTGGCGTGTCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTATGACAAGAGTTGTGTTCTGTTTTACCACTGGCGTGTCCCAGC  100

seq1  TGGGGCTTCCCGCTTCCATTCACAGGAAGCTTAGCTCCTACGCAAGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTCCCGCTTCCATTCACAGGAAGCTTAGCTCCTACGCAAGTGCC  150

seq1  CCTCCCGCAGGCCTGCTTGCCCTTGTCCTTTGGAATCTGCTGGGTGCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGCAGGCCTGCTTGCCCTTGTCCTTTGGAATCTGCTGGGTGCGGA  200

seq1  GAAGCCAAGAAGCATGTCCTAGTCTTGCTCTAAGTCTGACTGGAGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAGAAGCATGTCCTAGTCTTGCTCTAAGTCTGACTGGAGATGTT  250

seq1  GCTGCTCTGCTGTAAGAAATTGATCATGGTTTGCAGAGGGAAAGACTTGG  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTGCTCTGCTGTAAGAAATTGATCATGGTTT-CAGAGGGAAAGACTTGG  299

seq1  GAAGT  305
      |||||
seq2  GAAGT  304

seq1: chr4_87079120_87080277
seq2: B6Ng01-169H08.g_66_1193

seq1  GAATTCTTAAGCAGGCCTGTGTTCACATGGCCAGCCCTCTCCTCTACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCAGGCCTGTGTTCACATGGCCAGCCCTCTCCTCTACCCC  50

seq1  TTTGTGGATCCCCACATGGCTGTGCTTTCGACATCTATGGGATTTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGATCCCCACATGGCTGTGCTTTCGACATCTATGGGATTTGGTGT  100

seq1  TTGGATCAACTCCATTCATACGAATTGTCCATATTGCTGCATGCGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAACTCCATTCATACGAATTGTCCATATTGCTGCATGCGCTGGG  150

seq1  TAGAATACTCAGGGCAGAAGAGAACCTTGCTGCTTCTCCTACCCCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACTCAGGGCAGAAGAGAACCTTGCTGCTTCTCCTACCCCAGGGG  200

seq1  TCTTCAGATTTTATGTGCTTGATCTTCGTTGGTGGCCAAGATGAAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGATTTTATGTGCTTGATCTTCGTTGGTGGCCAAGATGAAAATGC  250

seq1  TTGCTACATATAGCAGCTTTCCTCCTTGATATTTGGGAGGGGGGCAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACATATAGCAGCTTTCCTCCTTGATATTTGGGAGGGGGGCAGCTA  300

seq1  CGATGATGGGCAACCTTAGCTACCTTACTTCTGAAAAGCCATCCGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGATGGGCAACCTTAGCTACCTTACTTCTGAAAAGCCATCCGAAGAA  350

seq1  GCCAAGAATAAGCCATGTGAGGCTGTGGGCCTTCCTATGTGGTGATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAATAAGCCATGTGAGGCTGTGGGCCTTCCTATGTGGTGATCTAA  400

seq1  CTGAAATTTTTGGGAAGGTTAATTATAGAACCACTGTAGATTGTGGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTTTGGGAAGGTTAATTATAGAACCACTGTAGATTGTGGTTCT  450

seq1  AGTGGCTTGTGGCATGAGACAGTGAGCTGTAGTTTTTTCATCTGTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGTGGCATGAGACAGTGAGCTGTAGTTTTTTCATCTGTAGAAT  500

seq1  GAAGATGATAAAAATTACCCATAGGGGTTGTCAGGAGAATTAAGTTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATAAAAATTACCCATAGGGGTTGTCAGGAGAATTAAGTTGCCA  550

seq1  CAAAGTGTTTGATGGATGGTTTGGAACAGGAGGATGCTCTCCTCTTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTTTGATGGATGGTTTGGAACAGGAGGATGCTCTCCTCTTTGCC  600

seq1  TGTCTCCCCCCTCCTCTCACAGCCTGCAAGCCTGAATAGCAGGTAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCCCCTCCTCTCACAGCCTGCAAGCCTGAATAGCAGGTAAGGAA  650

seq1  TTTGTTATCTATGTTCATAAACATCCCTAAAGACTCATGGTTCTTGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATCTATGTTCATAAACATCCCTAAAGACTCATGGTTCTTGCATT  700

seq1  AAAAACCACACTTACAGTTCCCAGCTAATTGAGTGACCTTGGGCCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACACTTACAGTTCCCAGCTAATTGAGTGACCTTGGGCCTGAGT  750

seq1  TTCTCCACACAAATATTTTAGCTGGAATTTTAAAAACTAGTAATTTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACACAAATATTTTAGCTGGAATTTTAAAAACTAGTAATTTTACC  800

seq1  CCTGGAAAAAAATGGTACATTTTTGTTGGACAAGTACAGAGAATTCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAAAAATGGTACATTTTTGTTGGACAAGTACAGAGAATTCTTTC  850

seq1  ATCACCTGAACCTGGGTAGGAATTGCATGATATATAGATAGCAACTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGAACCTGGGTAGGAATTGCATGATATATAGATAGCAACTCACA  900

seq1  GTAACTAATGATTTATAATAAATGGTTCAGCAAAGAAAAGTCTAGGTAAA  950
      |||||||||||||   |||||||||||||||||||||||||||| |||||
seq2  GTAACTAATGATT--AAATAAATGGTTCAGCAAAGAAAAGTCTA-GTAAA  947

seq1  CTTCATATTTCACCCCTCTGGCAATGATCTACACAAGGTTTGCATCTTAA  1000
      |||||||||||| ||||||||| ||||||||||||  ||||||||||| |
seq2  CTTCATATTTCA-CCCTCTGGC-ATGATCTACACA--GTTTGCATCTT-A  992

seq1  ATCAACTGGTGGTTGCACCCAGAAGGATGTGGTCTAAATAGATTTGTGTG  1050
      ||| ||||   |||||| |||||| ||||| |||||||| ||||| ||||
seq2  ATC-ACTG--TGTTGCATCCAGAA-GATGT-GTCTAAAT-GATTT-TGTG  1035

seq1  ATGGGGCAATTACTCATCACAGAAAGGATGCCTGCTGTCATCGGGGCTTC  1100
      || |||||  ||||||||||||||  ||||||||||||||||  ||||  
seq2  AT-GGGCA--TACTCATCACAGAA--GATGCCTGCTGTCATC--GGCTCT  1078

seq1  TCACGAAGCAGCAAGTGCTTGAGTGGTTACAGAGTTACAGGGCTGACCTC  1150
      ||||| ||  |||| |||||||||||||||||| ||||||    |||   
seq2  TCACG-AGTCGCAA-TGCTTGAGTGGTTACAGA-TTACAG---CGAC--T  1120

seq1  CTGTCTAT  1158
      ||||||||
seq2  CTGTCTAT  1128