BAC Information

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BAC

Clone NameB6Ng01-170C04
Chromosome4 (Build37)
Map Location 54,468,017 - 54,548,554
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170C04.bB6Ng01-170C04.g
ACCDH960927DH960928
length1,1841,153
definitionDH960927|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C04, 5' end.DH960928|Mus musculus domesticus DNA, BAC clone: B6Ng01-170C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,468,017 - 54,469,218)(54,547,401 - 54,548,554)
sequence
gaattcctacagccaggctttgagaagcaaatgcttcttttagcatggaa
agagagttggttggtgtcttgttttctcaaaacccaggtcttaaaatagg
tggggtgtgactttcagtctgaaaccagaaagtgccttctttcttcagca
gccatagctagaggaatcagtcacttgattgacagagcctctaatagact
cctgcttttggtagcacaatggtactgcaggtgtctgtcaaaaggatgtc
tcaggtaggacagtgagccttgtccctggttagtcatacttgacgataca
caaacaagatctttgtttagcctgaaagtaggtttaatctaccattccac
aactgtctcaggctgtccaattgttctttataacattacacacatctata
ctttttctctagttgtaaaccttttttgcctacaataagagaatagtcac
atagctcaagaatactattttattctaattgatgagatttggcttttgtg
gttgttagctccagtccagttgtttctaggacacagttttacgaaactac
ctttgacctgtaggaaggcagttgtctcctgaaagatgttctgatgggtc
cagatgattgaagctgaagtctgccctgatattagtaaaataaaataccc
ctgaacatagattcgtagtgaacaggaagtaataaaagaacagtactggg
cagaaacaggggaagcaagggttacaattcctaacttttccattaaagga
acatgaaaagatggtggcttgtcactaactgcaggaggttgatggtcttc
ctctcacccaccccgtccattcttccctttcctcaccctctcttccctca
cccttttcctactattcttgggccaataaaccagaaactgtgtatctaga
actccatctagatttatataggtagaacatctgtatctacataataaaaa
gacattgtttttcttttttatggttaggcatatgtgaatcttgctgattt
tcaataatgtattgtgaatactggagctggagccactgacaaacactttt
tgtggagaaataaagaaagtgcttcagaaccatgaatcttcattagaatg
tactattccgaatacatttttctttcttagagtcatgttgaccattgttt
aaacttgtctcctcgaatcatttatgcttataaa
gaattctagacgtgaagtagttttcgtccagtaaaactttatctttcatg
tagctactgcagtggttcacgtaaaaacctgatttcctttgtagacaggt
gaattttcttttcttttcttggatggttgcccctccaccccctgctgagg
cacttccctctctttggagttatttggctgttgtcaaacatttttaactt
ttggaatgttgcctgactttagttctaagaacttttttttttaaatttgt
ttcctctaaaacacccaagaactcactgttagagctgtctcgatctgttc
tccatgattcttgacctccaaaagcttctgtgaaaatctttgctcccaac
tcttcagactactcttcctctttccagttgggcccgtttttataattcgg
ttggctattcacttttgtctattaagtattggctatgttaaaggatctaa
tatagccaatcttaatttgcttgaataaagcagataaccaaataaaaacc
cacttatctctgtagattgatattttcttctctttaaaccggtgttctgc
tgtcagtcacccacttgttcattagctacaggatctgactttgagttctt
tattcacagtgatggctttcctcagatcttctagggagagtggctggaga
atccgtcttcgcagccaagttgccctgtttctctccactctattggctgc
tactaccgggcagaaaggaagacaggagctttgtcttggatgtgcttacc
cttccgaaggaggcctgacagggaatgagacatatgcctggacagcttca
aggggtgatctcggctctggtatgagtgcccccactagatactatcagtg
tgtcttcctcatttttctgagctgaattctaacaatattgctgttgccca
gaggtgagcacctctggactggccagggtctcttcaagggaaagggacag
atgtcagactgatgctttcccacgtccccaggtctgtcactctgtgtctt
cttctttgtagccacccttgatgggcaggtgaacattttcgaaggcactc
tttccatgtgaagaaagccgtacttcccacgttctatgcaatccgcctgc
ttttcggaattaaggaactcatcccccctctctgcagggcgagagcttgg
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54468017_54469218
seq2: B6Ng01-170C04.b_43_1226

seq1  GAATTCCTACAGCCAGGCTTTGAGAAGCAAATGCTTCTTTTAGCATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGCCAGGCTTTGAGAAGCAAATGCTTCTTTTAGCATGGAA  50

seq1  AGAGAGTTGGTTGGTGTCTTGTTTTCTCAAAACCCAGGTCTTAAAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTGGTTGGTGTCTTGTTTTCTCAAAACCCAGGTCTTAAAATAGG  100

seq1  TGGGGTGTGACTTTCAGTCTGAAACCAGAAAGTGCCTTCTTTCTTCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGACTTTCAGTCTGAAACCAGAAAGTGCCTTCTTTCTTCAGCA  150

seq1  GCCATAGCTAGAGGAATCAGTCACTTGATTGACAGAGCCTCTAATAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGCTAGAGGAATCAGTCACTTGATTGACAGAGCCTCTAATAGACT  200

seq1  CCTGCTTTTGGTAGCACAATGGTACTGCAGGTGTCTGTCAAAAGGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTGGTAGCACAATGGTACTGCAGGTGTCTGTCAAAAGGATGTC  250

seq1  TCAGGTAGGACAGTGAGCCTTGTCCCTGGTTAGTCATACTTGACGATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGGACAGTGAGCCTTGTCCCTGGTTAGTCATACTTGACGATACA  300

seq1  CAAACAAGATCTTTGTTTAGCCTGAAAGTAGGTTTAATCTACCATTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGATCTTTGTTTAGCCTGAAAGTAGGTTTAATCTACCATTCCAC  350

seq1  AACTGTCTCAGGCTGTCCAATTGTTCTTTATAACATTACACACATCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTCAGGCTGTCCAATTGTTCTTTATAACATTACACACATCTATA  400

seq1  CTTTTTCTCTAGTTGTAAACCTTTTTTGCCTACAATAAGAGAATAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTAGTTGTAAACCTTTTTTGCCTACAATAAGAGAATAGTCAC  450

seq1  ATAGCTCAAGAATACTATTTTATTCTAATTGATGAGATTTGGCTTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCAAGAATACTATTTTATTCTAATTGATGAGATTTGGCTTTTGTG  500

seq1  GTTGTTAGCTCCAGTCCAGTTGTTTCTAGGACACAGTTTTACGAAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAGCTCCAGTCCAGTTGTTTCTAGGACACAGTTTTACGAAACTAC  550

seq1  CTTTGACCTGTAGGAAGGCAGTTGTCTCCTGAAAGATGTTCTGATGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACCTGTAGGAAGGCAGTTGTCTCCTGAAAGATGTTCTGATGGGTC  600

seq1  CAGATGATTGAAGCTGAAGTCTGCCCTGATATTAGTAAAATAAAATACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTGAAGCTGAAGTCTGCCCTGATATTAGTAAAATAAAATACCC  650

seq1  CTGAACATAGATTCGTAGTGAACAGGAAGTAATAAAAGAACAGTACTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATAGATTCGTAGTGAACAGGAAGTAATAAAAGAACAGTACTGGG  700

seq1  CAGAAACAGGGGAAGCAAGGGTTACAATTCCTAACTTTTCCATTAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAGGGGAAGCAAGGGTTACAATTCCTAACTTTTCCATTAAAGGA  750

seq1  ACATGAAAAGATGGTGGCTTGTCACTAACTGCAGGAGGTTGATGGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAAGATGGTGGCTTGTCACTAACTGCAGGAGGTTGATGGTCTTC  800

seq1  CTCTCACCCACCCCGTCCATTCTTCCCTTTCCTCACCCTCTCTTCCCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCCACCCCGTCCATTCTTCCCTTTCCTCACCCTCTCTTCCCTCA  850

seq1  CCCTTTTCCTACTATTCTTGGGCCAATAAACCAGAAACTGTGTATCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCTACTATTCTTGGGCCAATAAACCAGAAACTGTGTATCTAGA  900

seq1  ACTCCATCTAGATTTATATAGGTAGAACATCTGTATCTACATAATAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCTAGATTTATATAGGTAGAACATCTGTATCTACATAATAAAAA  950

seq1  GACATTG-TTTTCTTTTTTATGGTTAGGCATATGTGAATCTTGCTGATTT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTTTTCTTTTTTATGGTTAGGCATATGTGAATCTTGCTGATTT  1000

seq1  TCAAATAATGTATTGTGAATACTGGAAGCTGGAGCCACCTTGACAAATCA  1049
      || |||||||||||||||||||||| ||||||||||||  ||||||| ||
seq2  TC-AATAATGTATTGTGAATACTGG-AGCTGGAGCCAC--TGACAAA-CA  1045

seq1  CTTTTGGTGGAGAATTAAAGAAAAGTGCTACAGAACCATGAATCTTCATC  1099
      ||||| |||||||| ||||| |||||||| ||||||||||||||||||| 
seq2  CTTTTTGTGGAGAAATAAAG-AAAGTGCTTCAGAACCATGAATCTTCAT-  1093

seq1  TAGAATGTACTATTCAGAATACATTTTTCTTTCCTAGAGTTCATTGTTGT  1149
      ||||||||||||||| ||||||||||||||||| ||||| ||| ||||| 
seq2  TAGAATGTACTATTCCGAATACATTTTTCTTTCTTAGAG-TCA-TGTTG-  1140

seq1  ACTCATTTGTTTAAAACTTGTCTCCTCCAAAAATCATATTTATATGCTT-  1198
      || || |||||| ||||||||||||||    |||||    | ||||||| 
seq2  AC-CA-TTGTTT-AAACTTGTCTCCTC---GAATCA----TTTATGCTTA  1180

seq1  TAAA  1202
      ||||
seq2  TAAA  1184

seq1: chr4_54547401_54548554
seq2: B6Ng01-170C04.g_69_1221 (reverse)

seq1  AAACCAAGCTCTCGGCCTGTCCAGA-AGGGGTGATGAGTTCCTTAAAAAT  49
      |||||||||||||| ||||  |||| ||||| ||||||||||||  || |
seq2  AAACCAAGCTCTCGCCCTG--CAGAGAGGGGGGATGAGTTCCTT--AATT  46

seq1  CAG-AAAGCAGGCGGATTGCTATGAACGTGGGAAGTACGGC-TTCCTCCC  97
      | | ||||||||||||||||   |||||||||||||||||| ||| || |
seq2  CCGAAAAGCAGGCGGATTGCATAGAACGTGGGAAGTACGGCTTTCTTCAC  96

seq1  ATGGAGGAGGTGCCTTCGAAAATGTTCACTTGCCAATCAAGGGTGGCTAC  147
      |||||    |||||||||||||||||||| |||| |||||||||||||||
seq2  ATGGAAAGAGTGCCTTCGAAAATGTTCACCTGCCCATCAAGGGTGGCTAC  146

seq1  AAAGAAGAGGACACAGAGTGACAGACCTGGGGACGTGGGAAAGCATCAGT  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGACACAGAGTGACAGACCTGGGGACGTGGGAAAGCATCAGT  196

seq1  CTGACATCTGTCCCTTTCCCTTGAAGAGACCCTGGCCAGTCCAGAGGTGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCTGTCCCTTTCCCTTGAAGAGACCCTGGCCAGTCCAGAGGTGC  246

seq1  TCACCTCTGGGCAACAGCAATATTGTTAGAATTCAGCTCAGAAAAATGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTGGGCAACAGCAATATTGTTAGAATTCAGCTCAGAAAAATGAG  296

seq1  GAAGACACACTGATAGTATCTAGTGGGGGCACTCATACCAGAGCCGAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACACTGATAGTATCTAGTGGGGGCACTCATACCAGAGCCGAGAT  346

seq1  CACCCCTTGAAGCTGTCCAGGCATATGTCTCATTCCCTGTCAGGCCTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTGAAGCTGTCCAGGCATATGTCTCATTCCCTGTCAGGCCTCCT  396

seq1  TCGGAAGGGTAAGCACATCCAAGACAAAGCTCCTGTCTTCCTTTCTGCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGGGTAAGCACATCCAAGACAAAGCTCCTGTCTTCCTTTCTGCCC  446

seq1  GGTAGTAGCAGCCAATAGAGTGGAGAGAAACAGGGCAACTTGGCTGCGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGCAGCCAATAGAGTGGAGAGAAACAGGGCAACTTGGCTGCGAA  496

seq1  GACGGATTCTCCAGCCACTCTCCCTAGAAGATCTGAGGAAAGCCATCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGATTCTCCAGCCACTCTCCCTAGAAGATCTGAGGAAAGCCATCACT  546

seq1  GTGAATAAAGAACTCAAAGTCAGATCCTGTAGCTAATGAACAAGTGGGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAAGAACTCAAAGTCAGATCCTGTAGCTAATGAACAAGTGGGTG  596

seq1  ACTGACAGCAGAACACCGGTTTAAAGAGAAGAAAATATCAATCTACAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGCAGAACACCGGTTTAAAGAGAAGAAAATATCAATCTACAGAG  646

seq1  ATAAGTGGGTTTTTATTTGGTTATCTGCTTTATTCAAGCAAATTAAGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGGTTTTTATTTGGTTATCTGCTTTATTCAAGCAAATTAAGATT  696

seq1  GGCTATATTAGATCCTTTAACATAGCCAATACTTAATAGACAAAAGTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATTAGATCCTTTAACATAGCCAATACTTAATAGACAAAAGTGAA  746

seq1  TAGCCAACCGAATTATAAAAACGGGCCCAACTGGAAAGAGGAAGAGTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACCGAATTATAAAAACGGGCCCAACTGGAAAGAGGAAGAGTAGT  796

seq1  CTGAAGAGTTGGGAGCAAAGATTTTCACAGAAGCTTTTGGAGGTCAAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGTTGGGAGCAAAGATTTTCACAGAAGCTTTTGGAGGTCAAGAA  846

seq1  TCATGGAGAACAGATCGAGACAGCTCTAACAGTGAGTTCTTGGGTGTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGAACAGATCGAGACAGCTCTAACAGTGAGTTCTTGGGTGTTTT  896

seq1  AGAGGAAACAAATTTAAAAAAAAAAGTTCTTAGAACTAAAGTCAGGCAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACAAATTTAAAAAAAAAAGTTCTTAGAACTAAAGTCAGGCAAC  946

seq1  ATTCCAAAAGTTAAAAATGTTTGACAACAGCCAAATAACTCCAAAGAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAAAGTTAAAAATGTTTGACAACAGCCAAATAACTCCAAAGAGAG  996

seq1  GGAAGTGCCTCAGCAGGGGGTGGAGGGGCAACCATCCAAGAAAAGAAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCCTCAGCAGGGGGTGGAGGGGCAACCATCCAAGAAAAGAAAAG  1046

seq1  AAAATTCACCTGTCTACAAAGGAAATCAGGTTTTTACGTGAACCACTGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCACCTGTCTACAAAGGAAATCAGGTTTTTACGTGAACCACTGCA  1096

seq1  GTAGCTACATGAAAGATAAAGTTTTACTGGACGAAAACTACTTCACGTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTACATGAAAGATAAAGTTTTACTGGACGAAAACTACTTCACGTCT  1146

seq1  AGAATTC  1154
      |||||||
seq2  AGAATTC  1153