BAC Information

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BAC

Clone NameB6Ng01-170N06
Chromosome14 (Build37)4 (Build37)
Map Location 96,168,665 - 96,169,305151,006,678 - 151,007,578
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170N06.bB6Ng01-170N06.g
ACCDH961443DH961444
length796898
definitionDH961443|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N06, 5' end.DH961444|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,168,665 - 96,169,305)(151,006,678 - 151,007,578)
sequence
gaattcagaggacaaccacttgagtcctggggatcagactcaggccagtc
ggccttggcagcaggagcaagtgagccatctcacgcgttgactttatttg
ttgtccgtggatttctttcttacctgtgtgaggagtgggaggggcctttc
tccccctcctgaaaagaaaaaaataaagttacctatatatgaacaaattt
ttaacttggaggaggtacatgaacttcctgaaattcgatattgtttaaaa
attagtgttaggattgactatgcccttgtctcataatatcatagtgtcac
ttgttctagcattttaggacatctgtgtggttaatgaaactggaaaacaa
tctgcaaatttattgtgagactctactttccttttcaacaatagcattgt
tcaatatgaacctagccttatatggacataaattaaaagcatcatagtgc
acttataagccttaggtgtaatcacagcagaaacactgaaacaaacatac
aatataaagatttagggatgaagggatggcttagcaaactgtgtctcatc
aattgatttttaaattttattcttgtttataataccactatattgtttct
cctttccctttcctctcttcatatatctttatttgatgttttaaaaatac
acaaactctttttgatttccctacacacacacacacacacacacacacac
acaccagttacaaacatgtaatgtttttcattatactatatatatatata
tatatatatatatatatatatatatatataaatatagtctactctg
gaattcaccactgggtaaatagtgcaggccgagccaaggagacctagctc
ccaactgcctttgcctacattgagcctcttaggacatggagcactgccca
aagccacagtgttcctctgttagtgtcctgtgcatggctatgctgtctct
gagaaggcaggattgaatccttgccccgctcccgctcccccctgactggt
ctggagactcccctccaatcttaggggtcacagggcacagctccaatgtc
agctcattccgtgcacaggtatcaggatctgcaaatgtgtctgacacagc
tgcccttgccactttcctggtctcgctgataggagatggccacttgaagc
tgatctttcaacaaggacgtccccaagtacgtctgaagccttcacagaag
ggcagctacttcaagtcctaaatctcttctttgtcaaggaaaactagaac
aagccacctggcgatataaacactggattttgtgcacagtgacaagagct
ctgcagccagggaggccggggacatggatagatggcacttgagcaaatct
cctgctgggctgacacctcactatcacaaaacaagtggaggctctggact
taacaagggctttgctatctaatcctcatgatctgtcctggagagcagca
ataagaaacctagggagcagagaaaagaagctgcagagagatctgagaca
ggaggcctctctggagacaccccccactggaaaaaatgatgctcctagca
tcatttttgtccccatgacccctatcctagggcatggagtggaaattaaa
aaggatcctttgacatagggtgggtgctacatatccatagacatcaaatg
gagccagcaccttctctcctggagtcaagggggaggcgtgttagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96168665_96169305
seq2: B6Ng01-170N06.b_201_841

seq1  CTCCTGAAAGGAAAATAATAAAGTTACCTATATATGAACAAATTTTTAAC  50
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAAAGAAAAAAATAAAGTTACCTATATATGAACAAATTTTTAAC  50

seq1  TTGTACTAAGGTACATGAACTTCCTGAAATTCTATATTGTTTAAAAATTA  100
      ||| |   |||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGA-GGAGGTACATGAACTTCCTGAAATTCGATATTGTTTAAAAATTA  99

seq1  GTGTTAGGATTGACTATGCCCTTGTCTCATAATATCATAGTGTCACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGATTGACTATGCCCTTGTCTCATAATATCATAGTGTCACTTGT  149

seq1  TCTAGCATTTTAGGACATCTGTGTGGTTAATGAAACTGGAAAACAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTTTAGGACATCTGTGTGGTTAATGAAACTGGAAAACAATCTG  199

seq1  CAAATTTATTGTGAGACTCTACTTTCCTTTTCAACAATAGCATTGTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTATTGTGAGACTCTACTTTCCTTTTCAACAATAGCATTGTTCAA  249

seq1  TATGAACCTAGCCTTATATGGACATAAATTAAAAGCATCATAGTGCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACCTAGCCTTATATGGACATAAATTAAAAGCATCATAGTGCACTT  299

seq1  ATAAGCCTTAGGTGTAATCACAGCAGAAACACTGAAACAAACATACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTTAGGTGTAATCACAGCAGAAACACTGAAACAAACATACAATA  349

seq1  TAAAGATTTAGGGATGAAGGGATGGCTTAGCAAACTGTGTCTCATCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTTAGGGATGAAGGGATGGCTTAGCAAACTGTGTCTCATCAATT  399

seq1  GATTTTTAAATTTTATTCTTGTTTATAATACCACTATATTGTTTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAATTTTATTCTTGTTTATAATACCACTATATTGTTTCTCCTT  449

seq1  TCCCTTTCCTCTCTTCATATATCTTTATTTGATGTTTTAAAAATACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCTCTCTTCATATATCTTTATTTGATGTTTTAAAAATACACAA  499

seq1  ACTC-TTTTGATTTCCCTACACACACACACACACACACACACACACACAC  549
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTTGATTTCCCTACACACACACACACACACACACACACACACAC  549

seq1  CAGTTACAAACATGTAATG-TTTTCATTATACATATATATATATATATAT  598
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  CAGTTACAAACATGTAATGTTTTTCATTATAC-TATATATATATATATAT  598

seq1  ATATATATATATATATATATATATATAATTATAGTCTACTCTG  641
      |||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATATATATATATATATATATATATAAATATAGTCTACTCTG  641

seq1: chr4_151006678_151007578
seq2: B6Ng01-170N06.g_69_965

seq1  GAATTCACCACTGGTTAAATAGTGCAGGCCGAGCCAAGGAGACCTAGCTC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACTGGGTAAATAGTGCAGGCCGAGCCAAGGAGACCTAGCTC  50

seq1  CCAACTGCCTTTGCCTACATTGAGCCTCTTAGGACATGGAGCACTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCCTTTGCCTACATTGAGCCTCTTAGGACATGGAGCACTGCCCA  100

seq1  AAGCCACAGTGTTCCTCTGTTAGTGTCCTGGGCATGGCTATGCTGTCTCT  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCCACAGTGTTCCTCTGTTAGTGTCCTGTGCATGGCTATGCTGTCTCT  150

seq1  GAGAAGGCAGTATTGAATCCTTGCCCCGCTCCCGCTCCCCCCTGACTGGT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGGATTGAATCCTTGCCCCGCTCCCGCTCCCCCCTGACTGGT  200

seq1  CTGGAGACTCCCCTCCAATCTTAGGGGTCACAGGGCACAGCTCCGATGTC  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGAGACTCCCCTCCAATCTTAGGGGTCACAGGGCACAGCTCCAATGTC  250

seq1  AGCTCATTCCGTGCACAGGTATCAGGATCTGCAAATGTGTCTGACACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTCCGTGCACAGGTATCAGGATCTGCAAATGTGTCTGACACAGC  300

seq1  TGCCCTTGCCACTTTCCTGGTCTCGCTGATAGGAGATGGCCACTTGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGCCACTTTCCTGGTCTCGCTGATAGGAGATGGCCACTTGAAGC  350

seq1  TGATCTTTCAACAAGGACGTCCCCAAGTACGTCTGAAGCCTTCACAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCAACAAGGACGTCCCCAAGTACGTCTGAAGCCTTCACAGAAG  400

seq1  GGCAGCTACTTCAAGTCCTAAATCTCTTCTTTGTCAAGGAAAACTAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTACTTCAAGTCCTAAATCTCTTCTTTGTCAAGGAAAACTAGAAC  450

seq1  AAGCCACCTGGCGATAGAAACACTGGATTTTGTGCAGAGTGACAAGAGCT  500
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AAGCCACCTGGCGATATAAACACTGGATTTTGTGCACAGTGACAAGAGCT  500

seq1  CTGCAGCCAGGGAGGCCGGGGACATGGCTAGATGGCACTTGAGCAGATCT  550
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  CTGCAGCCAGGGAGGCCGGGGACATGGATAGATGGCACTTGAGCAAATCT  550

seq1  CCTGCTGGGCTGACACCTCACTATCGCAGAACAAGTGGAGGCTCTGGACT  600
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  CCTGCTGGGCTGACACCTCACTATCACAAAACAAGTGGAGGCTCTGGACT  600

seq1  TAACAAGGGCTTTGCTATCTAATCCTCATGATCTGTCCTGGAGAGCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGGCTTTGCTATCTAATCCTCATGATCTGTCCTGGAGAGCAGCA  650

seq1  ATAAGAAACCTAGGGAGCAGAGAAAAGAAGCTGCAGAGAGATCTGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAACCTAGGGAGCAGAGAAAAGAAGCTGCAGAGAGATCTGAGACA  700

seq1  GGAGGCCTCTCTGGAGACACAGACCCACTGGAAAAAAATGATGCTCCTAG  750
      ||||||||||||||||||||   |||||||| ||||||||||||||||||
seq2  GGAGGCCTCTCTGGAGACAC-CCCCCACTGG-AAAAAATGATGCTCCTAG  748

seq1  CATCATTTTTGTGCCCCAGGACCCCTAACCAAAGGGCATGGAGTGG-AAG  799
      |||||||||||| ||||| |||||||| ||  |||||||||||||| || 
seq2  CATCATTTTTGT-CCCCATGACCCCTATCC-TAGGGCATGGAGTGGAAAT  796

seq1  TAAGAAGGATACAGTGACAGAGGGTGGGTGCTACATAGCAATAGCCTTCA  849
      ||| |||||| |  ||||| ||||||||||||||||| | |||| | |||
seq2  TAAAAAGGATCCTTTGACATAGGGTGGGTGCTACATATCCATAGACATCA  846

seq1  AATGGAGCCAGCAACATTCTCTCCTGGAGTCAAGGGGGAGGCGTGTAAGT  899
      |||||||||||| || |||||||||||||||||||||||||||||| |||
seq2  AATGGAGCCAGC-ACCTTCTCTCCTGGAGTCAAGGGGGAGGCGTGTTAGT  895

seq1  CT  901
      ||
seq2  CT  897