BAC Information

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BAC

Clone NameB6Ng01-173M18
Chromosome4 (Build37)
Map Location 145,539,879 - 145,659,720
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173M18.bB6Ng01-173M18.g
ACCGA002049GA002050
length1,0951,212
definitionB6Ng01-173M18.b B6Ng01-173M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,539,879 - 145,540,625)(145,658,530 - 145,659,720)
sequence
gaattctctgatgaatcctcaaactgaattttttagtaaaggatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcagatggccattttcagtaaaggatttgtcacatcgactacatttgt
aaggtttctcacctgtatgatttctctgatgaattctcagatggccattt
tcagtaaaggatttgtcacattgactacatttgtaaggtttctctcctgt
atgaattctctgatgaatattaagatgggatttttgggtaaagcatttgt
cacattcactgcatttgtaaggtttatctcctgtatgaatcctctgatga
attctcagattgcctttttcagtaaagcatttctcacatacaatgcattt
gtaaggtttctctcctgtatgaattctctgatgaatattaagatgagatt
tttgggtaaagcatttgtcacattcactacatttgtaaggtttctctcct
gtatgaattctctgatgaatattaagatgaaatttgtgggtaaagcattt
gtcacattcactacatttataaattttctcttctgcatgaattccctgat
ggatactaagatcgatctgatgggtaaagcatttgtcacttttactactt
ctgtaatgtttcttttcatgataaattctctgctgactttgaagtttgtc
tctctgggtaagatatttgtcaaatttactacatttgtaagggttcactc
cagtattatttcgtttcaccatgactttatgtttagaaataaaagccttc
tcagattctgcatttccgttgtgttttttcttctgcatgtggattccctg
attgagactaacggtagaaaacaagttaaactgtttacagagtcattgta
tttgcaaacttctttagtgttctgggcttaagtcttttttggttcgaaat
tgaagagcatcagaggtatgatttagtttttgttaaggtgtacattgggg
gcttcaagtatcaccattgctaaagttgtccaatttagaagaacttcttc
tgatattcatgtgttcatgtacatgtactgcctgtcctggatcca
gaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaaca
tcagtctgacaaatcaacagatatttcaaacagtagagcaacattataaa
tgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattcac
tggagaattcttccaaaagggaaacttttcaaatacattgacggtttgaa
tcctttattttggccaatctcttagaatgtaacagataatttatacaggc
aagaatcttaacaaatataatatatgctgaaatatctttgacttcatttc
agtgcagaaaaaatatgtaaaaaaattttttatgggaaaaatagttctcc
tggggaaatgtggcatatgttttacacgggtaatattcttttcaacagtc
agtgctctaaactagagaattattatgaatctgaaaacttttgaaaacct
tcatgcaatcttcaaatctaatgtcaactattatgctggcagtaactctg
aatatatgataatgaagaaacattttcattaaacttttacttgttcaccc
tcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgatgt
tgtgcaacaattcatggagatagaaatgatccattccagaaggaaactta
aagagtgtactatcgccttcaaaatgtctaataaaactggcagcattttg
tatatttaattcaaatgaagaatttgacacaaattatacttgatagagta
tttgacaaactgagccaccaagaatgcatgttctttattcctataatacc
acctacagatgtgaagtgtgcttttgaagtatccagtattcatttattct
ttatcacggtcaattgtgacaaaatggatttattggtttcacgtttcagg
atagtgactgaactatgaagtcccttaatgctctggtcaacatctccttc
cttcatgcctgtaaaataaagctgaatatttttaaccaggtgacttgctg
tttttcgcttgccactgattaataagaatggaataaatggtgccatcaat
cggctggactattctcataaggaatttgctgaagtcatgaaatatttctc
gtaaaaacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145539879_145540625
seq2: B6Ng01-173M18.b_394_1140

seq1  GAATTCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCAT  50

seq1  TTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGA  100

seq1  TTTTTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTC  150

seq1  CTGTATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCAT  200

seq1  TTGTCACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTG  250

seq1  ATGGATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTAC  300

seq1  TTCTGTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTG  350

seq1  TCTCTCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCAC  400

seq1  TCCAGTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCT  450

seq1  TCTCAGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCC  500

seq1  TGATTGAGACTAACGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATT  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGATTGAGACTAACGGTAGAAAAC-AAGTTAAACTGTTTACAGAGTCATT  549

seq1  GTATTTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCG  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTATTTGCAAACTTCTTTAGTGTT-CTGGGCTTAAGTCTTTTTTGGTTCG  598

seq1  AAAATTGAAGAGCATCAGAGGTATGA-TTAGTTTT--GTAAGGTGTACAT  647
       ||||||||||||||||||||||||| ||||||||   ||||||||||||
seq2  -AAATTGAAGAGCATCAGAGGTATGATTTAGTTTTTGTTAAGGTGTACAT  647

seq1  TGGGGGGCTTCAAGTATCA-CATTGCTAAGTTTGTCCCATTTAGAAG-AC  695
      | ||||||||||||||||| |||||||||  |||||| ||||||||| ||
seq2  T-GGGGGCTTCAAGTATCACCATTGCTAAAGTTGTCCAATTTAGAAGAAC  696

seq1  TTCTCTTGAATATTCATGTGTTCATGGACAATGTACTGGCTGT-CTTGAT  744
      ||||  || ||||||||||||||||| || |||||||| |||| || |||
seq2  TTCTTCTG-ATATTCATGTGTTCATGTAC-ATGTACTGCCTGTCCTGGAT  744

seq1  CCA  747
      |||
seq2  CCA  747

seq1: chr4_145658530_145659720
seq2: B6Ng01-173M18.g_69_1280 (reverse)

seq1  ACAGG--TTTAC-AGAAAATATTCATGACTTCAGCAAATACTTTATGAGA  47
      |||||  ||||| |||||   |||||||||||||||||| | ||||||| 
seq2  ACAGGTTTTTACGAGAAATATTTCATGACTTCAGCAAATTCCTTATGAG-  49

seq1  AATAGTTCCAG-CGA-TGAT-GCAACATTTATTC--ATCTAATT-ATCAG  91
      ||||| ||||| ||| |||| ||| |||||||||   ||| ||| |||||
seq2  AATAG-TCCAGCCGATTGATGGCACCATTTATTCCATTCTTATTAATCAG  98

seq1  T-GCAAACTGAAAACAGCCAAGTCAACCTTGTT-AAAATATTCAGCTTTA  139
      | |||| |  ||||||| |||||| |||| ||| ||||||||||||||||
seq2  TGGCAAGCGAAAAACAG-CAAGTC-ACCTGGTTAAAAATATTCAGCTTTA  146

seq1  -TTTACAGGGCAATGAGGAAGGAGATGTTGA-CAGAGCA-TAAGGGAC-T  185
       |||||| ||||   |||||||||||||||| ||||||| |||||||| |
seq2  TTTTACA-GGCATGAAGGAAGGAGATGTTGACCAGAGCATTAAGGGACTT  195

seq1  CATAG-TCAGTCACTATCCTGAAACGTGAAACCAATAAATC--ATTTGTC  232
      ||||| |||||||||||||||||||||||||||||||||||   ||||||
seq2  CATAGTTCAGTCACTATCCTGAAACGTGAAACCAATAAATCCATTTTGTC  245

seq1  AC-ATTGA-CGTGAT-AAGAAT-AATGAATACTGGATACT--CAAAGCAC  276
      || ||||| |||||| |||||| |||||||||||||||||   |||||||
seq2  ACAATTGACCGTGATAAAGAATAAATGAATACTGGATACTTCAAAAGCAC  295

seq1  ACTTCACATCTGTAGGT-GTATTATAGG-ATTAAGAACATGCATTCTTGG  324
      ||||||||||||||||| |||||||||| || ||||||||||||||||||
seq2  ACTTCACATCTGTAGGTGGTATTATAGGAATAAAGAACATGCATTCTTGG  345

seq1  TGGCTCAGTTTGTCAAATACTCTATCAAGTATAATTTGTGTCAATTTCTT  374
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGCTCAGTTTGTCAAATACTCTATCAAGTATAATTTGTGTCAAATTCTT  395

seq1  CATTTGAATTAAATATACAAAATGCTGCCAGTTTTATTAGACATTTTGAA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATTAAATATACAAAATGCTGCCAGTTTTATTAGACATTTTGAA  445

seq1  GGCGATAGTACACTCTTTAAGTTTCCTTCTGGAATGGATCATTTCTATCT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATAGTACACTCTTTAAGTTTCCTTCTGGAATGGATCATTTCTATCT  495

seq1  CCATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACCTGACTT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACCTGACTT  545

seq1  CATCATATAATATTTGAGGGTGAACAAGTAAAAGTTTAATGAAAATGTTT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATAATATTTGAGGGTGAACAAGTAAAAGTTTAATGAAAATGTTT  595

seq1  CTTCATTATCATATATTCAGAGTTACTGCCAGCATAATAGTTGACATTAG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTATCATATATTCAGAGTTACTGCCAGCATAATAGTTGACATTAG  645

seq1  ATTTGAAGATTGCATGAAGGTTTTCAAAAGTTTTCAGATTCATAATAATT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGATTGCATGAAGGTTTTCAAAAGTTTTCAGATTCATAATAATT  695

seq1  CTCTAGTTTAGAGCACTGACTGTTGAAAAGAATATTACCCGTGTAAAACA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTTAGAGCACTGACTGTTGAAAAGAATATTACCCGTGTAAAACA  745

seq1  TATGCCACATTTCCCCAGGAGAACTATTTTTCCCATAAAAAATTTTTTTA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACATTTCCCCAGGAGAACTATTTTTCCCATAAAAAATTTTTTTA  795

seq1  CATATTTTTTCTGCACTGAAATGAAGTCAAAGATATTTCAGCATATATTA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTTCTGCACTGAAATGAAGTCAAAGATATTTCAGCATATATTA  845

seq1  TATTTGTTAAGATTCTTGCCTGTATAAATTATCTGTTACATTCTAAGAGA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTAAGATTCTTGCCTGTATAAATTATCTGTTACATTCTAAGAGA  895

seq1  TTGGCCAAAATAAAGGATTCAAACCGTCAATGTATTTGAAAAGTTTCCCT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAAAATAAAGGATTCAAACCGTCAATGTATTTGAAAAGTTTCCCT  945

seq1  TTTGGAAGAATTCTCCAGTGAATTTTAAGATGATATTTCTTGTTAAAGGA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGAATTCTCCAGTGAATTTTAAGATGATATTTCTTGTTAAAGGA  995

seq1  TTATCTCATTCATTTCATTTATAATGTTGCTCTACTGTTTGAAATATCTG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCATTCATTTCATTTATAATGTTGCTCTACTGTTTGAAATATCTG  1045

seq1  TTGATTTGTCAGACTGATGTTGTGGGTACTGCATTTATCACATACAAAAT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGTCAGACTGATGTTGTGGGTACTGCATTTATCACATACAAAAT  1095

seq1  ACTTGTAAGGTTTTTTTAAATGTATAAATTATCTGATTAATTCTCAGTCT  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAAGGTTTTTTTAAATGTATAAATTATCTGATTAATTCTCAGTCT  1145

seq1  GCCTTTATTAGTAAAGCATTTATCACATTCACTGCATTTTTGTAAGTTTT  1174
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATTAGTAAAGCATTTATCACATTCACTGCATTTTTGTAAGTTTT  1195

seq1  CTCTACTGTATGAATTC  1191
      |||||||||||||||||
seq2  CTCTACTGTATGAATTC  1212