BAC Information

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BAC

Clone NameB6Ng01-174N16
Chromosome4 (Build37)
Map Location 16,796,336 - 16,926,009
singlet/doubletdoublet
Overlap geneLOC100040154
Upstream geneCalb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC667212, LOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174N16.bB6Ng01-174N16.g
ACCGA002818GA002819
length1,1481,060
definitionB6Ng01-174N16.b B6Ng01-174N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,796,336 - 16,797,464)(16,924,957 - 16,926,009)
sequence
acatttaagaaattatttggaaaaaagacctgaaaacacttcacttgaag
ttcaaaaagtgagaaaagcaacagaaaagtaggggtaacagggatgtaag
tgaaatagctactaaggtaggccaataaagcctgattctagcagaggact
atagaaacaagtttgtggtactttatacgacctttgagaatgaaattccc
tatcatttctaatccatactctatatagataatccaatgaaaaataattt
ccatcatgttgatgtcattgtactgacattggaaattgtagatgatttct
ctcttagatcagatttattacatttaccattgtgctttttatactgtttc
ttgtatctttcttctttctgtgtcaatttcattctacaagaaagatgtct
tcacataagttgcaccctatgtcttgtcaattttctcctcttaacctgac
ctgtttttattactttcattcctatatataagatatgtaattttgatcta
cttctgttctcatttctaaattgtttgctgctattttttcagacctagaa
aattcttggcactgaccaaacctggaaggtgaaaaagcaatggatgtgag
aagcaatcttgatagtctaaatgtaatagctttttaaaataattttttac
tttaatttggtttatatggatggatgatctaaataaagatatcatataag
caacattgatgtaaaattatgtactttggtatatattaccaatgtaagag
aacaaatcaacataacagattttcaagtgtgcttaccttttctttgtgat
ttattaattaaataaaacatttctttaaaaggaaataaatactttttatt
gaaataatactgtggttgaaatttataaaaatactgcatcagatcttatt
tcataacatgtctagtggttaaacttaataaaatagaacttgctgtttat
ttcctttcctaaaagtataagtttgtttgcaaaattttcacaagatattt
agaaactaaatgaaattaacaagcttagttgaggaagggatgaagtatta
aattctctaggacattggtcacttggaactggggtaccattgcaatttcc
atttatcttttatcttttgctttacttaggatttcctaggataatttc

gaattccttttgcattggtcttttattgctaagcatgggacctaattaga
gtttcttgttatgataaaactcctttgtagacaactaaatttttgtttgt
aaaacatgatcagtaagagacaactttggcttttcagttagtggtaaaga
tatatgtccactttactcagttaaatgtcccaacattacgacaacatttt
tttttctaatccagtccaggttggaaagaagtctccttagtgtcagatta
agccccatctcttaacaatatggacagatgagtgtgccatggccatgaga
tatttcataatgcagaaggaatttgttgttactttttggattgtactctt
ctaggctggaccgaattcataagcagattgaagtaagacctgttctttac
agatggtattttaatagatactggagtttgtctgtattatatctgtgccc
cttcttttaagaacaatgttacattatgttcctttggaaaaactgtgatt
tgacaactgatttcaataaaaatatttgcctctcttaaaaaaaataattc
ctcatctgatgaatactggtgcaggtcatatgactgaagcctcagtataa
gtgaggtcatgtgaatgtcagttgtactgtgttttggggttttattagat
attttctttatttacatttcaaatgttattccccattcctagtttcccct
tagaaaaccctctatccctctcccctcttcccctgctcaccaacccaccc
actccctcttcctggccctgcaagttccctatactggggcatacaacctt
cacaggaccaaggggctttcctccactgatgaccaactaggcaatcaatc
tgctatatatgcagctagaaccatgagtcccaccatgtgttttcttttga
aatggtgggtttagttcccagggaagctctggaaatactggttagttcat
attgttgtcctcctagggtgattacaaaccccttcagctcctttgggttc
tttctctagcttctcttgggtacctgggctctggctcaatgggattggct
tgtgaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_16796336_16797464
seq2: B6Ng01-174N16.b_46_1193

seq1  ACATTTAAGAAATTATTTGGAAAAAAGACCTGAAGACACTTCACTTGAAG  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACATTTAAGAAATTATTTGGAAAAAAGACCTGAAAACACTTCACTTGAAG  50

seq1  TTCAAAAAGTGAGAAAAGCAACAGAAAAGTAGGGGTAACAGGGATGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAGTGAGAAAAGCAACAGAAAAGTAGGGGTAACAGGGATGTAAG  100

seq1  TGAAATAGCTACTAAGGTAGGCCAATAAAGCCTGATTCTAGCAGAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGCTACTAAGGTAGGCCAATAAAGCCTGATTCTAGCAGAGGACT  150

seq1  ATAGAAACAAGTTTGTGGTACTTTATACGACCTTTGAGAATGAAATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACAAGTTTGTGGTACTTTATACGACCTTTGAGAATGAAATTCCC  200

seq1  TATCATTTCTAATCCATACTCTATATAGATAATCCAATGAAAAATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTCTAATCCATACTCTATATAGATAATCCAATGAAAAATAATTT  250

seq1  CCATCATGTTGATGTCATTGTACTGACATTGGAAATTGTAGATGATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGTTGATGTCATTGTACTGACATTGGAAATTGTAGATGATTTCT  300

seq1  CTCTTAGATCAGATTTATTACATTTACCATTGTGCTTTTTATACTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGATCAGATTTATTACATTTACCATTGTGCTTTTTATACTGTTTC  350

seq1  TTGTATCTTTCTTCTTTCTGTGTCAATTTCATTCTACAAGAAAGATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTTTCTTCTTTCTGTGTCAATTTCATTCTACAAGAAAGATGTCT  400

seq1  TCACATAAGTTGCACCCTATGTCTTGTCAATTTTCTCCTCTTAACCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAGTTGCACCCTATGTCTTGTCAATTTTCTCCTCTTAACCTGAC  450

seq1  CTGTTTTTATTACTTTCATTCCTATATATAAGATATGTAATTTTGATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTATTACTTTCATTCCTATATATAAGATATGTAATTTTGATCTA  500

seq1  CTTCTGTTCTCATTTCTAAATTGTTTGCTGCTATTTTTTCAGACCTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCTCATTTCTAAATTGTTTGCTGCTATTTTTTCAGACCTAGAA  550

seq1  AATTCTTGGCACTGACCAAACCTGGAAGGTGAAAAAGCAATGGATGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGCACTGACCAAACCTGGAAGGTGAAAAAGCAATGGATGTGAG  600

seq1  AAGCAATCTTGATAGTCTAAATGTAATAGCTTTTTAAAATAATTTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTTGATAGTCTAAATGTAATAGCTTTTTAAAATAATTTTTTAC  650

seq1  TTTAATTTGGTTTATATGGATGGATGATCTAAATAAAGATATCATATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGGTTTATATGGATGGATGATCTAAATAAAGATATCATATAAG  700

seq1  CAACATTGATGTAAAATTATGTACTTTGGTATATATTACCAATGTAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGATGTAAAATTATGTACTTTGGTATATATTACCAATGTAAGAG  750

seq1  AACAAATCAACATAACAGATTTTCAAGTGTGCTTACCTTTTCTTTGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAACATAACAGATTTTCAAGTGTGCTTACCTTTTCTTTGTGAT  800

seq1  TTATTAATTAAATAAAACATTTCTTTAAAAGGAAATAAATAC-TTTTATT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATTAATTAAATAAAACATTTCTTTAAAAGGAAATAAATACTTTTTATT  850

seq1  GAAATAATACTGTGGTTGAAATTTATAAAAATACTGCATCAGATCTTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATACTGTGGTTGAAATTTATAAAAATACTGCATCAGATCTTATT  900

seq1  TCATAACATGTCTAGTGG-TAAACTTAATAAAATAGAACTTGCTGTTTAT  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATAACATGTCTAGTGGTTAAACTTAATAAAATAGAACTTGCTGTTTAT  950

seq1  TTCCTTTCCT-AAAGTATAAG-TTGTTTGCAAAATTTTCACAAGATA-TT  995
      |||||||||| |||||||||| ||||||||||||||||||||||||| ||
seq2  TTCCTTTCCTAAAAGTATAAGTTTGTTTGCAAAATTTTCACAAGATATTT  1000

seq1  AGAAACTAAATGAAA-TAACAAGC-TAG-TGAG--AAGGATGAAGTA-TA  1039
      ||||||||||||||| |||||||| ||| ||||  | |||||||||| ||
seq2  AGAAACTAAATGAAATTAACAAGCTTAGTTGAGGAAGGGATGAAGTATTA  1050

seq1  AAT--TCTAAGACCATGGTCACT--GGACT-GGGTACCA-TGCAA-TTCC  1082
      |||  |||| |||  ||||||||  | ||| |||||||| ||||| ||||
seq2  AATTCTCTAGGACATTGGTCACTTGGAACTGGGGTACCATTGCAATTTCC  1100

seq1  ATTTATC-TTTATCTTTTGGTTTACTATAGGATTT-CTAGAATAATTTC  1129
      ||||||| ||||||||||| |||||| |||||||| |||| ||||||||
seq2  ATTTATCTTTTATCTTTTGCTTTACT-TAGGATTTCCTAGGATAATTTC  1148


seq1: chr4_16924957_16926009
seq2: B6Ng01-174N16.g_71_1130 (reverse)

seq1  GATGTTCAC-AGCCA--TCCATTG-GACAGAGCACAGGGTACCCAAAGAA  46
      ||||||||| |||||   |||||| | |||||| || |||||||||   |
seq2  GATGTTCACAAGCCAATCCCATTGAGCCAGAGCCCA-GGTACCCAA--GA  47

seq1  GAAGCTAGAGAAAGAACCC-AAGAAGCTGAAGGGGTTTGTAATCA-CCTA  94
      ||||||||||||||||||| ||| ||||||||||||||||||||| ||||
seq2  GAAGCTAGAGAAAGAACCCAAAGGAGCTGAAGGGGTTTGTAATCACCCTA  97

seq1  GGAGGAACAACAATATGAACTAACCAGTATTTCCAGAGC-TCCCT-GGAA  142
      ||||| ||||||||||||||||||||||||||||||||| ||||| ||||
seq2  GGAGG-ACAACAATATGAACTAACCAGTATTTCCAGAGCTTCCCTGGGAA  146

seq1  CTAAA-CCACCATT--CAAAGAAAACACATGGTGGGACTCATGGTTCTAG  189
      ||||| ||||||||   |||||||||||||||||||||||||||||||||
seq2  CTAAACCCACCATTTCAAAAGAAAACACATGGTGGGACTCATGGTTCTAG  196

seq1  CTGCATATATAGCAGA-TGATTGCCTAGTTGGTCATCAGTGGGAGGAAAG  238
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CTGCATATATAGCAGATTGATTGCCTAGTTGGTCATCAGT-GGAGGAAAG  245

seq1  CCCCTTGGTCCTGTGAAGGTTGTATGCCCCAGTATAGGGAACTTGCAGGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGGTCCTGTGAAGGTTGTATGCCCCAGTATAGGGAACTTGCAGGG  295

seq1  CCAGGAAGAGGGAGTGGGTGGGTTGGTGAGCAGGGGAAGAGGGGAGAGGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGAGGGAGTGGGTGGGTTGGTGAGCAGGGGAAGAGGGGAGAGGG  345

seq1  ATAGAGGGTTTTCTAAGGGGAAACTAGGAATGGGGAATAACATTTGAAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGGTTTTCTAAGGGGAAACTAGGAATGGGGAATAACATTTGAAAT  395

seq1  GTAAATAAAGAAAATATCTAATAAAACCCCAAAACACAGTACAACTGACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAAGAAAATATCTAATAAAACCCCAAAACACAGTACAACTGACA  445

seq1  TTCACATGACCTCACTTATACTGAGGCTTCAGTCATATGACCTGCACCAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGACCTCACTTATACTGAGGCTTCAGTCATATGACCTGCACCAG  495

seq1  TATTCATCAGATGAGGAATTATTTTTTTTAAGAGAGGCAAATATTTTTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCAGATGAGGAATTATTTTTTTTAAGAGAGGCAAATATTTTTAT  545

seq1  TGAAATCAGTTGTCAAATCACAGTTTTTCCAAAGGAACATAATGTAACAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAGTTGTCAAATCACAGTTTTTCCAAAGGAACATAATGTAACAT  595

seq1  TGTTCTTAAAAGAAGGGGCACAGATATAATACAGACAAACTCCAGTATCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAAAAGAAGGGGCACAGATATAATACAGACAAACTCCAGTATCT  645

seq1  ATTAAAATACCATCTGTAAAGAACAGGTCTTACTTCAATCTGCTTATGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATACCATCTGTAAAGAACAGGTCTTACTTCAATCTGCTTATGAA  695

seq1  TTCGGTCCAGCCTAGAAGAGTACAATCCAAAAAGTAACAACAAATTCCTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTCCAGCCTAGAAGAGTACAATCCAAAAAGTAACAACAAATTCCTT  745

seq1  CTGCATTATGAAATATCTCATGGCCATGGCACACTCATCTGTCCATATTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTATGAAATATCTCATGGCCATGGCACACTCATCTGTCCATATTG  795

seq1  TTAAGAGATGGGGCTTAATCTGACACTAAGGAGACTTCTTTCCAACCTGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGATGGGGCTTAATCTGACACTAAGGAGACTTCTTTCCAACCTGG  845

seq1  ACTGGATTAGAAAAAAAAATGTTGTCGTAATGTTGGGACATTTAACTGAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTAGAAAAAAAAATGTTGTCGTAATGTTGGGACATTTAACTGAG  895

seq1  TAAAGTGGACATATATCTTTACCACTAACTGAAAAGCCAAAGTTGTCTCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGGACATATATCTTTACCACTAACTGAAAAGCCAAAGTTGTCTCT  945

seq1  TACTGATCATGTTTTACAAACAAAAATTTAGTTGTCTACAAAGGAGTCTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACTGATCATGTTTTACAAACAAAAATTTAGTTGTCTACAAAGGAGTTTT  995

seq1  ATCATAACAAGAAACTCTAATTAGGTCCCATGCTTAGCAATAAATGACCA  1038
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCATAACAAGAAACTCTAATTAGGTCCCATGCTTAGCAATAAAAGACCA  1045

seq1  ATGCAAAAGGAATTC  1053
      |||||||||||||||
seq2  ATGCAAAAGGAATTC  1060


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