MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-175B05
Chromosome	4 (Build37)
Map Location	109,312,857 - 109,436,835
singlet/doublet	doublet
Overlap gene	Cdkn2c, LOC100040307, Faf1
Upstream gene	Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik
Downstream gene	Dmrta2, Elavl4
Link	Open Mouse BAC browser

Click to get alignment info.

name	Zfyve9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230597 MGI:2652838
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040326 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040326
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	3110021N24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73133 MGI:1920383
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	Btf3l4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70533 MGI:1915312
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txndc12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66073 MGI:1913323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kti12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100087 MGI:1923547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab3b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69908 MGI:1917158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nrd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230598 MGI:1201386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Osbpl9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100273 MGI:1923784
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Calr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108802 MGI:2140435
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eps15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13858 MGI:104583
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666144 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666144
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 327 ESTs, 2 Proteins pseudo : _no_value

name	4922503N01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230603 MGI:2444350
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:29864 MGI:1352759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930522H14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67646 MGI:1914896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdkn2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12580 MGI:105388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040307 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040307
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Faf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14084 MGI:109419
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dmrta2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242620 MGI:2653629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elavl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15572 MGI:107427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Zfyve9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119508809 GeneID:230597 MGI:2652838
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, FYVE domain containing 9 transcript_id : NM_183300.2

name	3110021N24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252839 GeneID:73133 MGI:1920383
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : RIKEN cDNA 3110021N24 gene transcript_id : XM_897870.3

name	Btf3l4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892989 GeneID:70533 MGI:1915312
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : basic transcription factor 3-like 4 transcript_id : NM_027453.2

name	Txndc12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130370 GeneID:66073 MGI:1913323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin domain containing 12 (endoplasmic reticulum) transcript_id : NM_025334.3

name	Kti12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803069 GeneID:100087 MGI:1923547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KTI12 homolog, chromatin associated (S. cerevisiae) transcript_id : NM_029571.2

name	Rab3b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130330 GeneID:69908 MGI:1917158
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB3B, member RAS oncogene family transcript_id : NM_023537.5

name	Nrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31559917 GeneID:230598 MGI:1201386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nardilysin, N-arginine dibasic convertase, NRD convertase 1 transcript_id : NM_146150.2

name	Osbpl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27597099 GeneID:100273 MGI:1923784
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oxysterol binding protein-like 9 transcript_id : NM_173350.1

name	Osbpl9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385216 GeneID:100273 MGI:1923784
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oxysterol binding protein-like 9 transcript_id : NM_133885.2

name	Calr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803566 GeneID:108802 MGI:2140435
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calreticulin 4 transcript_id : NM_001033226.2

name	Eps15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375587 GeneID:13858 MGI:104583
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epidermal growth factor receptor pathway substrate 15 transcript_id : NM_007943.2

name	4922503N01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23510250 GeneID:230603 MGI:2444350
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4922503N01 gene transcript_id : NM_153392.1

name	Rnf11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892912 GeneID:29864 MGI:1352759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 11 transcript_id : NM_013876.3

name	4930522H14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367097 GeneID:67646 MGI:1914896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930522H14 gene transcript_id : NM_026291.2

name	Cdkn2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982862 GeneID:12580 MGI:105388
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) transcript_id : NM_007671.2

name	LOC100040307 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252844 GeneID:100040307
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100040307 transcript_id : XM_001475212.1

name	Faf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40789279 GeneID:14084 MGI:109419
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Fas-associated factor 1 transcript_id : NM_007983.2

name	Dmrta2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112821684 GeneID:242620 MGI:2653629
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : doublesex and mab-3 related transcription factor like family A2 transcript_id : NM_172296.2

name	Elavl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662763 GeneID:15572 MGI:107427
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) transcript_id : NM_001038698.1

name	Elavl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181304 GeneID:15572 MGI:107427
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) transcript_id : NM_010488.3

name	Zfyve9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119508810 GeneID:230597 MGI:2652838
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0046332 - SMAD binding [Evidence ISS] GO_process : GO:0017015 - regulation of transforming growth factor beta receptor signaling pathway [Evidence ISS] codon_start : 1 note : MAD, mothers against decapentaplegic homolog (Drosophila) interacting protein, receptor activation anchor product : zinc finger, FYVE domain containing 9 protein_id : NP_899123.2

name	3110021N24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82894472 GeneID:73133 MGI:1920383
definition	codon_start : 1 product : hypothetical protein LOC73133 protein_id : XP_902963.1

name	Btf3l4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789195 CCDS:CCDS18456.1 GeneID:70533 MGI:1915312
definition	codon_start : 1 note : novel protein similar to basic transcription factor 3 Btf3 product : basic transcription factor 3-like 4 protein_id : NP_081729.1

name	Txndc12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384700 CCDS:CCDS18457.1 GeneID:66073 MGI:1913323
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO:0019153 - protein-disulfide reductase (glutathione) activity [Evidence IEA] codon_start : 1 note : ortholog of endoplasmic reticulum thioredoxin superfamily member, 18 kDa TLP19 product : endoplasmic reticulum protein ERp19 protein_id : NP_079610.1

name	Kti12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270210 CCDS:CCDS18458.1 GeneID:100087 MGI:1923547
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : KTI12 homolog, chromatin associated protein_id : NP_083847.1

name	Rab3b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963723 CCDS:CCDS18459.1 GeneID:69908 MGI:1917158
definition	GO_component : GO:0031045 - dense core granule [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0017157 - regulation of exocytosis [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB3B, member RAS oncogene family protein_id : NP_076026.1

name	Nrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559918 CCDS:CCDS18460.1 GeneID:230598 MGI:1201386
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0016919 - nardilysin activity [Evidence IEA] [Evidence ISS]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006869 - lipid transport [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : nardilysin, N-arginine dibasic convertase, NRD convertase 1 protein_id : NP_666262.2

name	Osbpl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527100 GeneID:100273 MGI:1923784
definition	codon_start : 1 note : isoform a is encoded by transcript variant a product : oxysterol binding protein-like 9 isoform a protein_id : NP_598646.1

name	Osbpl9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27597100 GeneID:100273 MGI:1923784
definition	codon_start : 1 note : isoform b is encoded by transcript variant 2 product : oxysterol binding protein-like 9 isoform b protein_id : NP_775485.1

name	Calr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370292 CCDS:CCDS18461.1 GeneID:108802 MGI:2140435
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005529 - sugar binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : calreticulin 4 protein_id : NP_001028398.1

name	Eps15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679671 CCDS:CCDS18462.1 GeneID:13858 MGI:104583
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : epidermal growth factor pathway substrate 15 product : epidermal growth factor receptor pathway substrate 15 protein_id : NP_031969.1

name	4922503N01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510251 CCDS:CCDS18463.1 GeneID:230603 MGI:2444350
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC230603 protein_id : NP_700441.1

name	Rnf11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305435 CCDS:CCDS18464.1 GeneID:29864 MGI:1352759
definition	GO_component : GO:0000151 - ubiquitin ligase complex [Evidence IPI] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IPI] codon_start : 1 product : ring finger protein 11 protein_id : NP_038904.1

name	4930522H14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312856 CCDS:CCDS18465.1 GeneID:67646 MGI:1914896
definition	codon_start : 1 product : hypothetical protein LOC67646 protein_id : NP_080567.1

name	Cdkn2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680910 CCDS:CCDS18467.1 GeneID:12580 MGI:105388
definition	GO_function : GO:0004861 - cyclin-dependent protein kinase inhibitor activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 product : cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) protein_id : NP_031697.1

name	LOC100040307 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252845 GeneID:100040307
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475262.1

name	Faf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40789280 CCDS:CCDS18468.1 GeneID:14084 MGI:109419
definition	GO_component : GO:0031265 - CD95 death-inducing signaling complex [Evidence ISS]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence ISS]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0031072 - heat shock protein binding [Evidence ISS]; GO:0030191 - Hsp70/Hsc70 protein inhibitor activity [Evidence ISS]; GO:0051059 - NF-kappaB binding [Evidence ISS]; GO:0019901 - protein kinase binding [Evidence ISS]; GO:0008605 - protein kinase CK2 regulator activity [Evidence ISS] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0008219 - cell death [Evidence ISS]; GO:0007253 - cytoplasmic sequestering of NF-kappaB [Evidence ISS]; GO:0043065 - positive regulation of apoptosis [Evidence ISS]; GO:0031334 - positive regulation of protein complex assembly [Evidence ISS]; GO:0043161 - proteasomal ubiquitin-dependent protein catabolism [Evidence ISS]; GO:0030155 - regulation of cell adhesion [Evidence IMP]; GO:0042176 - regulation of protein catabolism [Evidence ISS] codon_start : 1 product : Fas-associated factor 1 protein_id : NP_032009.2

name	Dmrta2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112821685 CCDS:CCDS18469.1 GeneID:242620 MGI:2653629
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007548 - sex differentiation [Evidence IEA] codon_start : 1 note : doublesex- and mab-3-related transcription factor 5 product : doublesex and mab-3 related transcription factor like family A2 protein_id : NP_758500.2

name	Elavl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662764 CCDS:CCDS18470.1 GeneID:15572 MGI:107427
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; HU-antigen D; RNA-binding protein HUD3 product : ELAV-like 4 isoform b protein_id : NP_001033787.1

name	Elavl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662766 CCDS:CCDS18471.1 GeneID:15572 MGI:107427
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; HU-antigen D; RNA-binding protein HUD3 product : ELAV-like 4 isoform a protein_id : NP_034618.2

name	LOC100040326 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040326
definition	number : 1 pseudo : _no_value

name	LOC100040326 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040326
definition	number : 2 pseudo : _no_value

name	LOC666144 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252843 GeneID:666144
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 327 ESTs, 2 Proteins product : similar to orf pseudo : _no_value transcript_id : XR_032061.1

clone name	MSMg01-375C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383N08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-144C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453J10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-272H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079K06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-076B09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-519G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205M18
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-175B05.b	B6Ng01-175B05.g
ACC	GA002978	GA002979
length	939	1,114
definition	B6Ng01-175B05.b	B6Ng01-175B05.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(109,312,857 - 109,313,794)	(109,435,694 - 109,436,835)
sequence	gaattccttgggggtagatttctagtagaagagttgctgggtcaaaggtt aggtgcatgtttacagtgttgtcctggagccagctggctagggtggaggt tgcaacaaattgaacagaaatggtgagcgtgcagccctcttgaggggaag cggcagtggaaaattaaaggcggaagtattgttcctttggtcaccattta gggggatacagcccaccacagagaagcagagaagacaaggtggcgggtag gtggcttcccggcagggcaagtgtgcaactggaacactgtacctacaact caaagactatgaagcagagatcgggccaggaaatgggccaggctgtaaca cccaaggcctgcctcgagtgacctacttccttcagcccagctccacctcc tgaagggtccacagcttccacaaaacagtaccactccctgggaccaagtt aaagattgtgctggacacttcacattcaaaccgtgtgtcctagtgcgctt tctgttagctgcgataaacaccaagacccaaagcaactttgggaggagag agtttatttcattttacagattataggccgtcatctcgggaagccatggc aggagcttaaaatgggcaccacaccacagaagaaaactgcttcctggctt actcatctacctttcctctatagcccagacccacctgaccaccaggcacg acactgtccacggtgggctagccactcctatgtcaattcccgattgagaa ccccatgaacagccatgcccagagcccaatgagatgcggccaattcttca actgtggtttttctcttggcagtgtcaagttgatgactaaagcctactat gacaccgtaccccgttaatccgttaatgaagtcatgtgtagcaaaagttt tctttactggaagcattttaaactaataattcaatttct	gaattcaaataagaatattggtaacatggggttaacaaagataatctgtg ccattaaaatacactatgaaaaaaaaaatgagtgacttgcttaagtttag agttgtttatgacgttatctcatcaaaagaaaaacaaagggcacatattt ttttaaatgtgatcatttatatattagctacgtacattgtcataagaaaa catttacactgatagcatttaaaattacagtattgtagatgaacagcttt aaatttaaggaataactataaatataaaagaaagctacattagttagtat tacatgactacttagtaaaccagaattatattaacaaaactgtgaatata ttttgtttgaaaatacagttcagcttaaggtgcgtaattgtgatattgat tcatattcgatattcccttatttaattatatattttatgcaactctagaa atttataaaaataattaagtaaatagttcctttgaaagcgtattttatca ttttaattcactataatggcaatgtattttaaaagtatgtgttttactca caaatacgtaaataaatcacaaaccaaaagctaacagatgtgtgacttct aattagttataataatctctgcttcaatgccattagaatgagcctctctt ttcttttgaaaactaaaaaagctttcctttgaattttaaactgtcagggt gcttcaaagtcaatgtacaaaatctgctttgattaaaattttagacatct acagtgataactttatgaaaggaaaatattaaattataattatcctaaac agacacagtcttgtgaaactaaccctacattcatgttaaaccacaaagag ttgaatataatgaatttgattcatcctcggacacaaagcttcaccacagt aaactcagtcaactgttgctcttgcgcttatattcatggtgcttaaatag cgcactttaaaacaaaaaaactccattggctttcatacatccaccctccc aaaaatacgcactgaaaactcaatgatatgaaggcttcagctcttttctc cttcataccatcttatctatgcagtaatctgcgtctcttccctccaatgc tacagagcaagcga
quality values	Open. Hide. 58 36 32 33 62 62 62 62 62 62 62 62 62 49 62 62 62 39 24 62 62 62 62 47 62 62 59 62 62 62 62 62 59 62 51 59 46 50 59 54 38 34 59 56 62 62 59 54 62 59 59 59 62 62 62 62 62 62 62 62 62 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 59 59 62 59 54 54 59 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 49 54 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 42 54 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 54 62 62 62 54 62 62 62 62 54 54 62 62 62 62 62 62 62 62 54 56 62 62 62 62 62 62 62 62 62 62 54 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 54 58 58 58 58 58 54 58 54 58 58 58 58 58 58 54 54 58 58 49 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 49 52 58 41 58 58 41 58 48 58 54 54 58 47 58 54 58 58 54 54 58 58 58 58 52 54 54 58 58 41 46 51 58 58 49 58 43 58 58 58 58 53 58 58 58 58 51 58 49 58 58 50 46 58 47 58 58 58 49 51 48 58 45 40 58 58 53 50 54 58 58 51 58 58 58 51 53 58 58 40 53 50 49 44 46 58 51 47 58 58 52 51 49 58 58 50 52 58 54 58 51 49 54 49 58 41 43 58 41 50 47 58 53 52 54 54 41 52 51 58 58 58 38 49 49 50 51 32 49 52 51 50 43 58 43 47 32 54 39 54 51 39 51 54 49 54 49 38 45 39 51 34 35 41 54 46 52 49 41 51 45 34 44 38 54 53 53 52 42 52 37 54 35 39 30 35 42 51 47 42 53 54 41 53 53 45 54 46 47 40 46 42 42 33 40 54 51 37 54 54 37 52 37 39 47 46 32 27 29 25 51 51 46 32 32 32 36 31 52 36 32 34 38 19 34 52 31 49 40 39 34 34 21 42 52 34 29 52 31 37 37 26 26 26 43 30 29 38 26 30 29 35 31 32 31 33 42 37 31 38 31 31 43 31 35 40 42 51 51 51 31 30 30 31 31 24 46 21 21 31 34 29 46 29 32 27 31 36 36 42 31 37 27 32 30 23 32 15 47 42 34 36 42 31 38 34 38 33 38 36 31 24 27 33 30 22 21 30 31 46 46 31 33 26 26 18 30 37 32 38 32 24 38 15 33 32 37 20 33 18 31 32 19 25 39 20 20 30 33 31 31 29 47 47 31 24 42 48 48 29 25 31 47 26 16 31 31 25 31 13 32 21 34 27 35 44 48 29 10 43 21 31 31 25 41 21 37 35 15 18 14 6 7 19 43 28 6 6	Open. Hide. 62 49 59 59 62 44 30 62 62 62 62 62 62 62 59 59 56 29 38 49 29 56 56 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 54 59 62 54 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 54 62 62 49 54 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 54 49 49 49 62 59 59 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 48 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 48 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 54 58 58 58 58 58 58 54 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 54 58 58 58 58 54 52 58 58 58 58 58 58 58 52 54 58 58 58 52 58 52 58 58 58 58 58 49 58 53 58 47 58 51 58 58 58 58 51 58 48 58 58 58 58 34 58 58 58 58 58 58 54 58 58 51 49 58 40 58 53 58 58 58 51 53 51 58 58 47 50 58 49 58 51 47 54 37 51 50 41 58 52 51 58 46 58 53 58 50 58 51 50 58 47 32 58 58 58 41 49 34 51 51 53 42 53 47 39 49 50 37 51 58 50 54 53 53 49 58 58 42 53 50 58 58 50 42 50 58 58 54 52 42 42 54 54 54 54 54 37 41 51 54 50 42 54 42 54 54 49 51 46 35 49 36 44 39 54 39 49 52 49 27 41 32 27 49 42 37 52 45 45 53 53 31 54 53 40 40 40 37 47 37 54 32 42 53 40 54 54 42 38 53 37 47 37 42 54 37 42 52 37 47 26 54 54 53 43 53 51 32 34 31 45 32 31 42 53 32 37 53 31 42 19 46 32 34 32 32 34 34 53 52 33 37 34 45 53 40 31 52 37 52 49 34 31 31 30 31 31 51 31 31 31 31 32 31 32 37 43 26 31 31 42 30 30 47 31 43 31 29 34 31 26 37 24 31 26 42 30 26 42 29 30 43 51 38 33 31 31 33 31 47 32 31 32 36 31 19 22 31 26 21 34 23 31 32 46 31 31 42 29 37 37 46 41 32 42 28 25 32 27 25 31 24 13 10 12 21 21 32 31 38 25 48 32 26 31 24 31 31 25 33 36 36 32 33 19 16 26 25 23 24 20 32 32 31 32 25 15 25 13 13 5 12 32 32 27 25 36 48 36 32 25 34 22 19 27 42 19 23 31 31 37 19 14 31 26 32 33 22 20 31 20 18 33 27 32 31 24 26 32 37 25 16 22 44 31 11 37 26 21 17 24 43 10 22 32 21 32 19 25 32 31 37 40 30 22 48 47 8 16 24 43 48 48 48 48 30 16 21 17 14 9 4 6 21 24 16 33 47 31 16 11 31 23 23 18 32 30 31 14 20 43 28 8 22 47 25 9 47 47 40 26 17 20 11 17 25 20 16 31 14 25 47 47 27 17 27 28 14 20 8 16 21 11 15 28 20 30 23 3 18 24 13 15 8 12 32 4 3 18 11 38 38 20 13 7 28 13 3 5 8 5 6 11 28 6 3 2 3 3 2 6 10 2 1 1 3 4 15 20 20 16 14 13 7 10 5 13 3 2 5 4 4 9 17 12 3 4 3 5 2 8 6 5 21 21 17 10 10 21 9 8 10 4 5 4 6 25 6 4 12

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_109312857_109313794
seq2: B6Ng01-175B05.b_44_982

seq1  GAATTCCTTGGGGGTAGATTTCTAGTAGAAGAGTTGCTGGGTCAAAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGGGGTAGATTTCTAGTAGAAGAGTTGCTGGGTCAAAGGTT  50

seq1  AGGTGCATGTTTACAGTGTTGTCCTGGAGCCAGCTGGCTAGGGTGGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGTTTACAGTGTTGTCCTGGAGCCAGCTGGCTAGGGTGGAGGT  100

seq1  TGCAACAAATTGAACAGAAATGGTGAGCGTGCAGCCCTCTTGAGGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAATTGAACAGAAATGGTGAGCGTGCAGCCCTCTTGAGGGGAAG  150

seq1  CGGCAGTGGAAAATTAAAGGCGGAAGTATTGTTCCTTTGGTCACCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTGGAAAATTAAAGGCGGAAGTATTGTTCCTTTGGTCACCATTTA  200

seq1  GGGGGATACAGCCCACCACAGAGAAGCAGAGAAGACAAGGTGGCGGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATACAGCCCACCACAGAGAAGCAGAGAAGACAAGGTGGCGGGTAG  250

seq1  GTGGCTTCCCGGCAGGGCAAGTGTGCAACTGGAACACTGTACCTACAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCCCGGCAGGGCAAGTGTGCAACTGGAACACTGTACCTACAACT  300

seq1  CAAAGACTATGAAGCAGAGATCGGGCCAGGAAATGGGCCAGGCTGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTATGAAGCAGAGATCGGGCCAGGAAATGGGCCAGGCTGTAACA  350

seq1  CCCAAGGCCTGCCTCGAGTGACCTACTTCCTTCAGCCCAGCTCCACCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGCCTGCCTCGAGTGACCTACTTCCTTCAGCCCAGCTCCACCTCC  400

seq1  TGAAGGGTCCACAGCTTCCACAAAACAGTACCACTCCCTGGGACCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTCCACAGCTTCCACAAAACAGTACCACTCCCTGGGACCAAGTT  450

seq1  AAAGATTGTGCTGGACACTTCACATTCAAACCGTGTGTCCTAGTGCGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGTGCTGGACACTTCACATTCAAACCGTGTGTCCTAGTGCGCTT  500

seq1  TCTGTTAGCTGCGATAAACACCAAGACCCAAAGCAACTTTGGGAGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGCTGCGATAAACACCAAGACCCAAAGCAACTTTGGGAGGAGAG  550

seq1  AGTTTATTTCATTTTACAGATTATAGGCCGTCATCTCGGGAAGCCATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTCATTTTACAGATTATAGGCCGTCATCTCGGGAAGCCATGGC  600

seq1  AGGAGCTTAAAATGGGCACCACACCACAGAAGAAAACTGCTTCCTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTAAAATGGGCACCACACCACAGAAGAAAACTGCTTCCTGGCTT  650

seq1  ACTCATCTACCTTTCCTCTATAGCCCAGACCCACCTGACCACCAGGCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTACCTTTCCTCTATAGCCCAGACCCACCTGACCACCAGGCACG  700

seq1  ACACTGTCCACGGTGGGCTAGCCACTCCTATGTCAATTCCCGATTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCCACGGTGGGCTAGCCACTCCTATGTCAATTCCCGATTGAGAA  750

seq1  CCCCATGAACAGCCATGCCCAGAGCCCAATGAGATGCGGCCAATTCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGAACAGCCATGCCCAGAGCCCAATGAGATGCGGCCAATTCTTCA  800

seq1  ACTGTGGTTTTTCTCTTGGCAGTGTCAAGTTGATGACTAAAGCCTACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTTTTTCTCTTGGCAGTGTCAAGTTGATGACTAAAGCCTACTAT  850

seq1  GACACCGTACCCCGTTAATCCGTTAATGAAGTCATGTGTAGCAAAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGTACCCCGTTAATCCGTTAATGAAGTCATGTGTAGCAAAAGTTT  900

seq1  TCTTTACTGG-AGCATTTTAAACTAATAATTCAATTTCT  938
      |||||||||| ||||||||||||||||||||||||||||
seq2  TCTTTACTGGAAGCATTTTAAACTAATAATTCAATTTCT  939

seq1: chr4_109435694_109436835
seq2: B6Ng01-175B05.g_63_1176 (reverse)

seq1  TCGCCTGCTCTGTAGCAATGAGAAAGAGAAAGAGAAAGGCAGATTACTGC  50
      |||| |||||||||||| ||     |||  | ||| | ||||||||||||
seq2  TCGCTTGCTCTGTAGCATTG-----GAGGGA-AGAGACGCAGATTACTGC  44

seq1  AAACAGAAATAAAAAAAAGGGTATGAAAGGGAGAAAAGAGGCCTTGAAGC  100
              ||| | || | ||||||||  |||||||||||    ||||||
seq2  --------ATAGATAAGATGGTATGAA--GGAGAAAAGAG---CTGAAGC  81

seq1  CTTTCATATCATTTGAGTTTTTCAAGTGCGTTATTTTTGGGGAGGGTGGA  150
      | ||||||||| |||||||||   |||||| ||||||| |||||||||||
seq2  C-TTCATATCA-TTGAGTTTT--CAGTGCG-TATTTTT-GGGAGGGTGGA  125

seq1  TGTATGAAAAGCCAATTGGAGTTTTTTTTGTTTTAAAGTGCGCTATTTAA  200
      |||||| |||||||| ||||| ||||||||||||||||||||||||||||
seq2  TGTATG-AAAGCCAA-TGGAG-TTTTTTTGTTTTAAAGTGCGCTATTTAA  172

seq1  GCACCATGAATATAAGCGCAAGAGCAACAGTTGACTGAGTTTACTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGAATATAAGCGCAAGAGCAACAGTTGACTGAGTTTACTGTGGT  222

seq1  GAAGCTTTGTGTCCGAGGATGAATCAAATTCATTATATTCAACTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTGTGTCCGAGGATGAATCAAATTCATTATATTCAACTCTTTGT  272

seq1  GGTTTAACATGAATGTAGGGTTAGTTTCACAAGACTGTGTCTGTTTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAACATGAATGTAGGGTTAGTTTCACAAGACTGTGTCTGTTTAGGA  322

seq1  TAATTATAATTTAATATTTTCCTTTCATAAAGTTATCACTGTAGATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAATTTAATATTTTCCTTTCATAAAGTTATCACTGTAGATGTCT  372

seq1  AAAATTTTAATCAAAGCAGATTTTGTACATTGACTTTGAAGCACCCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAATCAAAGCAGATTTTGTACATTGACTTTGAAGCACCCTGAC  422

seq1  AGTTTAAAATTCAAAGGAAAGCTTTTTTAGTTTTCAAAAGAAAAGAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAATTCAAAGGAAAGCTTTTTTAGTTTTCAAAAGAAAAGAGAGG  472

seq1  CTCATTCTAATGGCATTGAAGCAGAGATTATTATAACTAATTAGAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTAATGGCATTGAAGCAGAGATTATTATAACTAATTAGAAGTCA  522

seq1  CACATCTGTTAGCTTTTGGTTTGTGATTTATTTACGTATTTGTGAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTTAGCTTTTGGTTTGTGATTTATTTACGTATTTGTGAGTAAA  572

seq1  ACACATACTTTTAAAATACATTGCCATTATAGTGAATTAAAATGATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTTTTAAAATACATTGCCATTATAGTGAATTAAAATGATAAAA  622

seq1  TACGCTTTCAAAGGAACTATTTACTTAATTATTTTTATAAATTTCTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTTTCAAAGGAACTATTTACTTAATTATTTTTATAAATTTCTAGAG  672

seq1  TTGCATAAAATATATAATTAAATAAGGGAATATCGAATATGAATCAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAAATATATAATTAAATAAGGGAATATCGAATATGAATCAATAT  722

seq1  CACAATTACGCACCTTAAGCTGAACTGTATTTTCAAACAAAATATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTACGCACCTTAAGCTGAACTGTATTTTCAAACAAAATATATTCA  772

seq1  CAGTTTTGTTAATATAATTCTGGTTTACTAAGTAGTCATGTAATACTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTTAATATAATTCTGGTTTACTAAGTAGTCATGTAATACTAAC  822

seq1  TAATGTAGCTTTCTTTTATATTTATAGTTATTCCTTAAATTTAAAGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGCTTTCTTTTATATTTATAGTTATTCCTTAAATTTAAAGCTGT  872

seq1  TCATCTACAATACTGTAATTTTAAATGCTATCAGTGTAAATGTTTTCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACAATACTGTAATTTTAAATGCTATCAGTGTAAATGTTTTCTTA  922

seq1  TGACAATGTACGTAGCTAATATATAAATGATCACATTTAAAAAAATATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGTACGTAGCTAATATATAAATGATCACATTTAAAAAAATATGT  972

seq1  GCCCTTTGTTTTTCTTTTGATGAGATAACGTCATAAACAACTCTAAACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGTTTTTCTTTTGATGAGATAACGTCATAAACAACTCTAAACTT  1022

seq1  AAGCAAGTCACTCATTTTTTTTTTCATAGTGTATTTTAATGGCACAGATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTCACTCATTTTTTTTTTCATAGTGTATTTTAATGGCACAGATT  1072

seq1  ATCTTTGTTAACCCCATGTTACCAATATTCTTATTTGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTAACCCCATGTTACCAATATTCTTATTTGAATTC  1114

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information