BAC Information

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BAC

Clone NameB6Ng01-175I11
Chromosome4 (Build37)
Map Location 16,551,904 - 16,658,768
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175I11.bB6Ng01-175I11.g
ACCGA003307GA003308
length1,0941,149
definitionB6Ng01-175I11.b B6Ng01-175I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,551,904 - 16,552,995)(16,657,626 - 16,658,768)
sequence
gaattctacctcaccccttttttatattacatgtactttgtgtatataat
acattactgcttctgtttttaagtttttatgggcttcctttgtgtatgaa
cttgtgtgtctctctgtctctatgtttcttgtgcttttattttggttaat
tttcttgtttggctgttttctcatattctgatctgtttggtcttaattta
cctaatcataatttattattattccttagatgtctgtttgttttttaaca
agaatcagaaagggtgtggaaccatagggctctgtatggatcagaagaga
tccataggaaagaggagataggaaggaattgggaagaatagggagaagtg
aaactaatcagaaaaaaaaaatattgcatgaaaaaaatctaacgataaaa
agaaaagacaaagaaggtagtataaggagagaacagattactgccatgtc
tgtgggttaactctgtaattgctaatttcctaacacttccatgtatctga
tctactcccgagacattcctaagcaggtcttttttttttttttttttttt
ttttttagttttacttcttctatccacacgtatttcttttggctttatat
attattttatttgcctggaagtttttcttccctcacttgcctagtgagta
tcttttaaattaactcattttcacattagtaaaatgtcccttgtcttctt
ggataaagattgcttccattttgatgcacatactggccatgtataactgt
ttctcaacattcctcaaaatttcagtttatatttttggatactatgttat
agacttcaattcctgactgtaaaggctttgcattgtgactggattttgct
caatatttttatctgcagtgttgggctgaacttcaacgactgggttcatc
atatgtgctcagtgtacattcaatatttaaaactgtgggtagctagatat
actagatacatcctgctaaattgttatccacagattcttgcctgagaagt
tttgtattttacaatttcctatatttttccttgatgggatctctctagat
attttgtttccataacattttataaattattactcagtgaattg

gaattctccctgtgaaattctgatgccaaaagagatggttttaaaatgaa
agagggtactgcatggcaatgtcaactcgtaaagtcagaattgaatattt
tctgatgtcaaaatattacatatgtgttttctgtttttaagtattatttt
tactttgaaggaagctgttgattctcatatatcttttaaaatgaaatgaa
ataagttagaaaactgaaatgaaagcattaacctaaaaagaaatatacaa
ggtatattgactacaaggtctggaaccaaaaacaacagagacactcattc
taaagcattctcttattgattatgactaaaaacactaaaacaaatatact
ctgcatgaacttgtttttaagatccctttacatcttaaaattctatcaga
atttttcagcaaaaaataatttttatatattggtgttttgtgtgtttcta
catataaataataaaaagctctttctgctctttgagaggactagaattga
atttcccacatgtgaactaacaaccatctataactccgtatattctacca
gaatgagaaacagaataaagccgatgagacaaactagaaagagatttaaa
ttgcacttgtaaatcaattcatagtaataattataattaatgaaaaattc
ttaaatatatttttaaaacagaaactgtcagatgggctaaaatcaagtat
atattgcctggaaaagtatgacaatgtgtgtattttaaaaacaatattat
aatgtggcaaaaaagtaagcaagcacaaacttcacaataatatctaatgt
agtactattgacagtgcaaaatatggatccaaaataaagacattatgaga
gagaaaagatgttattacctgataactacaaatcaatttactatgaagag
ggagatgagtgttataattacatgcatacaacaaaactcctaaaagcagc
aatctaataaaatttagtttgctttctgtgctgtaatacctttaacaaaa
aacaacttgggaaggaagagattcaccttgtgtaacagggtaacattcca
ccattaaaagaaaacaaaagcaagaactaaaagcatatttgagaacaggg
aactgaaagaatgaacaatgaaggtatgactacttaataggccttaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_16551904_16552995
seq2: B6Ng01-175I11.b_43_1136

seq1  GAATTCTACCTCACCCCTTTTTTATATTACATGTACTTTGTGTATATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTCACCCCTTTTTTATATTACATGTACTTTGTGTATATAAT  50

seq1  ACATTACTGCTTCTGTTTTTAAGTTTTTATGGGCTTCCTTTGTGTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTGCTTCTGTTTTTAAGTTTTTATGGGCTTCCTTTGTGTATGAA  100

seq1  CTTGTGTGTCTCTCTGTCTCTATGTTTCTTGTGCTTTTATTTTGGTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTCTCTCTGTCTCTATGTTTCTTGTGCTTTTATTTTGGTTAAT  150

seq1  TTTCTTGTTTGGCTGTTTTCTCATATTCTGATCTGTTTGGTCTTAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTTGGCTGTTTTCTCATATTCTGATCTGTTTGGTCTTAATTTA  200

seq1  CCTAATCATAATTTATTATTATTCCTTAGATGTCTGTTTGTTTTTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCATAATTTATTATTATTCCTTAGATGTCTGTTTGTTTTTTAACA  250

seq1  AGAATCAGAAAGGGTGTGGAACCATAGGGCTCTGTATGGATCAGAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGAAAGGGTGTGGAACCATAGGGCTCTGTATGGATCAGAAGAGA  300

seq1  TCCATAGGAAAGAGGAGATAGGAAGGAATTGGGAAGAATAGGGAGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGGAAAGAGGAGATAGGAAGGAATTGGGAAGAATAGGGAGAAGTG  350

seq1  AAACTAATCAGAAAAAAAAAATATTGCATGAAAAAAATCTAACGATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATCAGAAAAAAAAAATATTGCATGAAAAAAATCTAACGATAAAA  400

seq1  AGAAAAGACAAAGAAGGTAGTATAAGGAGAGAACAGATTACTGCCATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACAAAGAAGGTAGTATAAGGAGAGAACAGATTACTGCCATGTC  450

seq1  TGTGGGTTAACTCTGTAATTGCTAATTTCCTAACACTTCCATGTATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTAACTCTGTAATTGCTAATTTCCTAACACTTCCATGTATCTGA  500

seq1  TCTACTCCCGAGACATTCCTAAGCAGGTCTTTTTTTTTTTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCCGAGACATTCCTAAGCAGGTCTTTTTTTTTTTTTTTTTTTTT  550

seq1  TTTTTTAGTTTTACTTCTTCTATCCACACGTATTTCTTTTGGCTTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGTTTTACTTCTTCTATCCACACGTATTTCTTTTGGCTTTATAT  600

seq1  ATTATTTTATTTGCCTGGAAGTTTTTCTTCCCTCACTTGCCTAGTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTATTTGCCTGGAAGTTTTTCTTCCCTCACTTGCCTAGTGAGTA  650

seq1  TCTTTTAAATTAACTCATTTTCACATTAGTAAAATGTCCCTTGTCTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAATTAACTCATTTTCACATTAGTAAAATGTCCCTTGTCTTCTT  700

seq1  GGATAAAGATTGCTTCCATTTTGATGCACATACTGGCCATGTATAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGATTGCTTCCATTTTGATGCACATACTGGCCATGTATAACTGT  750

seq1  TTCTCAACATTCCTCAAAATTTCAGTTTATATTTTTGGATACTATGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACATTCCTCAAAATTTCAGTTTATATTTTTGGATACTATGTTAT  800

seq1  AGACTTCAATTCCTGACTGTAAAGGCTTTGCATTGTGACTGGATTTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAATTCCTGACTGTAAAGGCTTTGCATTGTGACTGGATTTTGCT  850

seq1  CAATA-TTTTATCTGCAGTGTTGGGCTGAACTTCAACGACT-GGTTCATC  898
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAATATTTTTATCTGCAGTGTTGGGCTGAACTTCAACGACTGGGTTCATC  900

seq1  ATATGTGCTCAGTGTACATTCAATATTTAAAACTGTGGGTAGCTAGATAA  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATATGTGCTCAGTGTACATTCAATATTTAAAACTGTGGGTAGCTAGAT-A  949

seq1  TACTAGATACATCCTGCTAAAATG-TAT-CACAGATTCTTGCCTGAGAAG  996
      ||||||||||||||||||||| || ||| |||||||||||||||||||||
seq2  TACTAGATACATCCTGCTAAATTGTTATCCACAGATTCTTGCCTGAGAAG  999

seq1  TTTTGTATTTTACAAATTTCTATTATTTTTCTTGTATGGGAT-TCTCTAA  1045
      ||||||||||||||| || ||| |||||||| |  ||||||| ||||| |
seq2  TTTTGTATTTTACAATTTCCTA-TATTTTTCCTTGATGGGATCTCTCT-A  1047

seq1  GATATTTTGTTTCCATAACA-TTTATAAATAATTACTCAGGTGAATTG  1092
      |||||||||||||||||||| ||||||||| |||||||| ||||||||
seq2  GATATTTTGTTTCCATAACATTTTATAAATTATTACTCA-GTGAATTG  1094


seq1: chr4_16657626_16658768
seq2: B6Ng01-175I11.g_62_1210 (reverse)

seq1  GATTAA-GCCTA-TAAGTAGTCATA-CTTCATTGTTCA-TCTTTCAGTT-  45
      |||||| ||||| |||||||||||| |||||||||||| |||||||||| 
seq2  GATTAAGGCCTATTAAGTAGTCATACCTTCATTGTTCATTCTTTCAGTTC  50

seq1  CCTG-TCTCAAAATTATGGCTTTTAGTTCTTGCTTTTG-TTTCTTTTAAT  93
      |||| |||||||  ||| |||||||||||||||||||| |||||||||||
seq2  CCTGTTCTCAAA--TAT-GCTTTTAGTTCTTGCTTTTGTTTTCTTTTAAT  97

seq1  GGTGGATTGTTA-CCTG-TACACAAGGTGAATCTCTTCCTTCCCAAGTTG  141
      |||||| ||||| |||| ||||||||||||||||||||||||||||||||
seq2  GGTGGAATGTTACCCTGTTACACAAGGTGAATCTCTTCCTTCCCAAGTTG  147

seq1  -TTTTTGTTAAAGGTATTACAGCAACAGAAAGCAAACTAAATTTTATTAG  190
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTTGTTAAAGGTATTACAGC-ACAGAAAGCAAACTAAATTTTATTAG  196

seq1  ATTGCTGCTTTTAGGAGTTTTGTTGTATGCATGTAATTATAACACTCATC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCTTTTAGGAGTTTTGTTGTATGCATGTAATTATAACACTCATC  246

seq1  TCCCTCTTCATAGTAAATTGATTTGTAGTTATCAGGTAATAACATCTTTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCATAGTAAATTGATTTGTAGTTATCAGGTAATAACATCTTTT  296

seq1  CTCTCTCATAATGTCTTTATTTTGGATCCATATTTTGCACTGTCAATAGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCATAATGTCTTTATTTTGGATCCATATTTTGCACTGTCAATAGT  346

seq1  ACTACATTAGATATTATTGTGAAGTTTGTGCTTGCTTACTTTTTTGCCAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATTAGATATTATTGTGAAGTTTGTGCTTGCTTACTTTTTTGCCAC  396

seq1  ATTATAATATTGTTTTTAAAATACACACATTGTCATACTTTTCCAGGCAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATATTGTTTTTAAAATACACACATTGTCATACTTTTCCAGGCAA  446

seq1  TATATACTTGATTTTAGCCCATCTGACAGTTTCTGTTTTAAAAATATATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTTGATTTTAGCCCATCTGACAGTTTCTGTTTTAAAAATATATT  496

seq1  TAAGAATTTTTCATTAATTATAATTATTACTATGAATTGATTTACAAGTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTTTCATTAATTATAATTATTACTATGAATTGATTTACAAGTG  546

seq1  CAATTTAAATCTCTTTCTAGTTTGTCTCATCGGCTTTATTCTGTTTCTCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAATCTCTTTCTAGTTTGTCTCATCGGCTTTATTCTGTTTCTCA  596

seq1  TTCTGGTAGAATATACGGAGTTATAGATGGTTGTTAGTTCACATGTGGGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAGAATATACGGAGTTATAGATGGTTGTTAGTTCACATGTGGGA  646

seq1  AATTCAATTCTAGTCCTCTCAAAGAGCAGAAAGAGCTTTTTATTATTTAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATTCTAGTCCTCTCAAAGAGCAGAAAGAGCTTTTTATTATTTAT  696

seq1  ATGTAGAAACACACAAAACACCAATATATAAAAATTATTTTTTGCTGAAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAACACACAAAACACCAATATATAAAAATTATTTTTTGCTGAAA  746

seq1  AATTCTGATAGAATTTTAAGATGTAAAGGGATCTTAAAAACAAGTTCATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATAGAATTTTAAGATGTAAAGGGATCTTAAAAACAAGTTCATG  796

seq1  CAGAGTATATTTGTTTTAGTGTTTTTAGTCATAATCAATAAGAGAATGCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTATATTTGTTTTAGTGTTTTTAGTCATAATCAATAAGAGAATGCT  846

seq1  TTAGAATGAGTGTCTCTGTTGTTTTTGGTTCCAGACCTTGTAGTCAATAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGAGTGTCTCTGTTGTTTTTGGTTCCAGACCTTGTAGTCAATAT  896

seq1  ACCTTGTATATTTCTTTTTAGGTTAATGCTTTCATTTCAGTTTTCTAACT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTATATTTCTTTTTAGGTTAATGCTTTCATTTCAGTTTTCTAACT  946

seq1  TATTTCATTTCATTTTAAAAGATATATGAGAATCAACAGCTTCCTTCAAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTTCATTTTAAAAGATATATGAGAATCAACAGCTTCCTTCAAA  996

seq1  GTAAAAATAATACTTAAAAACAGAAAACACATATGTAATATTTTGACATC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAATACTTAAAAACAGAAAACACATATGTAATATTTTGACATC  1046

seq1  AGAAAATATTCAATTCTGACTTTACGAGTTGACATTGCCATGCAGTACCC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATTCAATTCTGACTTTACGAGTTGACATTGCCATGCAGTACCC  1096

seq1  TCTTTCATTTTAAAACCATCTCTTTTGGCATCAGAATTTCACAGGGAGAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTTTAAAACCATCTCTTTTGGCATCAGAATTTCACAGGGAGAA  1146

seq1  TTC  1143
      |||
seq2  TTC  1149


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