BAC Information

Click to search

BAC

Clone NameB6Ng01-176F22
Chromosome4 (Build37)
Map Location 36,271,063 - 36,441,539
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F22.bB6Ng01-176F22.g
ACCGA003921GA003922
length1,0791,071
definitionB6Ng01-176F22.b B6Ng01-176F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,271,063 - 36,272,103)(36,440,465 - 36,441,539)
sequence
gaattctgaaaaatcctaggtgttaaacctcaaaataaaaatttctagtt
ggtaccttttcttattttacagtaaaaattattattcaattgcttctctt
atttcttctgtaatatttttaaaatcttcattttctgcccttaattatag
ctgcattccatatatttccctcaaatttatcttcttgttactcattctct
ctttagcttcatcaaatactgcatacatgactgactttcaatttaataat
gatattaatatttataattctatttgatatatttattcaaatattacttc
cttctttttaagttaatatgtttcttagtttcaacattacttttcatgct
tttcaaattgttctattatttctatagttttgagggtagaaatttcctga
aaacttccttgacttattatccttcagggagatttgtttcttcaaaattg
aattaggtttttatttctattttattttttaaacccatgaagactatgaa
tcctgaatgatcacatttccctagaaggttgttatttatctattttctat
ttcattttctacttctatgcatatgtgagcttatttgatgagatttacat
taaaatcaggaaatgtgggttaaggagtctgcagttcagagcactgtagg
cttcatctgacagctgaaaactctaataacagaaagaatgatctctccta
gcaagtgacaccacctattcttaccagccatcaattgcccattactccct
aaccccccaagtggtcagacctaaacacatatatagacaagcaagcaggt
tggacttatacatacaaatgtgtgtgtgtgtgtgccatgagtattgtgtt
tctgtatgtgcttgtgtaaaaataaaaaagaaagaaggaatatgacataa
atttgagaaatagagggtgctcacaagaggagttggggcaagtaagccat
gcagaaaattgtgtgtgaaattgtgagccactttccacataaaattctca
aaacatgaattaatgtaaaaattaattaagttaaacaaaatcagagagaa
tccttccaccttgatcagcttttcagggt

gaattctagatgtcagttttgaccctttgaggtgagatttcatattaacc
cattacctaatttcaatggccctctataggaataaatcaaattgttttcc
aataatgatatttttctgatgcactcatatgtaagattgacgtgttgtga
gttttgtttctgtggtactcatactatctaatcagattttattaacagtt
ttatacttaccttatgacttctcgtttagtcttactttcattcaaagact
tctgaattcatggcagcatcctatggcttcaagaacaggttctatgcaaa
gtttatgtattttaatctgttaaatcatccggatgtagtctagactttta
gatgcatggtgcatataattgtgtctgctttggctactgactttaggaga
taaacacaagagaatagaaaggttattcatttaaattacaagacagatat
tactgggaacgtctgaagcagctagcaaaactagaggtgttgatgactgg
gatcatttcacatttaattagtggattcttatcctccctctgcactgctg
ctcaaatcaggggatacagaactctgtccactcagcatgaattactgttt
ctccatttggtagaaaagacaagagaactggttagcaactctttacattg
tttcaaatgtcgttagaggatcagcataaaggaaatgatgcactgttata
aaatgaagttaggatgttttcatgtggcccaaatccagaaaatatccatt
aaaataaaacatattcctgccaggggttacccagtacccagttcacccaa
aggaaaagcatcaaatgaggatagagtctgtgatggggacaaatgctgct
ttacttctggcaattttaactttttcttattactctagggccaaaaccta
ctggcttctggcaatttaactcttttcttgctatttggggcttaaatccg
ttggcttctggcaattaactcttgctgctttcagcagggcaataacagct
tagtacttgaattcttccttttgaattcagctcaagatagagctgaagtt
tcttacacttctggagcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36271063_36272103
seq2: B6Ng01-176F22.b_48_1101

seq1  GAATTCTGAAAAATCCTAGGTGTTAAACCTCAAAATAAAAATTTCTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAAATCCTAGGTGTTAAACCTCAAAATAAAAATTTCTAGTT  50

seq1  GGTACCTTTTCTTATTTTACAGTAAAAATTATTATTCAATTGCTTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTTTCTTATTTTACAGTAAAAATTATTATTCAATTGCTTCTCTT  100

seq1  ATTTCTTCTGTAATATTTTTAAAATCTTCATTTTCTGCCCTTAATTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTGTAATATTTTTAAAATCTTCATTTTCTGCCCTTAATTATAG  150

seq1  CTGCATTCCATATATTTCCCTCAAATTTATCTTCTTGTTACTCATTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCATATATTTCCCTCAAATTTATCTTCTTGTTACTCATTCTCT  200

seq1  CTTTAGCTTCATCAAATACTGCATACATGACTGACTTTCAATTTAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTTCATCAAATACTGCATACATGACTGACTTTCAATTTAATAAT  250

seq1  GATATTAATATTTATAATTCTATTTGATATATTTATTCAAATATTACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAATATTTATAATTCTATTTGATATATTTATTCAAATATTACTTC  300

seq1  CTTCTTTTTAAGTTAATATGTTTCTTAGTTTCAACATTACTTTTCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTAAGTTAATATGTTTCTTAGTTTCAACATTACTTTTCATGCT  350

seq1  TTTCAAATTGTTCTATTATTTCTATAGTTTTGAGGGTAGAAATTTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTGTTCTATTATTTCTATAGTTTTGAGGGTAGAAATTTCCTGA  400

seq1  AAACTTCCTTGACTTATTATCCTTCAGGGAGATTTGTTTCTTCAAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCTTGACTTATTATCCTTCAGGGAGATTTGTTTCTTCAAAATTG  450

seq1  AATTAGGTTTTTATTTCTATTTTATTTTTTAAACCCATGAAGACTATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTTTTTATTTCTATTTTATTTTTTAAACCCATGAAGACTATGAA  500

seq1  TCCTGAATGATCACATTTCCCTAGAAGGTTGTTATTTATCTATTTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATGATCACATTTCCCTAGAAGGTTGTTATTTATCTATTTTCTAT  550

seq1  TTCATTTTCTACTTCTATGCATATGTGAGCTTATTTGATGAGATTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTACTTCTATGCATATGTGAGCTTATTTGATGAGATTTACAT  600

seq1  TAAAATCAGGAAATGTGGGTTAAGGAGTCTGCAGTTCAGAGCACTGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGGAAATGTGGGTTAAGGAGTCTGCAGTTCAGAGCACTGTAGG  650

seq1  CTTCATCTGACAGCTGAAAACTCTAATAACAGAAAGAATGATCTCTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTGACAGCTGAAAACTCTAATAACAGAAAGAATGATCTCTCCTA  700

seq1  GCAAGTGACACCACCTATTCTTACCAGCCATCAATTGCCCATTACTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGACACCACCTATTCTTACCAGCCATCAATTGCCCATTACTCCCT  750

seq1  AACCCCCCAAGTGGTCAGACCTAAACACATATATAGACAAGCAAGCAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCAAGTGGTCAGACCTAAACACATATATAGACAAGCAAGCAGGT  800

seq1  TGGACTTATACATACAAATGTGTGTGTGTGTGTG-CATGAGTA-TGTGTT  848
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TGGACTTATACATACAAATGTGTGTGTGTGTGTGCCATGAGTATTGTGTT  850

seq1  TCTGTATGTGCCTGTGTAAAAATAAAAAAAGAAGAA-GAATATGACATAA  897
      ||||||||||| |||||||||||||||||  ||||| |||||||||||||
seq2  TCTGTATGTGCTTGTGTAAAAATAAAAAAGAAAGAAGGAATATGACATAA  900

seq1  ATTTGAGAAATAGAGGGTGC-CACAAGAGGAGTT-GGGCAAGTAAG-CAT  944
      |||||||||||||||||||| ||||||||||||| ||||||||||| |||
seq2  ATTTGAGAAATAGAGGGTGCTCACAAGAGGAGTTGGGGCAAGTAAGCCAT  950

seq1  GCAGAAA---TTGTGTGAAATTGTGAG-CAC-TTCCACATAAAATTCTCA  989
      |||||||    |||||||||||||||| ||| ||||||||||||||||||
seq2  GCAGAAAATTGTGTGTGAAATTGTGAGCCACTTTCCACATAAAATTCTCA  1000

seq1  AAACATGAAATAAATGTAAAA--TAAATAAGTAAAACAAAATCAGAGAG-  1036
      ||||||| ||| |||||||||  ||| ||||| |||||||||||||||| 
seq2  AAACATG-AATTAATGTAAAAATTAATTAAGTTAAACAAAATCAGAGAGA  1049

seq1  ATCCT  1041
      |||||
seq2  ATCCT  1054


seq1: chr4_36440465_36441539
seq2: B6Ng01-176F22.g_68_1138 (reverse)

seq1  TTCTGGCTCAAGAAGTGTTAAGAAACTTCAAGCCTCTATCCTGAGGCCTG  50
      |||| |||| ||||||| ||||||||||||   ||||||| ||||  |||
seq2  TTCT-GCTCCAGAAGTG-TAAGAAACTTCA--GCTCTATCTTGAG--CTG  44

seq1  AATTTAAAAAAGAAGAATTCAAGTAACTAAGCTTGTTA-TGCCCTGCTGA  99
      || || |||| ||||||||||||| ||||||| ||||| |||||||||||
seq2  AA-TTCAAAAGGAAGAATTCAAGT-ACTAAGC-TGTTATTGCCCTGCTGA  91

seq1  AAGCAGCAAGAGTTAATTGCCAGAAGCCAACGGATTTAAGCCCCAAATAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAGAGTTAATTGCCAGAAGCCAACGGATTTAAGCCCCAAATAG  141

seq1  CAAGAAAAGAGTTAAATTGCCAGAAGCCAGTAGGTTTTGGCCCTAGAGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAGAGTTAAATTGCCAGAAGCCAGTAGGTTTTGGCCCTAGAGTA  191

seq1  ATAAGAAAAAGTT-AAATTGCCAGAAGT-AAGCAGCATTTGTCCCCATCA  247
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  ATAAGAAAAAGTTAAAATTGCCAGAAGTAAAGCAGCATTTGTCCCCATCA  241

seq1  CAGACTCTATCCTCATTTGATGCTTT--CCTTGGGTGAACTGGGTACTGG  295
      ||||||||||||||||||||||||||  | ||||||||||||||||||||
seq2  CAGACTCTATCCTCATTTGATGCTTTTCCTTTGGGTGAACTGGGTACTGG  291

seq1  GTAACCCCTGGCAGGAATATGTTTTATTTTAATGGATATTTTCTGGATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCTGGCAGGAATATGTTTTATTTTAATGGATATTTTCTGGATTT  341

seq1  GGGCCACATGAAAACATCCTAACTTCATTTTATAACAGTGCATCATTTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACATGAAAACATCCTAACTTCATTTTATAACAGTGCATCATTTCC  391

seq1  TTTATGCTGATCCTCTAACGACATTTGAAACAATGTAAAGAGTTGCTAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTGATCCTCTAACGACATTTGAAACAATGTAAAGAGTTGCTAAC  441

seq1  CAGTTCTCTTGTCTTTTCTACCAAATGGAGAAACAGTAATTCATGCTGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTTGTCTTTTCTACCAAATGGAGAAACAGTAATTCATGCTGAG  491

seq1  TGGACAGAGTTCTGTATCCCCTGATTTGAGCAGCAGTGCAGAGGGAGGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAGTTCTGTATCCCCTGATTTGAGCAGCAGTGCAGAGGGAGGAT  541

seq1  AAGAATCCACTAATTAAATGTGAAATGATCCCAGTCATCAACACCTCTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCACTAATTAAATGTGAAATGATCCCAGTCATCAACACCTCTAG  591

seq1  TTTTGCTAGCTGCTTCAGACGTTCCCAGTAATATCTGTCTTGTAATTTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAGCTGCTTCAGACGTTCCCAGTAATATCTGTCTTGTAATTTAA  641

seq1  ATGAATAACCTTTCTATTCTCTTGTGTTTATCTCCTAAAGTCAGTAGCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACCTTTCTATTCTCTTGTGTTTATCTCCTAAAGTCAGTAGCCA  691

seq1  AAGCAGACACAATTATATGCACCATGCATCTAAAAGTCTAGACTACATCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACACAATTATATGCACCATGCATCTAAAAGTCTAGACTACATCC  741

seq1  GGATGATTTAACAGATTAAAATACATAAACTTTGCATAGAACCTGTTCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTAACAGATTAAAATACATAAACTTTGCATAGAACCTGTTCTT  791

seq1  GAAGCCATAGGATGCTGCCATGAATTCAGAAGTCTTTGAATGAAAGTAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATAGGATGCTGCCATGAATTCAGAAGTCTTTGAATGAAAGTAAG  841

seq1  ACTAAACGAGAAGTCATAAGGTAAGTATAAAACTGTTAATAAAATCTGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACGAGAAGTCATAAGGTAAGTATAAAACTGTTAATAAAATCTGAT  891

seq1  TAGATAGTATGAGTACCACAGAAACAAAACTCACAACACGTCAATCTTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTATGAGTACCACAGAAACAAAACTCACAACACGTCAATCTTAC  941

seq1  ATATGAGTGCATCAGAAAAATATCATTATTGGAAAACAATTTGATTTATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTGCATCAGAAAAATATCATTATTGGAAAACAATTTGATTTATT  991

seq1  CCTATAGAGGGCCATTGAAATTAGGTAATGGGTTAATATGAAATCTCACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGAGGGCCATTGAAATTAGGTAATGGGTTAATATGAAATCTCACC  1041

seq1  TCAAAGGGTCAAAACTGACATCTAGAATTC  1075
      ||||||||||||||||||||||||||||||
seq2  TCAAAGGGTCAAAACTGACATCTAGAATTC  1071


| Home | SequenceCutter | Blast | Download |