MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-178F17
Chromosome	4 (Build37)
Map Location	47,984,540 - 48,112,914
singlet/doublet	doublet
Overlap gene	LOC100040788, Nr4a3
Upstream gene	Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream gene	Stx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gabbr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242425 MGI:2386030
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anks6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75691 MGI:1922941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435781 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	Galnt12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230145 MGI:2444664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col15a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12819 MGI:88449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tgfbr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21812 MGI:98728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666236 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666236
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	LOC666473 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666473
definition	note : microfibrillar-associated protein 1 pseudogene pseudo : _no_value

name	Alg2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56737 MGI:1914731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sec61b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66212 MGI:1913462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040788 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Nr4a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18124 MGI:1352457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stx17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67727 MGI:1914977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txndc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76299 MGI:1923549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Invs (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16348 MGI:1335082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tex10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269536 MGI:1344413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730528L13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66665 MGI:1913915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmeff1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230157 MGI:1926810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310039E09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68016 MGI:1915266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E130309F12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272031 MGI:2445015
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabbr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487262 GeneID:242425 MGI:2386030
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA) B receptor 2 transcript_id : NM_001081141.1

name	Anks6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906180 GeneID:75691 MGI:1922941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and sterile alpha motif domain containing 6 transcript_id : NM_001024136.1

name	Galnt12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802625 GeneID:230145 MGI:2444664
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 transcript_id : NM_172693.3

name	Col15a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134288881 GeneID:12819 MGI:88449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XV transcript_id : NM_009928.3

name	Tgfbr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254607 GeneID:21812 MGI:98728
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transforming growth factor, beta receptor I transcript_id : NM_009370.2

name	LOC666236 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371752 GeneID:666236
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC666236, transcript variant 1 transcript_id : XM_988573.1

name	LOC666236 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371754 GeneID:666236
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC666236, transcript variant 2 transcript_id : XM_988612.1

name	Alg2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560365 GeneID:56737 MGI:1914731
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase) transcript_id : NM_019998.2

name	Sec61b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378097 GeneID:66212 MGI:1913462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Sec61 beta subunit transcript_id : NM_024171.2

name	LOC100040788 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252384 GeneID:100040788
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100040788 transcript_id : XM_001475260.1

name	Nr4a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131008 GeneID:18124 MGI:1352457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 4, group A, member 3 transcript_id : NM_015743.2

name	Stx17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84579892 GeneID:67727 MGI:1914977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntaxin 17 transcript_id : NM_026343.2

name	Txndc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88900513 GeneID:76299 MGI:1923549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin domain containing 4 (endoplasmic reticulum) transcript_id : NM_029572.2

name	Invs (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111120341 GeneID:16348 MGI:1335082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inversin transcript_id : NM_010569.3

name	Tex10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801807 GeneID:269536 MGI:1344413
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis expressed gene 10 transcript_id : NM_172304.3

name	5730528L13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802429 GeneID:66665 MGI:1913915
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730528L13 gene transcript_id : NM_028137.2

name	Tmeff1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130469 GeneID:230157 MGI:1926810
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein with EGF-like and two follistatin-like domains 1 transcript_id : NM_021436.2

name	2310039E09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388680 GeneID:68016 MGI:1915266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310039E09 gene transcript_id : NM_026509.2

name	E130309F12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375125 GeneID:272031 MGI:2445015
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E130309F12 gene transcript_id : NM_178756.3

name	Gabbr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487263 GeneID:242425 MGI:2386030
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0004965 - GABA-B receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : GABA-B receptor 2; gamma-aminobutyric acid type B receptor, subunit 2; G protein-coupled receptor 51; ortholog of human G protein-coupled receptor 51 GPR51 product : gamma-aminobutyric acid (GABA) B receptor 2 protein_id : NP_001074610.1

name	Anks6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906181 CCDS:CCDS18157.1 GeneID:75691 MGI:1922941
definition	codon_start : 1 note : ankyrin repeat domain 14 product : sterile alpha motif domain containing 6 protein_id : NP_001019307.1

name	Galnt12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370010 CCDS:CCDS18158.1 GeneID:230145 MGI:2444664
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004653 - polypeptide N-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : mpp-GalNAc-T12 product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 protein_id : NP_766281.1

name	Col15a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134288882 CCDS:CCDS18159.1 GeneID:12819 MGI:88449
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0031012 - extracellular matrix [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 note : type XV collagen; procollagen type XV product : procollagen, type XV protein_id : NP_034058.2

name	Tgfbr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678323 CCDS:CCDS18160.1 GeneID:21812 MGI:98728
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004702 - receptor signaling protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0005024 - transforming growth factor beta receptor activity [Evidence IDA]; GO:0004675 - transmembrane receptor protein serine/threonine kinase activity [Evidence IEA] GO_process : GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0009790 - embryonic development [Evidence IMP]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0008354 - germ cell migration [Evidence IMP]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IDA]; GO:0007178 - transmembrane receptor protein serine/threonine kinase signaling pathway [Evidence IEA] codon_start : 1 product : transforming growth factor, beta receptor I protein_id : NP_033396.1

name	LOC666236 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371755 GeneID:666236
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_993706.1

name	LOC666236 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371753 GeneID:666236
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_993667.1

name	Alg2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560366 CCDS:CCDS18161.1 GeneID:56737 MGI:1914731
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0009058 - biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : alpha-1,3-mannosyltransferase ALG2 protein_id : NP_064382.2

name	Sec61b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13324684 GeneID:66212 MGI:1913462
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : Sec61 beta subunit protein_id : NP_077133.1

name	LOC100040788 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252385 GeneID:100040788
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475310.1

name	Nr4a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657397 CCDS:CCDS18163.1 GeneID:18124 MGI:1352457
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001707 - mesoderm formation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : neural orphan receptor 1 product : nuclear receptor subfamily 4, group A, member 3 protein_id : NP_056558.1

name	Stx17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84579893 CCDS:CCDS18164.1 GeneID:67727 MGI:1914977
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030868 - smooth endoplasmic reticulum membrane [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : syntaxin 17 protein_id : NP_080619.2

name	Txndc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19072792 CCDS:CCDS18165.1 GeneID:76299 MGI:1923549
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005788 - endoplasmic reticulum lumen [Evidence ISS]; GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0003756 - protein disulfide isomerase activity [Evidence ISS]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] GO_process : GO:0009100 - glycoprotein metabolism [Evidence ISS]; GO:0006457 - protein folding [Evidence ISS] [Evidence IEA]; GO:0030503 - regulation of cell redox homeostasis [Evidence ISS]; GO:0006986 - response to unfolded protein [Evidence ISS]; GO:0045045 - secretory pathway [Evidence ISS] codon_start : 1 note : endoplasmic reticulum resident protein 44kDa product : thioredoxin domain containing 4 protein_id : NP_083848.1

name	Invs (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111120342 CCDS:CCDS18166.1 GeneID:16348 MGI:1335082
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005516 - calmodulin binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : inversion of embryonic turning product : inversin protein_id : NP_034699.3

name	Tex10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249335 GeneID:269536 MGI:1344413
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : clone 18330 product : testis expressed gene 10 protein_id : NP_758508.2

name	5730528L13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312384 CCDS:CCDS18167.1 GeneID:66665 MGI:1913915
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0042802 - identical protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC66665 protein_id : NP_082413.1

name	Tmeff1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930405 CCDS:CCDS18168.1 GeneID:230157 MGI:1926810
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008083 - growth factor activity [Evidence IEA] codon_start : 1 note : tomoregulin-1; tomoregulin-like product : transmembrane protein with EGF-like and two follistatin-like domains 1 protein_id : NP_067411.1

name	2310039E09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386000 CCDS:CCDS18169.1 GeneID:68016 MGI:1915266
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC68016 protein_id : NP_080785.1

name	LOC435781 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435781
definition	number : 2 pseudo : _no_value

name	LOC435781 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435781
definition	number : 1 pseudo : _no_value

clone name	MSMg01-373N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293L19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-295J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316N21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-178F17.b	B6Ng01-178F17.g
ACC	GA005368	GA005369
length	1,171	763
definition	B6Ng01-178F17.b	B6Ng01-178F17.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(48,111,734 - 48,112,914)	(47,984,540 - 47,985,302)
sequence	gaattcagccttgtgttcagcccattcccagaacctctggcttaattatg agaagaaaacctatttattctgggacatcactactttgggataaattcct ggaagccatcagaaaagcatagggaagatctttctccgagtctcttctct ggatttctgagaaaggagtgtttcatgtttggcctgtcaagttgctttta gtctcagcttgtggactcaccctttatttaattctctttgaccttaggtc tccatgtccgtagctcagtcccctatcaagactacatcaagctttgtctt ttcccgagcacgtgtttacattattggttgaaacataaaatgatacttct acagtaccccacattctgcaaagtccctctcaagtattttagttcacttc gtcctaacaggaacccagagtgtcagagctagagaaatgaaggctctgaa gaaaaagtcatctatttaagactgcagagctagaagatggcagatcttgc caaggacctgggtattccaactcctcttcccactttttctcgctatattc atccagtgaccaaagtcatttctagccaccatccgttttgaatggctctg aaatctaaattaaactgattgacatttgaggccaaggaacagtactgact ctcttagtatctagcttagttgtgggagcaagtggagtcctcgtgcaagt tgagccagggagccttacaagagcaaggagttgcaggagagccccataac ccagtggttttcataccgtaatacctgtgagccttaaacaaacaaacaga cagacaaacaaacaaacaaccccactgaatcttggcttatgaccccagag ataatgatgttagtcaacttagatatttaagctcccaagatcacactaac atgcacagagcttgagaatgttacttaagagctcctgccacttgcctgta ctttgtaggacctgtggacccattctgccctttgtctttcctaaatgcca ttataccaaaccaataaagatcacagattaaatctaaaagtatagattta ctcaagctaggtttcatatacttccacagaaaaaagtatgccatcatata tatgtaatctttttttccctgagaacaaggattcccttgtgtagctgcct gtctggtacttactctgtaga	gaattccaactctccagcaggagcagatggggctgagaccaagcaagaag aaagggcaaatgctggagggttttgtctttgtaatgggccctgcttctct ctgagatgcagatgtagaaaagaaacagagctagagaatcgcaacatagt gttttctacaaaatcatgatctgagaaaaggatctacagctggattagga cctgcctcccatccaaaggaggcccacccaatttcataaggagaactacc ataccaccctgaccctgttcaacaagaaaagcaggatgtgttcctagaaa aggtagtctttgacacagtaaattggaactttgagcttcattcctttcca agaccctgaagcgatgacatgtctgtgaccataatttcttaaccacattg ttaggacatctgtcaagtacttcctcctgtactcgcttgctgatgtatat gatgctatttgttgaaatggggatgatggttacattaattaactctttgc taagtacagaggagccacactacagatattagctatgcacacgtttcata ttcaaaatgactttagtgtcatagcgctgtgaaataaatcctatggtgat acccatttttgtggacgaagaaagtgagttgagagatttcttaattcgcc tagagacactgcagcaagtcagccatgggacaaaggagaaacagcgtgag cttccacaactgctctctctctctctctctctctctctctctgtgtgtgt gtgtgtgtgtgtg
quality values	Open. Hide. 62 47 30 39 62 31 23 47 62 62 62 62 62 56 62 62 62 43 15 59 62 62 43 39 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 54 62 62 59 62 62 54 54 62 54 59 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 42 54 62 62 49 49 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 42 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 49 62 62 62 62 62 62 62 62 62 58 58 58 42 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 54 58 58 54 54 58 58 58 45 45 45 49 58 58 58 58 54 58 58 58 58 58 54 54 58 54 54 50 58 54 47 58 58 58 58 54 58 58 58 58 58 58 51 58 58 50 58 51 58 58 58 58 54 51 53 51 50 58 49 53 51 47 58 58 58 58 58 46 40 58 58 58 50 50 58 58 58 58 51 29 49 46 46 37 51 50 58 49 51 50 52 53 53 54 58 58 58 58 41 58 53 58 51 58 58 53 53 53 51 49 51 51 53 52 58 58 50 49 41 51 52 58 52 58 58 51 58 32 50 58 44 50 50 54 51 54 41 50 41 52 53 52 41 31 58 37 29 35 44 49 50 50 54 34 45 50 41 41 54 54 33 27 35 39 37 51 42 52 27 49 32 54 32 49 40 38 41 54 49 25 50 54 42 32 32 18 54 51 27 46 32 40 54 42 51 42 54 32 35 30 46 25 37 53 21 51 53 34 54 54 47 40 35 53 32 40 51 40 33 37 45 52 37 33 25 29 52 32 34 32 16 32 41 34 34 39 53 45 52 32 53 35 35 31 53 51 38 27 53 53 35 26 52 47 31 32 47 32 45 33 51 43 45 30 51 33 12 11 32 38 41 46 33 31 31 29 30 32 33 31 39 28 32 38 33 31 31 30 31 31 36 37 24 46 46 51 19 28 42 17 31 23 17 41 31 42 33 29 46 25 30 31 26 22 34 18 32 25 28 42 31 26 31 32 32 30 46 28 16 27 32 36 31 25 36 20 14 27 31 31 29 19 32 29 22 30 27 30 37 25 21 32 37 30 28 27 26 28 30 19 21 36 30 32 31 20 46 12 19 38 15 21 24 18 21 26 16 29 13 35 28 36 36 22 25 24 33 25 13 9 19 33 35 29 14 20 21 33 21 16 14 24 44 33 22 14 25 25 17 31 7 18 21 32 26 29 32 17 16 48 32 23 28 29 26 31 33 12 31 9 33 48 17 24 19 19 21 48 34 11 24 29 24 43 19 9 20 29 43 13 25 20 22 23 16 29 26 8 37 9 27 14 7 6 8 14 34 25 8 3 6 14 12 16 23 11 23 5 9 22 34 16 6 9 13 14 26 34 23 23 9 8 9 7 28 25 5 30 16 20 13 14 14 7 30 15 18 12 8 20 7 14 5 8 11 9 19 3 3 3 10 7 11 7 19 7 6 8 14 16 24 16 17 7 3 1 3 9 6 11 9 16 13 5 11 14 9 5 5 7 7 9 11 6 6 4 6 22 17 17 16 17 17 29 17 14 12 26 11 11 18 10 7 12 15 6 7 8 19 3 1 5 10 8 5 5 6 5 5 3 5 4 4 1 4 1 2 2 1 3 3 1 3 3 16 2 1 3 9 7 12 12 11 4 5 5 7 5 12 9 7	Open. Hide. 62 49 51 47 62 62 44 36 62 62 62 62 62 62 47 43 62 46 62 62 62 59 62 62 59 62 59 59 62 62 62 62 62 62 62 59 59 59 59 59 59 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 54 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 54 62 62 54 62 62 62 62 62 59 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 54 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 48 62 62 62 62 62 62 62 62 62 46 62 46 62 58 54 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 52 54 54 58 58 54 52 58 58 58 58 58 58 54 58 58 58 58 58 58 58 52 54 41 51 58 52 58 58 58 58 58 51 58 58 58 49 51 58 58 58 58 58 58 58 58 54 58 58 53 58 47 51 53 47 58 44 37 58 58 58 58 58 58 45 58 58 54 46 50 58 51 33 58 58 58 49 39 58 58 52 51 58 50 58 42 58 53 41 41 58 49 43 54 49 40 54 52 58 52 45 41 58 51 51 47 39 39 41 39 50 46 50 54 50 50 49 50 39 47 51 50 46 50 39 51 51 40 45 49 49 54 32 32 30 38 46 37 54 51 37 54 54 54 52 53 54 54 52 52 47 38 43 51 51 49 52 54 47 47 54 54 51 40 54 41 54 54 54 44 54 54 54 51 54 46 54 46 40 47 51 46 33 47 47 47 41 53 36 46 40 46 47 47 46 46 32 46 36 46 40 38 32 40 40 40 34 47 41 40 40 40 41 38 10 8

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_48111734_48112914
seq2: B6Ng01-178F17.b_41_1211 (reverse)

seq1  TCTACAGAGTAAGTTCCAGGACAGCCAGGGCTACAC-AGAGAAACCCTG-  48
      |||||||||||||| ||| ||||| ||  ||||||| || ||| || || 
seq2  TCTACAGAGTAAGTACCA-GACAGGCA--GCTACACAAGGGAATCCTTGT  47

seq1  TCTCAGGGGAAAAAAAAGAATAACATATATAATTGTTGGCATAATTTTTT  98
      ||||||||  |||||||| || |||||||||  || |||||| | |||||
seq2  TCTCAGGG--AAAAAAAG-ATTACATATATA--TGATGGCAT-ACTTTTT  91

seq1  TCTGTGG-AGTAATTATGAAAACTAGCTTTGAGT-AATCTATACTTTTTA  146
      ||||||| ||||  ||||||| ||||| |||||| ||||||||| |||||
seq2  TCTGTGGAAGTA--TATGAAACCTAGC-TTGAGTAAATCTATAC-TTTTA  137

seq1  GATTTTATTCTGTGATTCTTTAT--GGTTGGTATAATGGGCATTTAGGAA  194
      || |||| ||||||| |||||||  | |||||||||| ||||||||||||
seq2  GA-TTTAATCTGTGA-TCTTTATTGGTTTGGTATAAT-GGCATTTAGGAA  184

seq1  AGACAAA-GGCAGAATGGGTCCACAGGTCCTACAAAGTACAGGCAAGTGG  243
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGGGCAGAATGGGTCCACAGGTCCTACAAAGTACAGGCAAGTGG  234

seq1  CAGGAGCTCTTAAGTAACATTTCTCAAGCTCTGTGCATGTTAGTGTGATC  293
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGGAGCTCTTAAGTAACA-TTCTCAAGCTCTGTGCATGTTAGTGTGATC  283

seq1  TTGGGAGCTTAAATATCTAAGTTGACTAACATCATTATCTCTGGGGTCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGCTTAAATATCTAAGTTGACTAACATCATTATCTCTGGGGTCAT  333

seq1  AAGCCAAGATTCAGTGGGGTTGTTTGTTTGTTTGTCTGTCTGTTTGTTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGATTCAGTGGGGTTGTTTGTTTGTTTGTCTGTCTGTTTGTTTG  383

seq1  TTTAAGGCTCACAGGTATTACGGTATGAAAACCACTGGGTTATGGGGCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCTCACAGGTATTACGGTATGAAAACCACTGGGTTATGGGGCTC  433

seq1  TCCTGCAACTCCTTGCTCTTGTAAGGCTCCCTGGCTCAACTTGCACGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAACTCCTTGCTCTTGTAAGGCTCCCTGGCTCAACTTGCACGAGG  483

seq1  ACTCCACTTGCTCCCACAACTAAGCTAGATACTAAGAGAGTCAGTACTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTTGCTCCCACAACTAAGCTAGATACTAAGAGAGTCAGTACTGT  533

seq1  TCCTTGGCCTCAAATGTCAATCAGTTTAATTTAGATTTCAGAGCCATTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCCTCAAATGTCAATCAGTTTAATTTAGATTTCAGAGCCATTCA  583

seq1  AAACGGATGGTGGCTAGAAATGACTTTGGTCACTGGATGAATATAGCGAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGATGGTGGCTAGAAATGACTTTGGTCACTGGATGAATATAGCGAG  633

seq1  AAAAAGTGGGAAGAGGAGTTGGAATACCCAGGTCCTTGGCAAGATCTGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGGGAAGAGGAGTTGGAATACCCAGGTCCTTGGCAAGATCTGCC  683

seq1  ATCTTCTAGCTCTGCAGTCTTAAATAGATGACTTTTTCTTCAGAGCCTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAGCTCTGCAGTCTTAAATAGATGACTTTTTCTTCAGAGCCTTC  733

seq1  ATTTCTCTAGCTCTGACACTCTGGGTTCCTGTTAGGACGAAGTGAACTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTAGCTCTGACACTCTGGGTTCCTGTTAGGACGAAGTGAACTAA  783

seq1  AATACTTGAGAGGGACTTTGCAGAATGTGGGGTACTGTAGAAGTATCATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGAGAGGGACTTTGCAGAATGTGGGGTACTGTAGAAGTATCATT  833

seq1  TTATGTTTCAACCAATAATGTAAACACGTGCTCGGGAAAAGACAAAGCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTCAACCAATAATGTAAACACGTGCTCGGGAAAAGACAAAGCTT  883

seq1  GATGTAGTCTTGATAGGGGACTGAGCTACGGACATGGAGACCTAAGGTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGTCTTGATAGGGGACTGAGCTACGGACATGGAGACCTAAGGTCA  933

seq1  AAGAGAATTAAATAAAGGGTGAGTCCACAAGCTGAGACTAAAAGCAACTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTAAATAAAGGGTGAGTCCACAAGCTGAGACTAAAAGCAACTT  983

seq1  GACAGGCCAAACATGAAACACTCCTTTCTCAGAAATCCAGAGAAGAGACT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCCAAACATGAAACACTCCTTTCTCAGAAATCCAGAGAAGAGACT  1033

seq1  CGGAGAAAGATCTTCCCTATGCTTTTCTGATGGCTTCCAGGAATTTATCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAAAGATCTTCCCTATGCTTTTCTGATGGCTTCCAGGAATTTATCC  1083

seq1  CAAAGTAGTGATGTCCCAGAATAAATAGGTTTTCTTCTCATAATTAAGCC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGTGATGTCCCAGAATAAATAGGTTTTCTTCTCATAATTAAGCC  1133

seq1  AGAGGTTCTGGGAATGGGCTGAACACAAGGCTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCTGGGAATGGGCTGAACACAAGGCTGAATTC  1171

seq1: chr4_47984540_47985302
seq2: B6Ng01-178F17.g_64_826

seq1  GAATTCCAACTCTCCAGCAGGAGCAGATGGGGCTGAGACCAAGCAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCTCCAGCAGGAGCAGATGGGGCTGAGACCAAGCAAGAAG  50

seq1  AAAGGGCAAATGCTGGAGGGTTTTGTCTTTGTAATGGGCCCTGCTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCAAATGCTGGAGGGTTTTGTCTTTGTAATGGGCCCTGCTTCTCT  100

seq1  CTGAGATGCAGATGTAGAAAAGAAACAGAGCTAGAGAATCGCAACATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCAGATGTAGAAAAGAAACAGAGCTAGAGAATCGCAACATAGT  150

seq1  GTTTTCTACAAAATCATGATCTGAGAAAAGGATCTACAGCTGGATTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTACAAAATCATGATCTGAGAAAAGGATCTACAGCTGGATTAGGA  200

seq1  CCTGCCTCCCATCCAAAGGAGGCCCACCCAATTTCATAAGGAGAACTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCCATCCAAAGGAGGCCCACCCAATTTCATAAGGAGAACTACC  250

seq1  ATACCACCCTGACCCTGTTCAACAAGAAAAGCAGGATGTGTTCCTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACCCTGACCCTGTTCAACAAGAAAAGCAGGATGTGTTCCTAGAAA  300

seq1  AGGTAGTCTTTGACACAGTAAATTGGAACTTTGAGCTTCATTCCTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTCTTTGACACAGTAAATTGGAACTTTGAGCTTCATTCCTTTCCA  350

seq1  AGACCCTGAAGCGATGACATGTCTGTGACCATAATTTCTTAACCACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGAAGCGATGACATGTCTGTGACCATAATTTCTTAACCACATTG  400

seq1  TTAGGACATCTGTCAAGTACTTCCTCCTGTACTCGCTTGCTGATGTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACATCTGTCAAGTACTTCCTCCTGTACTCGCTTGCTGATGTATAT  450

seq1  GATGCTATTTGTTGAAATGGGGATGATGGTTACATTAATTAACTCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATTTGTTGAAATGGGGATGATGGTTACATTAATTAACTCTTTGC  500

seq1  TAAGTACAGAGGAGCCACACTACAGATATTAGCTATGCACACGTTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACAGAGGAGCCACACTACAGATATTAGCTATGCACACGTTTCATA  550

seq1  TTCAAAATGACTTTAGTGTCATAGCGCTGTGAAATAAATCCTATGGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGACTTTAGTGTCATAGCGCTGTGAAATAAATCCTATGGTGAT  600

seq1  ACCCATTTTTGTGGACGAAGAAAGTGAGTTGAGAGATTTCTTAATTCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTTTGTGGACGAAGAAAGTGAGTTGAGAGATTTCTTAATTCGCC  650

seq1  TAGAGACACTGCAGCAAGTCAGCCATGGGACAAAGGAGAAACAGCGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACTGCAGCAAGTCAGCCATGGGACAAAGGAGAAACAGCGTGAG  700

seq1  CTTCCACAACTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAACTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGT  750

seq1  GTGTGTGTGTGTG  763
      |||||||||||||
seq2  GTGTGTGTGTGTG  763

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