BAC Information

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BAC

Clone NameB6Ng01-181E05
Chromosome4 (Build37)
Map Location 20,547,250 - 20,667,360
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneWwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13, Ccnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181E05.bB6Ng01-181E05.g
ACCGA007472GA007473
length1,2271,093
definitionB6Ng01-181E05.b B6Ng01-181E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,547,250 - 20,548,497)(20,666,270 - 20,667,360)
sequence
gaattcttagatataacactaatatcactgaaaagtgtgttaagagaata
cagacaattggaaaacatctagaacaaatataatcaaaaacaatataaaa
taagaaaacactagtcccaccagataaaagataatacatctagaaattat
tagaaatttataagtaattataaatatctagagctttcagctttatttta
ttttatatttggtagtgaaatctattttttatattttttattagatatta
ttttattttatatttggcagtgaaatctattttttatattttttattaga
tattttcttcatttacatttcaaatgctatcccctttcctagtttcctct
ctgaaagttccctatatcttttccctgccctgctcctcaacccacccact
cctgtttcctggccctggcattcccctgtactggggcatataatcttcgc
aagaacaaggacctctcctcccatttatagccacctaggccatcctctac
tacatatgcaactagagacacaagctctgggggggtactgtttagttcat
attgttgttcttcctataaggttgcagacccctttagctccttgggtact
ttctctagctttcaactttattaactctatttataataataaaatatgca
aatggtagtcaaaccatatttgttgagaaacagctgtgtacatttcagtt
cctctcaaatgatttcatactaaagcctttgaagaagcaactcaaccata
ttgacatattaagagacatggagaaggaaaagagatattcattatctcag
agttagtggtgcaaatgaagtggagatgctattatcaataataactatgt
gctactgcatcaaacatgatggaaaatgcagggtttcctaaaggaatatc
tcaaaactgtagaagcagtagctaggaatatacaaagccccaagtacagt
cccagtatgacacaaaatgatgcaacaccaaagaataaaaaaataaaaaa
acctcataacattttttaaagcggaaaccactagagaggtatgaaagcaa
gacattaatgatagaacagagaaccatgatgagtgctgactgttactaga
gggagcattagaaatgatcagtaacatgcagcaactagtaagtggcacat
ttaagaagaaattgacttggccactaaaaagtcatggatatttaaaatgt
tcaggacttgaacagcatgttctgaac
gaattctgcttcccagaggatcaaaaatgtcctgtagtcagacactgttg
aactgcctcctcattttttagacgtcagcaattcaatttgtttctccatt
agttcaatactgcttcacttttttttttttttttttttactatttattag
ggtattgtttatgtcctagaaagtgatattaaatgttcaggaggtatgag
aggaggaacctctagccagatgtgcaagtcatgtgtgaattctgcaatgt
gctttgcagataagaaatgagaatgaatataggtaatgtactcttgggta
aggtaggtttcatggtgtggagtaagaagctgaataagtttagagtgaat
gaagagtcaagtccaggtgatgtcaagtttgtgtcaagcacatgtgacag
aactggtgggaagtgacaaagacaccagaacttaggtctatgcctcttca
gacacatactctatagtccagaaagcacagaagccggtttagaacctcag
tctcctctgttgatggagctagcttagctagaaagctaacctgaaagaag
tcaaaggcggtctttcctagtaactatgggaggactatactaatggccca
ttttaaaggatgctatgtattgccagtgtgttttgtgaagatggcctcac
atgttctgggggagttttcatagaatttggttttctctcagtaatgcagg
cctcttcctaatgcacactgaaccaagggagactaaattagattcagcat
tttcggtccagaggtgcatgtagttcatgcaagttgattcacaagctaga
atgcctgcactgtacatagggatcagtgatagtattacacagctggggga
aaccagaacttatttaatgcagaaggatgaagaagatttttaaggcttgt
catggagcatggtgatttggtggtttgaatgaaatcttttggggttcatg
catttgaatgcttggtccttagctagtaaactggtcaggagggattagtc
gatggtggccttgtgaaagagtgtgtcacttggcttggatggttcccaag
ctcaagccaggagtaagtcttctaacctcccctgatcagcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20547250_20548497
seq2: B6Ng01-181E05.b_44_1270

seq1  GAATTCTTAGATATAACACTAATATCACTGAAAAGTGTGTTAAGAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATATAACACTAATATCACTGAAAAGTGTGTTAAGAGAATA  50

seq1  CAGACAATTGGAAAACATCTAGAACAAATATAATCAAAAACAATATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATTGGAAAACATCTAGAACAAATATAATCAAAAACAATATAAAA  100

seq1  TAAGAAAACACTAGTCCCACCAGATAAAAGATAATACATCTAGAAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACACTAGTCCCACCAGATAAAAGATAATACATCTAGAAATTAT  150

seq1  TAGAAATTTATAAGTAATTATAAATATCTAGAGCTTTCAGCTTTATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTATAAGTAATTATAAATATCTAGAGCTTTCAGCTTTATTTTA  200

seq1  TTTTATATTTGGTAGTGAAATCTATTTTTTATATTTTTTATTAGATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTGGTAGTGAAATCTATTTTTTATATTTTTTATTAGATATTA  250

seq1  TTTTATTTTATATTTGGCAGTGAAATCTATTTTTTATATTTTTTATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATATTTGGCAGTGAAATCTATTTTTTATATTTTTTATTAGA  300

seq1  TATTTTCTTCATTTACATTTCAAATGCTATCCCCTTTCCTAGTTTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTCATTTACATTTCAAATGCTATCCCCTTTCCTAGTTTCCTCT  350

seq1  CTGAAAGTTCCCTATATCTTTTCCCTGCCCTGCTCCTCAACCCACCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTTCCCTATATCTTTTCCCTGCCCTGCTCCTCAACCCACCCACT  400

seq1  CCTGTTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATAATCTTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATAATCTTCGC  450

seq1  AAGAACAAGGACCTCTCCTCCCATTTATAGCCACCTAGGCCATCCTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAGGACCTCTCCTCCCATTTATAGCCACCTAGGCCATCCTCTAC  500

seq1  TACATATGCAACTAGAGACACAAGCTCTGGGGGGGTACTGTTTAGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGCAACTAGAGACACAAGCTCTGGGGGGGTACTGTTTAGTTCAT  550

seq1  ATTGTTGTTCTTCCTATAAGGTTGCAGACCCCTTTAGCTCCTTGGGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTCTTCCTATAAGGTTGCAGACCCCTTTAGCTCCTTGGGTACT  600

seq1  TTCTCTAGCTTTCAACTTTATTAACTCTATTTATAATAATAAAATATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCTTTCAACTTTATTAACTCTATTTATAATAATAAAATATGCA  650

seq1  AATGGTAGTCAAACCATATTTGTTGAGAAACAGCTGTGTACATTTCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGTCAAACCATATTTGTTGAGAAACAGCTGTGTACATTTCAGTT  700

seq1  CCTCTCAAATGATTTCATACTAAAGCCTTTGAAGAAGCAACTCAACCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAATGATTTCATACTAAAGCCTTTGAAGAAGCAACTCAACCATA  750

seq1  TTGACATATTAAGAGACATGGAGAAGGAAAAGAGATATTCATTATCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATTAAGAGACATGGAGAAGGAAAAGAGATATTCATTATCTCAG  800

seq1  AGTTAGTGGTGCAAATGAAGTGGAGATGCTATTATCAATAATAACTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTGGTGCAAATGAAGTGGAGATGCTATTATCAATAATAACTATGT  850

seq1  GCTACTGCATCAAACATGATGGAAAATGCAGGGTTTCCTAAGGGAATATC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTACTGCATCAAACATGATGGAAAATGCAGGGTTTCCTAAAGGAATATC  900

seq1  TCAAAACTGTAGAAGCAGTAGCTAGGAATATACAAAGCCCCAAGTACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGTAGAAGCAGTAGCTAGGAATATACAAAGCCCCAAGTACAGT  950

seq1  CCCAGTATGACACAAAATGATGCAAACAACCAAAAGAATAAAAAAATAAA  1000
      ||||||||||||||||||||||| ||||  | ||||||||||||||||||
seq2  CCCAGTATGACACAAAATGATGC-AACA--CCAAAGAATAAAAAAATAAA  997

seq1  AAAACCTCATAACATTTTTTTAAAAAGCGGAAACCACTAGAGAGGTAATG  1050
      ||||||||||||||||||||   ||||||||||||||||||||||| |||
seq2  AAAACCTCATAACATTTTTT---AAAGCGGAAACCACTAGAGAGGT-ATG  1043

seq1  AAAAGCAAGACATTAAAATGATAGAAACAAGAGAACCATGATGAGTGCTG  1100
       |||||||||||||  ||||||||||   |||||||||||||||||||||
seq2  -AAAGCAAGACATT--AATGATAGAA--CAGAGAACCATGATGAGTGCTG  1088

seq1  ACTGTTACTAGAGGGAGCATTAGAAATGAATCAGGTAGACATGCAGCAAC  1150
      |||||||||||||||||||||||||||| |||| ||| ||||||||||||
seq2  ACTGTTACTAGAGGGAGCATTAGAAATG-ATCA-GTA-ACATGCAGCAAC  1135

seq1  TAGTAAGTGGCACATTTAGGAAGAAATTGACTGGGCGAATATAAAAAAGT  1200
      |||||||||||||||||| ||||||||||||| ||| | |   |||||||
seq2  TAGTAAGTGGCACATTTAAGAAGAAATTGACTTGGCCACT---AAAAAGT  1182

seq1  CAT-GATAATTAAAATG-TCAGGACATTTGGAACAGCAATTTGTCTGAAC  1248
      ||| |||| |||||||| |||||||   | ||||||||  |  |||||||
seq2  CATGGATATTTAAAATGTTCAGGAC---TTGAACAGCA--TGTTCTGAAC  1227

seq1: chr4_20666270_20667360
seq2: B6Ng01-181E05.g_65_1157 (reverse)

seq1  CAGGCTGACAGGGGGAGGTAGAAAGAC-TACTCCTGGCTTGAGCTTTGGA  49
      ||||||||   ||||||||   ||||| |||||||||||||||||| |||
seq2  CAGGCTGATCAGGGGAGGTTAGAAGACTTACTCCTGGCTTGAGCTTGGGA  50

seq1  AACATCAAAG-CAAGTGACACATCTCTTTCAACAAGGCCA-CATCGACTA  97
      | |||| ||| ||||||||||| ||||||| ||||||||| |||||||||
seq2  ACCATCCAAGCCAAGTGACACA-CTCTTTC-ACAAGGCCACCATCGACTA  98

seq1  ATCCTTCCTGAACAGTTTAACTAGCTAAGGACCAAGCATTCAAATGCATG  147
      |||| |||||| |||||| |||||||||||||||||||||||||||||||
seq2  ATCCCTCCTGACCAGTTT-ACTAGCTAAGGACCAAGCATTCAAATGCATG  147

seq1  AA-CCCAAAAGATTTCATTCAAACCACCAAATCACCATGCTCCATGACAA  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAAGATTTCATTCAAACCACCAAATCACCATGCTCCATGACAA  197

seq1  GCCTTAAAAATCTTCTTCATCCTTCTGCATTAAATAAGTTCTGGTTT-CC  245
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCTTAAAAATCTTCTTCATCCTTCTGCATTAAATAAGTTCTGGTTTCCC  247

seq1  CCAGCTGTGTAATACTATCACTGATCCCTATGTACAGTGCAGGCATTCTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGTAATACTATCACTGATCCCTATGTACAGTGCAGGCATTCTA  297

seq1  GCTTGTGAATCAACTTGCATGAACTACATGCACCTCTGGACCGAAAATGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAATCAACTTGCATGAACTACATGCACCTCTGGACCGAAAATGC  347

seq1  TGAATCTAATTTAGTCTCCCTTGGTTCAGTGTGCATTAGGAAGAGGCCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTAATTTAGTCTCCCTTGGTTCAGTGTGCATTAGGAAGAGGCCTG  397

seq1  CATTACTGAGAGAAAACCAAATTCTATGAAAACTCCCCCAGAACATGTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGAGAGAAAACCAAATTCTATGAAAACTCCCCCAGAACATGTGA  447

seq1  GGCCATCTTCACAAAACACACTGGCAATACATAGCATCCTTTAAAATGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTTCACAAAACACACTGGCAATACATAGCATCCTTTAAAATGGG  497

seq1  CCATTAGTATAGTCCTCCCATAGTTACTAGGAAAGACCGCCTTTGACTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGTATAGTCCTCCCATAGTTACTAGGAAAGACCGCCTTTGACTTC  547

seq1  TTTCAGGTTAGCTTTCTAGCTAAGCTAGCTCCATCAACAGAGGAGACTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTAGCTTTCTAGCTAAGCTAGCTCCATCAACAGAGGAGACTGA  597

seq1  GGTTCTAAACCGGCTTCTGTGCTTTCTGGACTATAGAGTATGTGTCTGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAAACCGGCTTCTGTGCTTTCTGGACTATAGAGTATGTGTCTGAA  647

seq1  GAGGCATAGACCTAAGTTCTGGTGTCTTTGTCACTTCCCACCAGTTCTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATAGACCTAAGTTCTGGTGTCTTTGTCACTTCCCACCAGTTCTGT  697

seq1  CACATGTGCTTGACACAAACTTGACATCACCTGGACTTGACTCTTCATTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGCTTGACACAAACTTGACATCACCTGGACTTGACTCTTCATTC  747

seq1  ACTCTAAACTTATTCAGCTTCTTACTCCACACCATGAAACCTACCTTACC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAACTTATTCAGCTTCTTACTCCACACCATGAAACCTACCTTACC  797

seq1  CAAGAGTACATTACCTATATTCATTCTCATTTCTTATCTGCAAAGCACAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTACATTACCTATATTCATTCTCATTTCTTATCTGCAAAGCACAT  847

seq1  TGCAGAATTCACACATGACTTGCACATCTGGCTAGAGGTTCCTCCTCTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAATTCACACATGACTTGCACATCTGGCTAGAGGTTCCTCCTCTCA  897

seq1  TACCTCCTGAACATTTAATATCACTTTCTAGGACATAAACAATACCCTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTGAACATTTAATATCACTTTCTAGGACATAAACAATACCCTAA  947

seq1  TAAATAGTAAAAAAAAAAAAAAAAAAAAGTGAAGCAGTATTGAACTAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTAAAAAAAAAAAAAAAAAAAAGTGAAGCAGTATTGAACTAATG  997

seq1  GAGAAACAAATTGAATTGCTGACGTCTAAAAAATGAGGAGGCAGTTCAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAAATTGAATTGCTGACGTCTAAAAAATGAGGAGGCAGTTCAAC  1047

seq1  AGTGTCTGACTACAGGACATTTTTGATCCTCTGGGAAGCAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGACTACAGGACATTTTTGATCCTCTGGGAAGCAGAATTC  1093