BAC Information

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BAC

Clone NameB6Ng01-183E07
Chromosome4 (Build37)
Map Location 88,493,884 - 88,495,014
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4
Downstream geneIfna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183E07.bB6Ng01-183E07.g
ACCGA008942GA008943
length1,1161,171
definitionB6Ng01-183E07.b B6Ng01-183E07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcagtttaagatttcttctctgtggttatagcaccttttccc
tgatttttctctttcattgcatggaatgttgttctgattttatttgttat
atttatacatagtcttttagctacctgtgtctctgactatcgctttcaaa
tctttttcaagcaattcaaaactttgctctttctctcagaaatctaccag
gatcttgcacattcttggttctaaagcacctgacaaaagaaatcccagtt
gatttatactcctaacagaccagtatttgctccacagtgtctgcttggag
atcctcattttttttttccatttctcttggtgtcatttcacaggattgaa
aatccagcagaactggtcataatgttttgtgcccatctcaataaactgaa
gaatcagaaactctgccttatttcatttcctgaagcaaacagcaaaatct
ccctttttttacaagttaaatatcagtgtcattatttgtcatctatcttt
tgtgaatctcactgtagttcataatttttcagacacaaatattgtaaatt
ttggagacttatttaataattaaaataggcagtaggggagatagctgaat
caggaaagcccttgcagtaaatgaagaaatagctgattggtttctgagaa
gtcatgtaaaggccgaaggaggagtacatgcctataaccctgactctgtg
gaagaggaacagacctgtacctggaatactgtactagtcagtgttttcca
gagcacttgaatttatagaatttctatctgttactctctctatatatatg
tatatatatgaaacacgcacgtgtgtgcgtattgtgtgtgtggtattata
atgacttacaggatagggtctaaccaattcagaaaatgtctgcctatgag
cataagttcaaagaatccagtaattgttcactagggtggatttcttagct
ggcattcactatgtgccagattccaacaccattaggctctagtgcagtga
ggatggattgctggcaaggggaaagcacacagcaacagcaaagcatcttt
cttcatggacctacacaggctcagcgagctggctcatagcacagtagtct
ttcacacctcaagatc
gaattcacgcagttgaatccttctcaacagtctgtgttgtgggaacactt
tattaccaccgttccccagctgaagagttctgaatccaggctggatcctt
ctcaacagtctgtgttacgggaacacttcattaccaccgttccccagctg
aagagttctgaatccaggctggatccttctcaacagtctgttttacggga
acacttcattactatgacccgcagttctggttccggaatgagggatcttc
cttgcgccggtgatggtaaccgtcctgggttttctcgtcccaggatttct
cgtcccaggtcttcttgtcccgggatttctcgtcccagggcttctcgtcc
caggtcttctcgtcccaggttttctcgtcccaggttttctcgtcccaggt
cttctcgtcccgtcccgagtctcagcaccaactcttacacgcgttctcgc
gaccggccaggaaggacgcaacaaaccagaatcttctgcggcaaaacttt
attgcttacatcttcaggagcaagagcgcaagagagagagcaagagcaag
agagagcaagaaagcaagaaaaagaacaagaacaagaaagcaagagaaag
aacaagaacaagaaagcaagagaagagagagaaaaagcaagaacaagaga
gagagaaagaatggcaaaaccccgtcccttttaaggagaattatcctccg
cctaggacgtattactccctgattggctgcagcccatcggcccagttgtc
atcacgagaaaggcagaacacatggcgggaaaactgcccctgcacgtgtg
cagattatgtttactacttagaacacagctgtcagcgccatcttgtaatg
gcaaatgtgagggcggctcccaacacaaaaccaggggttctttgagaaga
tcaacaagatagataaaccattagccagactagccataggcacagagaaa
aaatgcaaattaacaaaatcagtataaaaagggagattataacaacggga
actgagaaatttcaaaaattattcagatcctaccacaaaagtctatactc
agcaaacttgtaattctgatgaatgaacaatttcttagacagatactaat
accaaggtaatcagaatcgattagcacctcatatccatacctgagaatga
aggcagtccatttaaacgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88493884_88495014
seq2: B6Ng01-183E07.b_47_1162 (reverse)

seq1  GATCTTTGAGGTGTG-AAGACTCACCTGTGCTATGAGCCAGGCCTTCTGC  49
      |||| |||||||||| ||||||   ||||||||||||||||  |    ||
seq2  GATC-TTGAGGTGTGAAAGACT--ACTGTGCTATGAGCCAGCTC----GC  43

seq1  TGGAAGCCTGTGTAAGTCCATGAAGGAAAGATGCTTTTGCTGTTTGCCTG  99
      ||  |||||||||| ||||||||| ||||||||| |||||||||   |||
seq2  TG--AGCCTGTGTAGGTCCATGAA-GAAAGATGC-TTTGCTGTT--GCTG  87

seq1  TGTGCTTTCCCCTTGCCAGCAATCCATTCCTTCACTGGCACTAGAGCCTA  149
      |||||||||||||||||||||||||||  | ||||| |||||||||||||
seq2  TGTGCTTTCCCCTTGCCAGCAATCCAT--CCTCACT-GCACTAGAGCCTA  134

seq1  ATGGTGTTGGAATCTGGCACATAGTGAATGCCAGCTAAGAAATCCACCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTTGGAATCTGGCACATAGTGAATGCCAGCTAAGAAATCCACCCT  184

seq1  AGTGAACAATTACTGGATTCTTTGAACTTATGCTCATAGGCAGACATTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACAATTACTGGATTCTTTGAACTTATGCTCATAGGCAGACATTTT  234

seq1  CTGAATTGGTTAGACCCTATCCTGTAAGTCATTATAATACCACACACACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGGTTAGACCCTATCCTGTAAGTCATTATAATACCACACACACA  284

seq1  ATACGCACACACGTGCGTGTTTCATATATATACATATATATAGAGAGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCACACACGTGCGTGTTTCATATATATACATATATATAGAGAGAGT  334

seq1  AACAGATAGAAATTCTATAAATTCAAGTGCTCTGGAAAACACTGACTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAGAAATTCTATAAATTCAAGTGCTCTGGAAAACACTGACTAGT  384

seq1  ACAGTATTCCAGGTACAGGTCTGTTCCTCTTCCACAGAGTCAGGGTTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTCCAGGTACAGGTCTGTTCCTCTTCCACAGAGTCAGGGTTATA  434

seq1  GGCATGTACTCCTCCTTCGGCCTTTACATGACTTCTCAGAAACCAATCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTACTCCTCCTTCGGCCTTTACATGACTTCTCAGAAACCAATCAG  484

seq1  CTATTTCTTCATTTACTGCAAGGGCTTTCCTGATTCAGCTATCTCCCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTCATTTACTGCAAGGGCTTTCCTGATTCAGCTATCTCCCCTA  534

seq1  CTGCCTATTTTAATTATTAAATAAGTCTCCAAAATTTACAATATTTGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTATTTTAATTATTAAATAAGTCTCCAAAATTTACAATATTTGTGT  584

seq1  CTGAAAAATTATGAACTACAGTGAGATTCACAAAAGATAGATGACAAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATTATGAACTACAGTGAGATTCACAAAAGATAGATGACAAATA  634

seq1  ATGACACTGATATTTAACTTGTAAAAAAAGGGAGATTTTGCTGTTTGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTGATATTTAACTTGTAAAAAAAGGGAGATTTTGCTGTTTGCTT  684

seq1  CAGGAAATGAAATAAGGCAGAGTTTCTGATTCTTCAGTTTATTGAGATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATGAAATAAGGCAGAGTTTCTGATTCTTCAGTTTATTGAGATGG  734

seq1  GCACAAAACATTATGACCAGTTCTGCTGGATTTTCAATCCTGTGAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAACATTATGACCAGTTCTGCTGGATTTTCAATCCTGTGAAATGA  784

seq1  CACCAAGAGAAATGGAAAAAAAAAATGAGGATCTCCAAGCAGACACTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGAAATGGAAAAAAAAAATGAGGATCTCCAAGCAGACACTGTG  834

seq1  GAGCAAATACTGGTCTGTTAGGAGTATAAATCAACTGGGATTTCTTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATACTGGTCTGTTAGGAGTATAAATCAACTGGGATTTCTTTTGT  884

seq1  CAGGTGCTTTAGAACCAAGAATGTGCAAGATCCTGGTAGATTTCTGAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTTTAGAACCAAGAATGTGCAAGATCCTGGTAGATTTCTGAGAG  934

seq1  AAAGAGCAAAGTTTTGAATTGCTTGAAAAAGATTTGAAAGCGATAGTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAAAGTTTTGAATTGCTTGAAAAAGATTTGAAAGCGATAGTCAG  984

seq1  AGACACAGGTAGCTAAAAGACTATGTATAAATATAACAAATAAAATCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGTAGCTAAAAGACTATGTATAAATATAACAAATAAAATCAGA  1034

seq1  ACAACATTCCATGCAATGAAAGAGAAAAATCAGGGAAAAGGTGCTATAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTCCATGCAATGAAAGAGAAAAATCAGGGAAAAGGTGCTATAAC  1084

seq1  CACAGAGAAGAAATCTTAAACTGAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  CACAGAGAAGAAATCTTAAACTGAAAGAATTC  1116