BAC Information

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BAC

Clone NameB6Ng01-187G01
Chromosome13 (Build37)4 (Build37)
Map Location 116,483,176 - 116,484,33450,513,107 - 50,513,168
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
Downstream geneLOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187G01.bB6Ng01-187G01.g
ACCGA011973GA011974
length1,158682
definitionB6Ng01-187G01.b B6Ng01-187G01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,483,176 - 116,484,334)(50,513,107 - 50,513,168)
sequence
gaattctatcttcaaatatcacagcccaaagcctgcatttttttttctca
aatgtacaggtaactttcaaccttattctgactcacatcctcttggtgtc
tatgtgtttaagttctataggtagaaatcagatcatggaagacccatatc
ccacaatatcaggatcttacttttagggaggatagctgcatagatatagg
cattggtgttatttgaagtcttgtacccaccagcaggacaggtgatcgga
gccaggtttatgtggcacaagtggccaatttcaagggtttgggttacttt
aggcagatgcatctcctcacttctcatgagcattttttctagggttagct
gaatgccctttgcaaataagtggatttggggtataaatactttagtgtct
atacagaattgatatcagtaaaaacgtagtcagctcccatgttatccaca
aggtttgaaatattgtgtctgtgaatgagaataccatcccgagattgttc
acatacacgagacacagaacagctgtgcagaaatgcctataatttagttg
ttcggtttgccattgtcttgtattaaaagctacctaatagaatttatagt
tggagaaaccttttaggcagcactctttgtattttttattaagtccaaac
tcagagaatctacttaatgtcaattttgctccctggttatactgcacagt
gtatttcactttaaatctgcaggccatgatgataaattgataattgaccc
ctaggccatgataaataaagaacccctgtttttcattagaacggtaatat
ctagtcataatggtcagaagtcttatgctaatcttcccccaagaaatgaa
caatcaagaattcaggattttaaaacatccattttaaaaaacaaactttc
caattatgagcagtaccagaaaagataattttaggagcctatgattagga
gcaccctgtagactgtgctatatgctgatcatagatattccctatctact
tgactttttaaaattatccagccaacctaacaaattgtatctgagatgca
ttctttgagatgttttgtttaggaatatatgaatttattggccattattc
ctccataggagaaaggtctgttctaaagtatcatgtagaagggtgtaaac
aaatacac

gaattctttgtttagctctgtaccccattttaatagggttatttgatttt
ctggagtccaaccttttgtgttctttgtatgtactggatattagccttgt
attggatgtgggattggtaaatatcttttcccaaactgttggctgccctt
tgtcttattgacagcatcctttgccttacagaagctttgcaattttatga
ggtcacatttgtggattcttgatcttacaacgtaagccattagtgttctg
tttaggaaattttctgctgtgcctatgtgttcaaggctttgccccacttt
ctcctctataagtttcggtgtatctggttttatgtgagagttccttgatc
cacttaaacttaatctttgtacaaggagataagaatgtgtgatttgcatt
tttctacattctgaccaccagttgaactagcatcatttgttaaaaatgct
gtcatcttccactggatcgttttagctcctttgtcaaagatcaagtaacc
atgtttggaggttcatttcttggtgttcaattctattccattgatcttcc
tgcctgtctctgtaccattaccatgcagggctttgttgttgttgctgttg
ggttttttgttttgttttgttttttgtttttgtttttgttttgttttgtt
tttaaatcactattgctctgtagttcagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116483176_116484334
seq2: B6Ng01-187G01.b_46_1203 (reverse)

seq1  GTGTATT--GTTACACC--TCTACATGAATAACCTTTAGAAACGA-CTTT  45
      |||||||   |||||||  |||||||| |||  ||||||||  || ||||
seq2  GTGTATTTGTTTACACCCTTCTACATG-ATA--CTTTAGAACAGACCTTT  47

seq1  CTCCTATGGAAGGGAT-ATGGCCATTACATTCATATATTCCTAAACAAAA  94
      ||||||||| ||| || ||||||| || ||||||||||||||||||||||
seq2  CTCCTATGG-AGGAATAATGGCCAATAAATTCATATATTCCTAAACAAAA  96

seq1  CAATCTCAAAGAATTGCATTCTCAGATACAATTTTGTTTGTTTGCTGGAT  144
      | ||||||||||| |||| |||||||||||||||  |  ||| |||||||
seq2  C-ATCTCAAAGAA-TGCA-TCTCAGATACAATTTGTTAGGTTGGCTGGAT  143

seq1  -ATTTTAAAAAGTCAAGTAGATTAGGAATATTCTATTGATCAGCATATAG  193
       |||||||||||||||||||||  |||||| |||| ||||||||||||||
seq2  AATTTTAAAAAGTCAAGTAGATAGGGAATA-TCTA-TGATCAGCATATAG  191

seq1  CACAGTCTACAGGGTGCTCCTAATCATAGGCTCCTAAAATTATCTTTTCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTACAGGGTGCTCCTAATCATAGGCTCCTAAAATTATCTTTTCT  241

seq1  GGTACTGCTCATAATTGG-AAGTTTGTTTTTT-AAATGGATGTTTTAAAA  291
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GGTACTGCTCATAATTGGAAAGTTTGTTTTTTAAAATGGATGTTTTAAAA  291

seq1  TCCCTGAATTCTTGATTGTTCATTTCTTGGGGGAAGATTAGCATAAGACT  341
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CCTGAATTCTTGATTGTTCATTTCTTGGGGGAAGATTAGCATAAGACT  340

seq1  TCTGACCATTATGACTAGATATTACCGTTCTAATGAAAAACAGGGGTTCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCATTATGACTAGATATTACCGTTCTAATGAAAAACAGGGGTTCT  390

seq1  TTATTTATCATGGCCTAGGGGTCAATTATCAATTTATCATCATGGCCTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCATGGCCTAGGGGTCAATTATCAATTTATCATCATGGCCTGC  440

seq1  AGATTTAAAGTGAAATACACTGTGCAGTATAACCAGGGAGCAAAATTGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAGTGAAATACACTGTGCAGTATAACCAGGGAGCAAAATTGAC  490

seq1  ATTAAGTAGATTCTCTGAGTTTGGACTTAATAAAAAATACAAAGAGTGCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAGATTCTCTGAGTTTGGACTTAATAAAAAATACAAAGAGTGCT  540

seq1  GCCTAAAAGGTTTCTCCAACTATAAATTCTATTAGGTAGCTTTTAATACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAGGTTTCTCCAACTATAAATTCTATTAGGTAGCTTTTAATACA  590

seq1  AGACAATGGCAAACCGAACAACTAAATTATAGGCATTTCTGCACAGCTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGGCAAACCGAACAACTAAATTATAGGCATTTCTGCACAGCTGT  640

seq1  TCTGTGTCTCGTGTATGTGAACAATCTCGGGATGGTATTCTCATTCACAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTCGTGTATGTGAACAATCTCGGGATGGTATTCTCATTCACAG  690

seq1  ACACAATATTTCAAACCTTGTGGATAACATGGGAGCTGACTACGTTTTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATATTTCAAACCTTGTGGATAACATGGGAGCTGACTACGTTTTTA  740

seq1  CTGATATCAATTCTGTATAGACACTAAAGTATTTATACCCCAAATCCACT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATCAATTCTGTATAGACACTAAAGTATTTATACCCCAAATCCACT  790

seq1  TATTTGCAAAGGGCATTCAGCTAACCCTAGAAAAAATGCTCATGAGAAGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAAAGGGCATTCAGCTAACCCTAGAAAAAATGCTCATGAGAAGT  840

seq1  GAGGAGATGCATCTGCCTAAAGTAACCCAAACCCTTGAAATTGGCCACTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGCATCTGCCTAAAGTAACCCAAACCCTTGAAATTGGCCACTT  890

seq1  GTGCCACATAAACCTGGCTCCGATCACCTGTCCTGCTGGTGGGTACAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACATAAACCTGGCTCCGATCACCTGTCCTGCTGGTGGGTACAAGA  940

seq1  CTTCAAATAACACCAATGCCTATATCTATGCAGCTATCCTCCCTAAAAGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATAACACCAATGCCTATATCTATGCAGCTATCCTCCCTAAAAGT  990

seq1  AAGATCCTGATATTGTGGGATATGGGTCTTCCATGATCTGATTTCTACCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGATATTGTGGGATATGGGTCTTCCATGATCTGATTTCTACCT  1040

seq1  ATAGAACTTAAACACATAGACACCAAGAGGATGTGAGTCAGAATAAGGTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTTAAACACATAGACACCAAGAGGATGTGAGTCAGAATAAGGTT  1090

seq1  GAAAGTTACCTGTACATTTGAGAAAAAAAAATGCAGGCTTTGGGCTGTGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTACCTGTACATTTGAGAAAAAAAAATGCAGGCTTTGGGCTGTGA  1140

seq1  TATTTGAAGATAGAATTC  1159
      ||||||||||||||||||
seq2  TATTTGAAGATAGAATTC  1158


seq1: chr4_50513107_50513168
seq2: B6Ng01-187G01.g_667_718 (reverse)

seq1  AAAAACAAAAAAATAACAAAAAAATAACAAAACAAAACAAAAAACAAAAC  50
      ||||||||      ||||||| || ||||    |||||||||||||||||
seq2  AAAAACAA------AACAAAACAAAAACA----AAAACAAAAAACAAAAC  40

seq1  AAACAAACAAAC  62
      |||  || ||||
seq2  AAAACAAAAAAC  52


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