BAC Information

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BAC

Clone NameB6Ng01-188B22
Chromosome4 (Build37)
Map Location 54,326,771 - 54,475,695
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188B22.bB6Ng01-188B22.g
ACCGA012511GA012512
length9751,162
definitionB6Ng01-188B22.b B6Ng01-188B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,326,771 - 54,327,739)(54,474,551 - 54,475,695)
sequence
gaattccagcaaatatcgaattttatactgactgccttgactaagtgtct
cttaaagttcatttattacaggctttccccaaggtggtgctattggcaag
ggttggaatctttctggggtggggactggtgggaggtccttgagttattg
agggagtgtcttgaagagcattatgggacccatctctttctggtctcttt
ttgcttcctgattcatgtcttttgctgctatgtgctgcttccctacaggc
ccagaaaaaatgggaccaattgaacataaacttggatctctgaaaactat
gagccaaagtaaatcttttctctttgtaaattaatgatctcagttatttt
gttatagtgaagaaacaccaactcacataagtaattatggttatttttat
aactgccacactacaggagggtctctgataaagtagagtatatgactgga
ttcaaacaaaaacttagatcaatataatagataaatgttattttatggag
agatgtcaaaatatagttattaaaagccactaagtaccttatttatatat
tcacttaacaagtatttattgaatacttactgtgtgccagatgttatttt
cagaacaaaagataaagttgtaaataagacaaactatatcccaactttca
tatcacttacatcctatttgtgggaaaagaaagaaggggaaaacaaccaa
gtaaatggataaaaatgatgtaacttatattatttaattttaatttttaa
aatatttttattaggtatttatttcatttacatttccaatgctatcccaa
agtcccctacacgctcccccacacacccactcccacttcttgtccctggc
gttcccctgtactgaggcatataaagtttgcatgaccaatgggcctcttt
ttccactgatgggccaactaggcaatcttctgatacatatgcagctagag
acatgagctcccgggttggggtgag

tctaatcttgaacaagtaattgagactcttagagcatgggttacatgagg
ctgattgtggtagctttgcatggctgttataagtgttgagcaaggtaatg
actgtgaagcactgagtgtttgtgtgaatattttggtggtgtttctctca
tctcactcctcttcctgagcccccattggcccagttcatgcatttctatg
gggctgctagcattaaggaaatgaaagaattttcacctgatgtttgagat
ttgaatacctgcctcttggcaaagtagaaatcactcaaaagggtacgagt
atgaatctatgtaagcctctcttctacttttttgaatccaaagtggaatc
cctaggctgaaatgaagagatcactgaggagaaaagtagatctaagagac
atagttggcagatgcctagaaaaacgcaccccataatatcactggacttt
tatgcattgagggttggctatggaagaaattatgtataccccagacttat
ctgcagaatagaagagaaaaataaatgggcaatttgttcaaagttgatgg
gagggactggaaaaggcaacggaaacagaagctatgatgcttctgtgtct
ctagtacacaaggctggcaaaaccacagaaattatcccacagaatgctgc
agacaaaggaattccagattaacagctgaaacaaacaaacaaacaaacaa
acaaacaaacaaacagactgaaggagtccttgagagctgggaaagttaag
ataggccagaggacaaggatctggaaatgtaaatatcccaacagacatgg
gcctggagagcgtacactgaagaccaaatgccccccaaatccaggccaca
atgatatggtaacttccccaaatttggacctacttcagatagaaaggggg
tgcaatcctccagggccacatatccacagatctccattgtcctgaactct
ggaaacagaacctaaagaggattcccattaaagttctgaaacctttctca
tcttataattggtgttctagacaagagatgtattacctaacaagaatttg
ttgacaagcaagttgaaactgaaaactggacgaaacctattgccttttta
cctttagaggtaataggttaaatttctgaatatgtagaaccaatcttcac
aggcacacctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_54326771_54327739
seq2: B6Ng01-188B22.b_48_1022

seq1  GAATTCCAGCAAATATCGAATTTTATACTGACTGCCTTGACTAAGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAAATATCGAATTTTATACTGACTGCCTTGACTAAGTGTCT  50

seq1  CTTAAAGTTCATTTATTACAGGCTTTCCCCAAGGTGGTGCTATTGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGTTCATTTATTACAGGCTTTCCCCAAGGTGGTGCTATTGGCAAG  100

seq1  GGTTGGAATCTTTCTGGGGTGGGGACTGGTGGGAGGTCCTTGAGTTATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAATCTTTCTGGGGTGGGGACTGGTGGGAGGTCCTTGAGTTATTG  150

seq1  AGGGAGTGTCTTGAAGAGCATTATGGGACCCATCTCTTTCTGGTCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGTCTTGAAGAGCATTATGGGACCCATCTCTTTCTGGTCTCTTT  200

seq1  TTGCTTCCTGATTCATGTCTTTTGCTGCTATGTGCTGCTTCCCTACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTGATTCATGTCTTTTGCTGCTATGTGCTGCTTCCCTACAGGC  250

seq1  CCAGAAAAAATGGGACCAATTGAACATAAACTTGGATCTCTGAAAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAAATGGGACCAATTGAACATAAACTTGGATCTCTGAAAACTAT  300

seq1  GAGCCAAAGTAAATCTTTTCTCTTTGTAAATTAATGATCTCAGTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAGTAAATCTTTTCTCTTTGTAAATTAATGATCTCAGTTATTTT  350

seq1  GTTATAGTGAAGAAACACCAACTCACATAAGTAATTATGGTTATTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTGAAGAAACACCAACTCACATAAGTAATTATGGTTATTTTTAT  400

seq1  AACTGCCACACTACAGGAGGGTCTCTGATAAAGTAGAGTATATGACTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCACACTACAGGAGGGTCTCTGATAAAGTAGAGTATATGACTGGA  450

seq1  TTCAAACAAAAACTTAGATCAATATAATAGATAAATGTTATTTTATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAAAACTTAGATCAATATAATAGATAAATGTTATTTTATGGAG  500

seq1  AGATGTCAAAATATAGTTATTAAAAGCCACTAAGTACCTTATTTATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAAAATATAGTTATTAAAAGCCACTAAGTACCTTATTTATATAT  550

seq1  TCACTTAACAAGTATTTATTGAATACTTACTGTGTGCCAGATGTTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAACAAGTATTTATTGAATACTTACTGTGTGCCAGATGTTATTTT  600

seq1  CAGAACAAAAGATAAAGTTGTAAATAAGACAAACTATATCCCAACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAAAGATAAAGTTGTAAATAAGACAAACTATATCCCAACTTTCA  650

seq1  TATCACTTACATCCTATTTGTGGGAAAAGAAAGAAGGGGAAAACAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTACATCCTATTTGTGGGAAAAGAAAGAAGGGGAAAACAACCAA  700

seq1  GTAAATGGATAAAAATGATGTAACTTATATTATTTAATTTTAATTTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGATAAAAATGATGTAACTTATATTATTTAATTTTAATTTTTAA  750

seq1  AATATTTTTATTAGGTATTTATTTCATTTACATTTCCAATGCTATCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTATTAGGTATTTATTTCATTTACATTTCCAATGCTATCCCAA  800

seq1  AGTCCCCTACACGCTCCCCCACACACCCACTCCCACTTCTTGTCCCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTACACGCTCCCCCACACACCCACTCCCACTTCTTGTCCCTGGC  850

seq1  GTTCCCCTGTACTGAGGCATATAAAGTTTGCATGACCAATGGGCCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTGTACTGAGGCATATAAAGTTTGCATGACCAATGGGCCTCTTT  900

seq1  TTCCACTGAT-GGCCAACTAGGCAATCTTCTGATACATATGCAGCTAGAG  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGATGGGCCAACTAGGCAATCTTCTGATACATATGCAGCTAGAG  950

seq1  ACATGAGCTCCGGGGGTGGG-----  969
      ||||||||||| ||| ||||     
seq2  ACATGAGCTCCCGGGTTGGGGTGAG  975


seq1: chr4_54474551_54475695
seq2: B6Ng01-188B22.g_76_1237 (reverse)

seq1  AGAG--GTGGCTGTG-AGA-TGGTTCTACATAATTTAAGAAAATT-ACCT  45
      ||||  ||| ||||| ||| ||||||||||||  || ||||| || ||||
seq2  AGAGGTGTGCCTGTGAAGATTGGTTCTACATA--TTCAGAAATTTAACCT  48

seq1  ATTAC--CTTAAGGT-AAAAGCAAATAG--TTCGTCCAGTTTTCAGTTCA  90
      |||||  || ||||| |||||  |||||  ||||||||||||||||||  
seq2  ATTACCTCTAAAGGTAAAAAGGCAATAGGTTTCGTCCAGTTTTCAGTTTC  98

seq1  AACTTGC-TGTC-ACAAATTCT--GTAGGT-ATACATCTC-TGTCTAGAA  134
      ||||||| |||| |||||||||   ||||| ||||||||| |||||||||
seq2  AACTTGCTTGTCAACAAATTCTTGTTAGGTAATACATCTCTTGTCTAGAA  148

seq1  CACCAA-TAT-AGATGAGAAAGGTTTTCAGAACTTTAAT-GGAATCCTCT  181
      |||||| ||| |||||||||||| ||||||||||||||| ||||||||||
seq2  CACCAATTATAAGATGAGAAAGG-TTTCAGAACTTTAATGGGAATCCTCT  197

seq1  TTAGGTTCTGTTTCCAGAGTTCAGGACAATGGAGATCTGTGGATATGTGG  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTGTTTCCAGAGTTCAGGACAATGGAGATCTGTGGATATGTGG  247

seq1  CCCTGGAGGATTGCACCCCC-TTCTATCTGAAGTAGGTCCAAATTTGGGG  280
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTGGAGGATTGCACCCCCTTTCTATCTGAAGTAGGTCCAAATTTGGGG  297

seq1  AAGTTACCATATCATTGTGGCCTGGATTTGGGGGGCATTTGGTCTTCAGT  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACCATATCATTGTGGCCTGGATTTGGGGGGCATTTGGTCTTCAGT  347

seq1  GTACGCTCTCCAGGCCCATGTCTGTTGGGATATTTACATTTCCAGATCCT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCTCTCCAGGCCCATGTCTGTTGGGATATTTACATTTCCAGATCCT  397

seq1  TGTCCTCTGGCCTATCTTAACTTTCCCAGCTCTCAAGGACTCCTTCAGTC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTGGCCTATCTTAACTTTCCCAGCTCTCAAGGACTCCTTCAGTC  447

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCAGCTGTTAATCT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCAGCTGTTAATCT  497

seq1  GGAATTCCTTTGTCTGCAGCATTCTGTGGGATAATTTCTGTGGTTTTGCC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTTTGTCTGCAGCATTCTGTGGGATAATTTCTGTGGTTTTGCC  547

seq1  AGCCTTGTGTACTAGAGACACAGAAGCATCATAGCTTCTGTTTCCGTTGC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTGTACTAGAGACACAGAAGCATCATAGCTTCTGTTTCCGTTGC  597

seq1  CTTTTCCAGTCCCTCCCATCAACTTTGAACAAATTGCCCATTTATTTTTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGTCCCTCCCATCAACTTTGAACAAATTGCCCATTTATTTTTC  647

seq1  TCTTCTATTCTGCAGATAAGTCTGGGGTATACATAATTTCTTCCATAGCC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATTCTGCAGATAAGTCTGGGGTATACATAATTTCTTCCATAGCC  697

seq1  AACCCTCAATGCATAAAAGTCCAGTGATATTATGGGGTGCGTTTTTCTAG  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCAATGCATAAAAGTCCAGTGATATTATGGGGTGCGTTTTTCTAG  747

seq1  GCATCTGCCAACTATGTCTCTTAGATCTACTTTTCTCCTCAGTGATCTCT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCCAACTATGTCTCTTAGATCTACTTTTCTCCTCAGTGATCTCT  797

seq1  TCATTTCAGCCTAGGGATTCCACTTTGGATTCAAAAAAGTAGAAGAGAGG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAGCCTAGGGATTCCACTTTGGATTCAAAAAAGTAGAAGAGAGG  847

seq1  CTTACATAGATTCATACTCGTACCCTTTTGAGTGATTTCTACTTTGCCAA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATAGATTCATACTCGTACCCTTTTGAGTGATTTCTACTTTGCCAA  897

seq1  GAGGCAGGTATTCAAATCTCAAACATCAGGTGAAAATTCTTTCATTTCCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTATTCAAATCTCAAACATCAGGTGAAAATTCTTTCATTTCCT  947

seq1  TAATGCTAGCAGCCCCATAGAAATGCATGAACTGGGCCAATGGGGGCTCA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAGCAGCCCCATAGAAATGCATGAACTGGGCCAATGGGGGCTCA  997

seq1  GGAAGAGGAGTGAGATGAGAGAAACACCACCAAAATATTCACACAAACAC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAGTGAGATGAGAGAAACACCACCAAAATATTCACACAAACAC  1047

seq1  TCAGTGCTTCACAGTCATTACCTTGCTCAACACTTATAACAGCCATGCAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTTCACAGTCATTACCTTGCTCAACACTTATAACAGCCATGCAA  1097

seq1  AGCTACCACAATCAGCCTCATGTAACCCATGCTCTAAGAGTCTCAATTAC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCACAATCAGCCTCATGTAACCCATGCTCTAAGAGTCTCAATTAC  1147

seq1  TTGTTCAAGATTAGA  1145
      |||||||||||||||
seq2  TTGTTCAAGATTAGA  1162


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