BAC Information

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BAC

Clone NameB6Ng01-192O03
Chromosome4 (Build37)
Map Location 154,784,546 - 154,935,234
singlet/doubletdoublet
Overlap gene2010015L04Rik, Tmem52, Gnb1
Upstream genePrdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd
Downstream geneNadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192O03.bB6Ng01-192O03.g
ACCGA016005GA016006
length1,1511,057
definitionB6Ng01-192O03.b B6Ng01-192O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,784,546 - 154,785,724)(154,934,168 - 154,935,234)
sequence
gaattcaagttggagcactttgttatggcaaccctggaaaactcctgtga
caagtgagagtttctgcagccctctctaaggagagggctgtcctctcaga
agaaaagatagaacaggcagtacagtggccccagggacacccaacgtccc
aatcctccgaaccagtaaaaacataacgttccatggctaagaggaactga
ggcggcccatcagcttcctttgagatggaagaactatcttgggtcatctc
attggaagagggaggcaggagagatcaccaaaggctacggcaggtcgggc
tcagctaacactgcagatttgaacacgttagatgaagtcaggtgccaagg
ggcaaaggcagctttagacagaaaatgaaaagccaagaaagtagacacac
cctctctggtttccaagaaggtcacacagctttgctgatgcaggacaacc
aagtcctaattcataaggacgagcctcaaggtgctgtgagactgaaaaga
agagaaagacaaatctagggttataccaagtgcagtttgctgctaagcgt
tgggggacaggaagtatgtaagtatgggcctgaatgtcagcagaccaaat
gaacccaagtgtgagtcaaaatctttgggtcaaaatgaagagtgtatttg
tggagtagaacggagagccaaacttgctgggtgataatggcgcacacctt
caatcacttgggaggcagaggcaggccatctctgtgagtttgaggccagc
ctggtgagtgccggggttaaactaagaaaccctatctcaaaataaaacca
gagcagactcattctttctgtaatctgcttgtttatcttaaaataatatc
tatagtgacaaattgggagttttggtttcttaaaaaaaaaaaaaaaaaaa
cacaggaatagccgggcgtggtggcacacttgggaggcagaggcaggtgg
atttctgagttcaggccagcctggtctacagagtgagttcagacagcagg
ctatacagagaactttgttctcgaaacaaaaactagcagtaaaaaaaaaa
acccaaaaccccagatattaggaattattttgtctaatctagtgtgaggt
acggctgctccgaactgccacatatagctgacttgattggcctaggctct
a
gaattcctgccagactattcatgggttcccagagcaaacaccttgtccca
agatcaccctgtgtgaagaggcagaggtgaaagactgctggctgctcttg
gatggtgaggggttggactggtctaacagaatgctggtggtgtcaggttg
tactgagaatacaggagcacagtgagagcggcaggagagagtaggcgcca
aaggaaacggtggacggcacaagctggacccggctggcctttcatcagga
ttccagcctctagtatttggcaaataaatgaggtggctccctttacaggc
cagaagaattggaatcctggggtcatggaatggcatcagcccatacgctg
gaggaaaatgatgagacatggtgggtctaaaatatagcagcagcccctta
tctgcctgtgtgcacttcaacaggtgtacttccaccatgggcagcaacac
acagagcacacgggcacctcagcttccagagcatgagtggtatttaatgg
tggatgtagatgtgtaagcctgagcatttgtgaagcctgcacgctctttg
gtcattaatactgcccacatatccaaagtggacatgtcttccatgactgc
ttgttaaacaagtgggcagcggcctggatgttggttgagaagtaggacag
gcctgagacacagacctaccccagtccatttggggcctgcttgttgtcag
gtaggttagaagcagtttaagacatgtactcccagagaatttgaagttag
ggtcagagcttcaccttctagatcagaaggacctcaaatgttttgcattc
tcagtggaagttgaggtaggtaaagacttgcaaaatgtgtgtgttgaaaa
atacatttatttcaaggagactaggagaggattagactaggccatcccat
cccatctgctggacctgcccatcacacacatgtgtggtattcaggggcca
ccgctgacctggatggattgttgcttaccattgtcaaacaaaggtgctgg
gcagtcatgtttaaggggattgtgagcttgagatcagttggtttataatc
tcaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154784546_154785724
seq2: B6Ng01-192O03.b_44_1194

seq1  GAATTCAAGTTGGAGCACTTTGTTATGGCAACCCTGGAAAACTCCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTGGAGCACTTTGTTATGGCAACCCTGGAAAACTCCTGTGA  50

seq1  CAAGTGAGAGTTTCTGCAGCCCTCTCTAAGGAGAGGGCTGTCCTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAGAGTTTCTGCAGCCCTCTCTAAGGAGAGGGCTGTCCTCTCAGA  100

seq1  AGAAAAGATAGAACAGGCAGTACAGTGGCCCCAGGGACACCCAACGTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATAGAACAGGCAGTACAGTGGCCCCAGGGACACCCAACGTCCC  150

seq1  AATCCTCCGAACCAGTAAAAACATAACGTTCCATGGCTAAGAGGAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCGAACCAGTAAAAACATAACGTTCCATGGCTAAGAGGAACTGA  200

seq1  GGCGGCCCATCAGCTTCCTTTGAGATGGAAGAACTATCTTGGGTCATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCCATCAGCTTCCTTTGAGATGGAAGAACTATCTTGGGTCATCTC  250

seq1  ATTGGAAGAGGGAGGCAGGAGAGATCACCAAAGGCTACGGCAGGTCGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGAGGGAGGCAGGAGAGATCACCAAAGGCTACGGCAGGTCGGGC  300

seq1  TCAGCTAACACTGCAGATTTGAACACGTTAGATGAAGTCAGGTGCCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAACACTGCAGATTTGAACACGTTAGATGAAGTCAGGTGCCAAGG  350

seq1  GGCAAAGGCAGCTTTAGACAGAAAATGAAAAGCCAAGAAAGTAGACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGCAGCTTTAGACAGAAAATGAAAAGCCAAGAAAGTAGACACAC  400

seq1  CCTCTCTGGTTTCCAAGAAGGTCACACAGCTTTGCTGATGCAGGACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGGTTTCCAAGAAGGTCACACAGCTTTGCTGATGCAGGACAACC  450

seq1  AAGTCCTAATTCATAAGGACGAGCCTCAAGGTGCTGTGAGACTGAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTAATTCATAAGGACGAGCCTCAAGGTGCTGTGAGACTGAAAAGA  500

seq1  AGAGAAAGACAAATCTAGGGTTATACCAAGTGCAGTTTGCTGCTAAGCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGACAAATCTAGGGTTATACCAAGTGCAGTTTGCTGCTAAGCGT  550

seq1  TGGGGGACAGGAAGTATGTAAGTATGGGCCTGAATGTCAGCAGACCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACAGGAAGTATGTAAGTATGGGCCTGAATGTCAGCAGACCAAAT  600

seq1  GAACCCAAGTGTGAGTCAAAATCTTTGGGTCAAAATGAAGAGTGTATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAGTGTGAGTCAAAATCTTTGGGTCAAAATGAAGAGTGTATTTG  650

seq1  TGGAGTAGAACGGAGAGCCAAACTTGCTGGGTGATAATGGCGCACACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGAACGGAGAGCCAAACTTGCTGGGTGATAATGGCGCACACCTT  700

seq1  CAATCACTTGGGAGGCAGAGGCAGGCCATCTCTGTGAGTTTGAGGCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACTTGGGAGGCAGAGGCAGGCCATCTCTGTGAGTTTGAGGCCAGC  750

seq1  CTGGTGAGTGCCGGGGTTAAACTAAGAAACCCTATCTCAAAATAAAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGTGCCGGGGTTAAACTAAGAAACCCTATCTCAAAATAAAACCA  800

seq1  GAGCAGACTCATTCTTTCTGTAATCTGCTTGTTTATCTTAAAATAATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACTCATTCTTTCTGTAATCTGCTTGTTTATCTTAAAATAATATC  850

seq1  TATAGTGACAAATTGGGAGTTTTGGTTTCTTAAAAAAAAAAAAAAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATAGTGACAAATTGGGAGTTTTGGTTTCTTAAAAAAAAAAAAAAAAAAA  900

seq1  CACAGGAATAGCCGGGCGTGGTGGCACACTTGGGAGGCAGAGGCAGGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATAGCCGGGCGTGGTGGCACACTTGGGAGGCAGAGGCAGGTGG  950

seq1  ATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  1000
      |||||||||||| ||||||||||||||||||||||||||||   ||||||
seq2  ATTTCTGAGTTC-AGGCCAGCCTGGTCTACAGAGTGAGTTC--AGACAGC  997

seq1  CAGGGCTATACAGAGAAACTTTG-TCTCGAAAAACAAAAAAAACCAAACC  1049
         |||||||||||| ||||||| |||||  |||||||||  | |     
seq2  --AGGCTATACAGAG-AACTTTGTTCTCG--AAACAAAAACTAGC-----  1037

seq1  AAGTAAAAAAAAAAAACCCAAAAACCCACAGGAATATTTAAGAATATATT  1099
       ||| |||||||||||||||||| ||||     ||| ||| |||| || |
seq2  -AGT-AAAAAAAAAAACCCAAAACCCCA----GATA-TTAGGAAT-TA-T  1078

seq1  TTTGTCTTAATCCTAGGTGTGAGGTACGGGGCTGCTTCAGACTGCCCACC  1149
      |||||| |||| ||| |||||||||||  ||||||| |  ||||||    
seq2  TTTGTC-TAAT-CTA-GTGTGAGGTAC--GGCTGCTCCGAACTGCCACAT  1123

seq1  ATAGCTGACTATGATTTGCCTCATGCTCTA  1179
      |||||||||| ||||| |||| | ||||||
seq2  ATAGCTGACT-TGATTGGCCT-AGGCTCTA  1151

seq1: chr4_154934168_154935234
seq2: B6Ng01-192O03.g_65_1121 (reverse)

seq1  AATTTTAAGATTATAAAACATAACTGATCTTCAGGCTCAC-ATCCCC-TA  48
       | ||| |||||||||| |  |||||||| ||| |||||| |||||| ||
seq2  -AATTTGAGATTATAAACC--AACTGATC-TCAAGCTCACAATCCCCTTA  46

seq1  AACATTGACTGGCCCCAGCCACCTTGTTTGGACAATGGTAAGCAAACAAA  98
      |||| ||||||  ||||| ||||||  || |||||||||||||||   ||
seq2  AACA-TGACTG--CCCAG-CACCTTTGTTTGACAATGGTAAGCAA--CAA  90

seq1  TCCATCCAGGGTCAGCGGTGGCCCCTG-ATACCACACATTGTGGTGTGAT  147
      |||||||| |||||||||||||||||| |||||||||| ||| |||||||
seq2  TCCATCCA-GGTCAGCGGTGGCCCCTGAATACCACACA-TGT-GTGTGAT  137

seq1  GGGCAGGTCCAGCAGATGGGATGGGATGGCCTAGTCTAATCCTCTCCTAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTCCAGCAGATGGGATGGGATGGCCTAGTCTAATCCTCTCCTAG  187

seq1  TCTCCTTGAAATAAATGTATTTTTCAACACACACATTTTGCAAGTCTTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGAAATAAATGTATTTTTCAACACACACATTTTGCAAGTCTTTA  237

seq1  CCTACCTCAACTTCCACTGAGAATGCAAAACATTTGAGGTCCTTCTGATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCAACTTCCACTGAGAATGCAAAACATTTGAGGTCCTTCTGATC  287

seq1  TAGAAGGTGAAGCTCTGACCCTAACTTCAAATTCTCTGGGAGTACATGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGTGAAGCTCTGACCCTAACTTCAAATTCTCTGGGAGTACATGTC  337

seq1  TTAAACTGCTTCTAACCTACCTGACAACAAGCAGGCCCCAAATGGACTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGCTTCTAACCTACCTGACAACAAGCAGGCCCCAAATGGACTGG  387

seq1  GGTAGGTCTGTGTCTCAGGCCTGTCCTACTTCTCAACCAACATCCAGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTCTGTGTCTCAGGCCTGTCCTACTTCTCAACCAACATCCAGGCC  437

seq1  GCTGCCCACTTGTTTAACAAGCAGTCATGGAAGACATGTCCACTTTGGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCACTTGTTTAACAAGCAGTCATGGAAGACATGTCCACTTTGGAT  487

seq1  ATGTGGGCAGTATTAATGACCAAAGAGCGTGCAGGCTTCACAAATGCTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCAGTATTAATGACCAAAGAGCGTGCAGGCTTCACAAATGCTCA  537

seq1  GGCTTACACATCTACATCCACCATTAAATACCACTCATGCTCTGGAAGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACACATCTACATCCACCATTAAATACCACTCATGCTCTGGAAGCT  587

seq1  GAGGTGCCCGTGTGCTCTGTGTGTTGCTGCCCATGGTGGAAGTACACCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCCCGTGTGCTCTGTGTGTTGCTGCCCATGGTGGAAGTACACCTG  637

seq1  TTGAAGTGCACACAGGCAGATAAGGGGCTGCTGCTATATTTTAGACCCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGCACACAGGCAGATAAGGGGCTGCTGCTATATTTTAGACCCAC  687

seq1  CATGTCTCATCATTTTCCTCCAGCGTATGGGCTGATGCCATTCCATGACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCATCATTTTCCTCCAGCGTATGGGCTGATGCCATTCCATGACC  737

seq1  CCAGGATTCCAATTCTTCTGGCCTGTAAAGGGAGCCACCTCATTTATTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATTCCAATTCTTCTGGCCTGTAAAGGGAGCCACCTCATTTATTTG  787

seq1  CCAAATACTAGAGGCTGGAATCCTGATGAAAGGCCAGCCGGGTCCAGCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACTAGAGGCTGGAATCCTGATGAAAGGCCAGCCGGGTCCAGCTT  837

seq1  GTGCCGTCCACCGTTTCCTTTGGCGCCTACTCTCTCCTGCCGCTCTCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGTCCACCGTTTCCTTTGGCGCCTACTCTCTCCTGCCGCTCTCACT  887

seq1  GTGCTCCTGTATTCTCAGTACAACCTGACACCACCAGCATTCTGTTAGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTGTATTCTCAGTACAACCTGACACCACCAGCATTCTGTTAGAC  937

seq1  CAGTCCAACCCCTCACCATCCAAGAGCAGCCAGCAGTCTTTCACCTCTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAACCCCTCACCATCCAAGAGCAGCCAGCAGTCTTTCACCTCTGC  987

seq1  CTCTTCACACAGGGTGATCTTGGGACAAGGTGTTTGCTCTGGGAACCCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACACAGGGTGATCTTGGGACAAGGTGTTTGCTCTGGGAACCCAT  1037

seq1  GAATAGTCTGGCAGGAATTC  1067
      ||||||||||||||||||||
seq2  GAATAGTCTGGCAGGAATTC  1057