BAC Information

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BAC

Clone NameB6Ng01-193H13
Chromosome4 (Build37)
Map Location 28,157,951 - 28,318,895
singlet/doubletdoublet
Overlap geneLOC100040735, LOC230044
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842
Downstream geneLOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H13.bB6Ng01-193H13.g
ACCGA016433GA016434
length1,1701,138
definitionB6Ng01-193H13.b B6Ng01-193H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,317,719 - 28,318,895)(28,157,951 - 28,159,066)
sequence
gaattcagaagcagtgcaaaaatctaatcaaatcactgcctgtggtcacc
tggcatcaagtgccccattgcagggatggattttgggaactgagttgttc
ccataagagaacagtatgatttacatgaggaatttatggacttagaaaaa
gggcagctgttctgaacatcaatgggcagcctgaagaaaaagaatgacaa
gctaaaatccttgaattctaggatcattacactgaataaaatccagggag
tttttaggatcaagataaaagagtctcttatctttggacgttgcttcagg
gactgaactggcaaaaaagaaagaaaaaaagttctttggaatagggaggt
gaattcagtgctttttatcccatataaaaattagagtactggtgaggaaa
tagtttatgggcacacaaagcaaattcccactgctatctcattgttactg
aagaacacactgaaaatcttccttataccttctcacaaaggcagtgatag
tcacttagcatgttaagaaatccttttggaatggaaaggaaagcacttcc
tggagatgctttgatatagataccaagcacatcctcacctacttcactta
tagggagggcattgtaatcctttaaaactaactagaagacttgtggtact
catggagaaaactaatgccattgatatttgtgcgtgtagagcttgaaagt
agtttcacactaccttaagtaacaatctttttatggtaaacagagtcagt
atgcttatatattgaaataaataaacaaacaaacaaaaccagaactgagg
aattaatgagtagatatttgtaggctcaggtttaaggaatattcattttg
tagcttcatattcccataatatcaggctaacaatggttaggtgtagaaga
gaagctgatttcccttcctccattccagaaaatcctaagcacttcacgta
atgaaacacccaggctcctgatgaaaaagggtagaggtatctattggtat
tagtggagtctctattagctatagtcacaggattcctccttaactagtta
gtcacatggatcttcccaaggacctaagcttggacttcttgattcacaat
taatttatcatgcagtgaatacattctaacctacttgtgatttactgagc
agctaattttttctcagaca

gaattctttgtttagctatgtacctcattttttgtaaatattttgtactt
gctctttgtatatattggatattattactctgtcggatgtagatttatta
cagatctttacccaatatttgggttgccattttgtcctattgacagtgtc
ctttgacttacagaagctctgaaatttcagagttctctaaggagcaaaat
ttaattatgagtcatgatacaataatcacattgcagtatttaagtactaa
gacttcagtgatttgaagtctgtacagtcaatcattacctttggtatgtt
tacttgccagtagacccattaaataaaatactttgaagttcttgtaataa
atatgtttttataaatatttgttatgcccccaaataaagtcaaattaatt
gagaaaatctcaagtatattattatatagtataattgttccaccattcac
ccaataatgtttgtagaacacaggtttacactttacagtattttctatgc
tatcaaaatataaaatattaatatcaatttaatattgcacaattttaatg
aatactgacaaataagaacaaaataaaacatttctcttacccaaccctta
cccatattaagtccattctcttaccttgcaaagtcgcagtgcccaaatta
cttactatctgtcttctcaactatttccttcctgattccaccttcacaag
aatagatttgagtaactgctttcattacttatcccaaatagtgtacattc
aagatgtcaatttacttcttaaatttgttcaggggaacaaaagaaaggtt
ggagattattttttttcatgccaataccaaactataatatttcatgagca
tgcttatttcacatgggtccaacatcacaatcatgaattttaacactcaa
gatctaacacattgtttattcttcagaacttaatacttcaacattctttc
aattgcctacttacaaatatttttttatgttttttggagagtattggcta
aagttgaatctttctttaacacatggatatccatccttgccttcagtctc
caaggtgctggagcttaacaagttggaggtactgtcctttatcatcacca
ttcatcctttttgaatttattggtatttacagtccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28317719_28318895
seq2: B6Ng01-193H13.b_46_1215 (reverse)

seq1  TGTCTGAGAAAAAAATTAGGGCTTCTCTAGTAAAATAAAAACAAGGTAGT  50
      |||||||| |||||||||  ||| ||| ||||||  | ||     |||| 
seq2  TGTCTGAG-AAAAAATTA--GCTGCTC-AGTAAATCACAA-----GTAGG  41

seq1  TTAGAATGTTATCAACTGGCATGATAATTTAATGGTTTAAATTCAAG-AG  99
      |||||||| |||  ||| ||||||||| ||||| ||    | ||||| ||
seq2  TTAGAATG-TATTCACT-GCATGATAAATTAATTGT---GAATCAAGAAG  86

seq1  TCCAAGTTTAGATCTTTGGGAAGAT-CATGTTGACTAACTAG-TAAGGA-  146
      |||||| |||| || |||||||||| |||| ||||||||||| |||||| 
seq2  TCCAAGCTTAGGTCCTTGGGAAGATCCATG-TGACTAACTAGTTAAGGAG  135

seq1  GAATCCTGTGACTATA-CTAAT--AGACT-CACTAATACCAATAGATAAC  192
      |||||||||||||||| |||||  ||||| ||||||||||||||||| ||
seq2  GAATCCTGTGACTATAGCTAATAGAGACTCCACTAATACCAATAGAT-AC  184

seq1  CTCTA-CCTTTTTCATCAGGAGCCTGGTTGTTTCATTACGTG-AGTGCTT  240
      ||||| ||||||||||||||||||||| |||||||||||||| |||||||
seq2  CTCTACCCTTTTTCATCAGGAGCCTGGGTGTTTCATTACGTGAAGTGCTT  234

seq1  AGGATTTTCTGGAATGGAGG-AGGGAAATCAGCTTCTCTTCTACACCTAA  289
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGATTTTCTGGAATGGAGGAAGGGAAATCAGCTTCTCTTCTACACCTAA  284

seq1  CCATTGTTAGCCTGATATTATGGGAATATGAAGCCTACAAAATGAATATT  339
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCATTGTTAGCCTGATATTATGGGAATATGAAG-CTACAAAATGAATATT  333

seq1  CCTTAAACCCTGAGCCTACAAATATCTACTCATTAATTCCTCAGTTCTGG  389
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAA-CCTGAGCCTACAAATATCTACTCATTAATTCCTCAGTTCTGG  382

seq1  TTTTGTTTGTTTGTTTATTTATTTCAATATATAAGCATACTGACTCTGTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTATTTATTTCAATATATAAGCATACTGACTCTGTT  432

seq1  TACCATAAAAAGATTGTTACTTAAGGTAGTGTGAAACTACTTTCAAGCTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAAAAAGATTGTTACTTAAGGTAGTGTGAAACTACTTTCAAGCTC  482

seq1  TACACGCACAAATATCAATGGCATTAGTTTTCTCCATGAGTACCACAAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCACAAATATCAATGGCATTAGTTTTCTCCATGAGTACCACAAGT  532

seq1  CTTCTAGTTAGTTTTAAAGGATTACAATGCCCTCCCTATAAGTGAAGTAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTTAGTTTTAAAGGATTACAATGCCCTCCCTATAAGTGAAGTAG  582

seq1  GTGAGGATGTGCTTGGTATCTATATCAAAGCATCTCCAGGAAGTGCTTTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGTGCTTGGTATCTATATCAAAGCATCTCCAGGAAGTGCTTTC  632

seq1  CTTTCCATTCCAAAAGGATTTCTTAACATGCTAAGTGACTATCACTGCCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTCCAAAAGGATTTCTTAACATGCTAAGTGACTATCACTGCCT  682

seq1  TTGTGAGAAGGTATAAGGAAGATTTTCAGTGTGTTCTTCAGTAACAATGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAAGGTATAAGGAAGATTTTCAGTGTGTTCTTCAGTAACAATGA  732

seq1  GATAGCAGTGGGAATTTGCTTTGTGTGCCCATAAACTATTTCCTCACCAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAGTGGGAATTTGCTTTGTGTGCCCATAAACTATTTCCTCACCAG  782

seq1  TACTCTAATTTTTATATGGGATAAAAAGCACTGAATTCACCTCCCTATTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAATTTTTATATGGGATAAAAAGCACTGAATTCACCTCCCTATTC  832

seq1  CAAAGAACTTTTTTTCTTTCTTTTTTGCCAGTTCAGTCCCTGAAGCAACG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACTTTTTTTCTTTCTTTTTTGCCAGTTCAGTCCCTGAAGCAACG  882

seq1  TCCAAAGATAAGAGACTCTTTTATCTTGATCCTAAAAACTCCCTGGATTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGATAAGAGACTCTTTTATCTTGATCCTAAAAACTCCCTGGATTT  932

seq1  TATTCAGTGTAATGATCCTAGAATTCAAGGATTTTAGCTTGTCATTCTTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTGTAATGATCCTAGAATTCAAGGATTTTAGCTTGTCATTCTTT  982

seq1  TTCTTCAGGCTGCCCATTGATGTTCAGAACAGCTGCCCTTTTTCTAAGTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGGCTGCCCATTGATGTTCAGAACAGCTGCCCTTTTTCTAAGTC  1032

seq1  CATAAATTCCTCATGTAAATCATACTGTTCTCTTATGGGAACAACTCAGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTCCTCATGTAAATCATACTGTTCTCTTATGGGAACAACTCAGT  1082

seq1  TCCCAAAATCCATCCCTGCAATGGGGCACTTGATGCCAGGTGACCACAGG  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAATCCATCCCTGCAATGGGGCACTTGATGCCAGGTGACCACAGG  1132

seq1  CAGTGATTTGATTAGATTTTTGCACTGCTTCTGAATTC  1177
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTTGATTAGATTTTTGCACTGCTTCTGAATTC  1170


seq1: chr4_28157951_28159066
seq2: B6Ng01-193H13.g_63_1200

seq1  GAATTCTTTGTTTAGCTATGTACCTCATTTTTTGTAAATATTTTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTATGTACCTCATTTTTTGTAAATATTTTGTACTT  50

seq1  GCTCTTTGTATATATTGGATATTATTACTCTGTCGGATGTAGATTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGTATATATTGGATATTATTACTCTGTCGGATGTAGATTTATTA  100

seq1  CAGATCTTTACCCAATATTTGGGTTGCCATTTTGTCCTATTGACAGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTTACCCAATATTTGGGTTGCCATTTTGTCCTATTGACAGTGTC  150

seq1  CTTTGACTTACAGAAGCTCTGAAATTTCAGAGTTCTCTAAGGAGCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTTACAGAAGCTCTGAAATTTCAGAGTTCTCTAAGGAGCAAAAT  200

seq1  TTAATTATGAGTCATGATACAATAATCACATTGCAGTATTTAAGTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGAGTCATGATACAATAATCACATTGCAGTATTTAAGTACTAA  250

seq1  GACTTCAGTGATTTGAAGTCTGTACAGTCAATCATTACCTTTGGTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTGATTTGAAGTCTGTACAGTCAATCATTACCTTTGGTATGTT  300

seq1  TACTTGCCAGTAGACCCATTAAATAAAATACTTTGAAGTTCTTGTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCAGTAGACCCATTAAATAAAATACTTTGAAGTTCTTGTAATAA  350

seq1  ATATGTTTTTATAAATATTTGTTATGCCCCCAAATAAAGTCAAATTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTTATAAATATTTGTTATGCCCCCAAATAAAGTCAAATTAATT  400

seq1  GAGAAAATCTCAAGTATATTATTATATAGTATAATTGTTCCACCATTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATCTCAAGTATATTATTATATAGTATAATTGTTCCACCATTCAC  450

seq1  CCAATAATGTTTGTAGAACACAGGTTTACACTTTACAGTATTTTCTATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATGTTTGTAGAACACAGGTTTACACTTTACAGTATTTTCTATGC  500

seq1  TATCAAAATATAAAATATTAATATCAATTTAATATTGCACAATTTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAATATAAAATATTAATATCAATTTAATATTGCACAATTTTAATG  550

seq1  AATACTGACAAATAAGAACAAAATAAAACATTTCTCTTACCCAACCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGACAAATAAGAACAAAATAAAACATTTCTCTTACCCAACCCTTA  600

seq1  CCCATATTAAGTCCATTCTCTTACCTTGCAAAGTCGCAGTGCCCAAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTAAGTCCATTCTCTTACCTTGCAAAGTCGCAGTGCCCAAATTA  650

seq1  CTTACTATCTGTCTTCTCAACTATTTCCTTCCTGATTCCACCTTCACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATCTGTCTTCTCAACTATTTCCTTCCTGATTCCACCTTCACAAG  700

seq1  AATAGATTTGAGTAACTGCTTTCATTACTTAT-CCAAATAGTGTACATTC  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATAGATTTGAGTAACTGCTTTCATTACTTATCCCAAATAGTGTACATTC  750

seq1  AAGATGTCAA-TTACTTCTTAAATTTGTTCAGGGGGAACAAAAG-AAGGT  797
      |||||||||| |||||||||||||||||||| |||||||||||| |||||
seq2  AAGATGTCAATTTACTTCTTAAATTTGTTCA-GGGGAACAAAAGAAAGGT  799

seq1  TGGAGATTA-TTTTTTTCATGCCAATACCAAACTATAAATATTTCATGAG  846
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TGGAGATTATTTTTTTTCATGCCAATACCAAACTAT-AATATTTCATGAG  848

seq1  CATGCTTATTTCACAT-GGTCCAACATCACAATCATGAATTTT-ACACTC  894
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CATGCTTATTTCACATGGGTCCAACATCACAATCATGAATTTTAACACTC  898

seq1  AAGATCTAACACATTGTTTATTC-TCAGAACTTAATACTTCAACATTCTT  943
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGATCTAACACATTGTTTATTCTTCAGAACTTAATACTTCAACATTCTT  948

seq1  TC-ATTG-CTAC-TAC-AATA-TTTTTTATGTTTTTT-GAGAGTATT-GC  986
      || |||| |||| ||| |||| ||||||||||||||| ||||||||| ||
seq2  TCAATTGCCTACTTACAAATATTTTTTTATGTTTTTTGGAGAGTATTGGC  998

seq1  T-AAGTTTGATCTTTCTTT-ACACAT-GATAT-CAT-CTTG-CTTCAGTC  1030
      | |||||  |||||||||| |||||| ||||| ||| |||| ||||||||
seq2  TAAAGTTGAATCTTTCTTTAACACATGGATATCCATCCTTGCCTTCAGTC  1048

seq1  TTCCAAGTGCT-GAGCTTA--CAGTT-GAGGTACTTGTCCTGTATCATCA  1076
      | | | ||||| |||||||   |||| ||||||| |||||| ||||||||
seq2  TCCAAGGTGCTGGAGCTTAACAAGTTGGAGGTAC-TGTCCTTTATCATCA  1097

seq1  CTA-TCAT-CTTTTTGATTTTATTGTTATTTACATTTCCTTC  1116
      | | |||| |||||||| ||||||| ||||||||  ||||||
seq2  CCATTCATCCTTTTTGAATTTATTGGTATTTACA-GTCCTTC  1138


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