BAC Information

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BAC

Clone NameB6Ng01-193P13
Chromosome4 (Build37)
Map Location 25,364,221 - 25,482,386
singlet/doubletdoublet
Overlap geneLOC625732
Upstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
Downstream geneFut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193P13.bB6Ng01-193P13.g
ACCGA016789GA016790
length1,165785
definitionB6Ng01-193P13.b B6Ng01-193P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,364,221 - 25,365,245)(25,481,810 - 25,482,386)
sequence
gaattcagtgatctgtctgcctatgttaagcacagatgataaactagctg
agtgggaccctgtcctgaaattagcatttctaccacacctgggcctaacc
atgctcgatcccaggctggccctgaatttaggaatctgtttgcctttgta
agcataaataaagaaacaaagaaaaaaacttagctgggtggtatctctca
tgatcactactccttaaatctctatcttattccttagtaaatttctgaca
agctcagctgcctttgttcctttagattcatgaaacccttcataattcat
attgcatccttatatgttgcattgttgggaaattatatatatttgaacca
atgtttttagagttcttttctagagccttaaggactgtcctgagggcccc
agcatttactgttttgctgagacattagccacatctcctctcaaactagt
gctgtctatgattaacaggaatcattaacgttaacagggagaacacttgt
tgaagaaggaagataaagtatgtacactattttacagataagcccacagc
atccattgatgctcatggaggcccacacctgctggccctgtcccagggac
aggagccgtgtcattttgtccataccaaagctatgcgggaccagcagaaa
tgaaatcactttctgttccattatctttctgtttcttccaatcatctgaa
tggtctataaaaggataaagcctatgtctgattagactcagcatcttcgt
ggggttggaagggccaggcttacacaggcttgcccatgaacacttgggtt
ttcttttttttttcccctttttttcttttattggaaactgattattctct
catacaatatctcctgcttaaagtttcctctctctctactcctctctgtc
cttccccactgcccctttcctccagagctaccctttttttatatatctca
ataaaagaacaggtttctaagggataaccagcaacatgttcaattaaata
tagaattgaagcacaaggccttcatatggagttggaacatgccacacaac
aggagaaaaaggagttccaagcagcattaaatgtttagtgatccactaat
tctctcatcgaaagagccattaaagagtagcttaaagctataatactata
catgtgcattaatgt

gaattcaaaccaggagcctggagcataaaccacacaggaccactgattac
tggctactctggtgctctcatgaagctatttgtttctgtatagcccagat
ctacctaccagggactggtaccacccacagcagacagagccttcccacat
caatttgcaattaagaaaatattcctctctaactcaattgtcatcagaga
ggcttcagcctgcaatggatgaaaacaaatgcagaaacccaaagtcaaac
atgtgacagagcttggagaatcctgtggaagaggggcaggaggattgtag
gagcctgacggtccatagacaccacaagaaaacccagagtcatctaactt
gagctcatgggatcttgcagagatgggaccaccgaccaggaagcctgcat
gggtctgacttaggccctccacacatgttatagttctgtagctagatctt
cttgtaggagtactaacagtggaaaggggagctgtctctgactctcttga
ctgctgttgagacccttgcccctactgggctgccttgtctagccttaata
gaagaggaggtgcttactcttactgcaacttgatgtgccttgaatgttat
ccctctaggttggcccttttctgaaaagggggagagggacttggaggtga
ggagggaggggaaactgtggttcagatgtaaaataaaattaaaaattaaa
taaaagaaaaaattgtctcttggatatactataagcagagctggtatgga
tatacgtgtgtgtgtgtgtgtgtgtgtgttgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25364221_25365245
seq2: B6Ng01-193P13.b_196_1214

seq1  TGTAAGCATAAATAAAGAAACAAAGAAAAAAACTTAGCTGGGTGGTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCATAAATAAAGAAACAAAGAAAAAAACTTAGCTGGGTGGTATCT  50

seq1  CTCATGATCACTACTCCTTAAATCTCTATCTTATTCCTTAGTAAATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATCACTACTCCTTAAATCTCTATCTTATTCCTTAGTAAATTTCT  100

seq1  GACAAGCTCAGCTGCCTTTGTTCCTTTAGATTCATGAAACCCTTCATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTCAGCTGCCTTTGTTCCTTTAGATTCATGAAACCCTTCATAAT  150

seq1  TCATATTGCATCCTTATATGTTGCATTGTTGGGAAATTATATATATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTGCATCCTTATATGTTGCATTGTTGGGAAATTATATATATTTGA  200

seq1  ACCAATGTTTTTAGAGTTCTTTTCTAGAGCCTTAAGGACTGTCCTGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTTTTTAGAGTTCTTTTCTAGAGCCTTAAGGACTGTCCTGAGGG  250

seq1  CCCCAGCATTTACTGTTTTGCTGAGACATTAGCCACATCTCCTCTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCATTTACTGTTTTGCTGAGACATTAGCCACATCTCCTCTCAAAC  300

seq1  TAGTGCTGTCTATGATTAACAGGAATCATTAACGTTAACAGGGAGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGTCTATGATTAACAGGAATCATTAACGTTAACAGGGAGAACAC  350

seq1  TTGTTGAAGAAGGAAGATAAAGTATGTACACTATTTTACAGATAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAGAAGGAAGATAAAGTATGTACACTATTTTACAGATAAGCCCA  400

seq1  CAGCATCCATTGATGCTCATGGAGGCCCACACCTGCTGGCCCTGTCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCATTGATGCTCATGGAGGCCCACACCTGCTGGCCCTGTCCCAG  450

seq1  GGACAGGAGCCGTGTCATTTTGTCCATACCAAAGCTATGCGGGACCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGCCGTGTCATTTTGTCCATACCAAAGCTATGCGGGACCAGCA  500

seq1  GAAATGAAATCACTTTCTGTTCCATTATCTTTCTGTTTCTTCCAATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATCACTTTCTGTTCCATTATCTTTCTGTTTCTTCCAATCATC  550

seq1  TGAATGGTCTATAAAAGGATAAAGCCTATGTCTGATTAGACTCAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTCTATAAAAGGATAAAGCCTATGTCTGATTAGACTCAGCATCT  600

seq1  TCGTGGGGTTGGAAGGGCCAGGCTTACACAGGCTTGCCCATGAACACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGGTTGGAAGGGCCAGGCTTACACAGGCTTGCCCATGAACACTTG  650

seq1  GGTTTTCTTTTTTTTT--CCCCTTTTTTCTTTTATTGGAAACTGATTATT  698
      ||||||||||||||||  ||| ||||||||||||||||||||||||||||
seq2  GGTTTTCTTTTTTTTTTCCCCTTTTTTTCTTTTATTGGAAACTGATTATT  700

seq1  CTCTCATACAATATCTCCTGCTTAAAGTTTCCTCTCTCTCTACTCCTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATACAATATCTCCTGCTTAAAGTTTCCTCTCTCTCTACTCCTCTC  750

seq1  TGTCCTTCCCCACTGCCCCTTCCCTCCAGAGCTACCC-TTTTTTATATAT  797
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TGTCCTTCCCCACTGCCCCTTTCCTCCAGAGCTACCCTTTTTTTATATAT  800

seq1  CTC-ATAAAAGAACAGGTTTCTAAGGGATAACCAGCAAACATGTCAAAAT  846
      ||| |||||||||||||||||||||||||||||||| |||||||   |||
seq2  CTCAATAAAAGAACAGGTTTCTAAGGGATAACCAGC-AACATGT-TCAAT  848

seq1  AAAATATAAGAAAATGAAGCACAA-GCCTTCATATTGAAGTTGG-ACATG  894
       |||||||   || |||||||||| ||||||||| || |||||| |||| 
seq2  TAAATATA--GAATTGAAGCACAAGGCCTTCATA-TGGAGTTGGAACAT-  894

seq1  GCAACACAACAGGAGAAAAAAGAGTTCCAAAAGCAGGCATAAATG-TTAG  943
      || ||||||||||||||||| |||||||  ||||||   |||||| ||||
seq2  GCCACACAACAGGAGAAAAAGGAGTTCC--AAGCAGCATTAAATGTTTAG  942

seq1  TGACCCACTTATTCTCTCAATCAGAAGAGCCATAAAAAGAGTAAGCTAAA  993
      ||| ||||| |||||||| |||  |||||||||  ||||||| |||| ||
seq2  TGATCCACTAATTCTCTC-ATCGAAAGAGCCAT-TAAAGAGT-AGCTTAA  989

seq1  AGCTATAATACATATACATGTGTATTATATGT  1025
      ||||||||||| |||||||||| |||| ||||
seq2  AGCTATAATAC-TATACATGTGCATTA-ATGT  1019


seq1: chr4_25481810_25482386
seq2: B6Ng01-193P13.g_288_845 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACG  50
                        |||||| |||||||||||||||||||||||||
seq2  ------------------CACACA-ACACACACACACACACACACACACG  31

seq1  TATATCCATACCAGCTCTGCTTATAGTAATATCCAAGAGACAATTTTTTC  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATATCCATACCAGCTCTGCTTATAGT-ATATCCAAGAGACAATTTTTTC  80

seq1  TTTTATTTAA-TTTTAATTTTATTTTACATCTGAACCACAGTTTCCCCTC  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAATTTTTAATTTTATTTTACATCTGAACCACAGTTTCCCCTC  130

seq1  CCTCCTCACCTCCAAGTCCCTCTCCCCCTTTTCAGAAAAGGGCCAACCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCACCTCCAAGTCCCTCTCCCCCTTTTCAGAAAAGGGCCAACCTA  180

seq1  GAGGGATAACATTCAAGGCACATCAAGTTGCAGTAAGAGTAAGCACCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATAACATTCAAGGCACATCAAGTTGCAGTAAGAGTAAGCACCTCC  230

seq1  TCTTCTATTAAGGCTAGACAAGGCAGCCCAGTAGGGGCAAGGGTCTCAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATTAAGGCTAGACAAGGCAGCCCAGTAGGGGCAAGGGTCTCAAC  280

seq1  AGCAGTCAAGAGAGTCAGAGACAGCTCCCCTTTCCACTGTTAGTACTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAAGAGAGTCAGAGACAGCTCCCCTTTCCACTGTTAGTACTCCT  330

seq1  ACAAGAAGATCTAGCTACAGAACTATAACATGTGTGGAGGGCCTAAGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGATCTAGCTACAGAACTATAACATGTGTGGAGGGCCTAAGTCA  380

seq1  GACCCATGCAGGCTTCCTGGTCGGTGGTCCCATCTCTGCAAGATCCCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGCAGGCTTCCTGGTCGGTGGTCCCATCTCTGCAAGATCCCATG  430

seq1  AGCTCAAGTTAGATGACTCTGGGTTTTCTTGTGGTGTCTATGGACCGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGTTAGATGACTCTGGGTTTTCTTGTGGTGTCTATGGACCGTCA  480

seq1  GGCTCCTACAATCCTCCTGCCCCTCTTCCACAGGATTCTCCAAGCTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTACAATCCTCCTGCCCCTCTTCCACAGGATTCTCCAAGCTCTGT  530

seq1  CACATGTTTGACTTTGGGTTTCTGCATT  577
      ||||||||||||||||||||||||||||
seq2  CACATGTTTGACTTTGGGTTTCTGCATT  558


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