BAC Information

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BAC

Clone NameB6Ng01-196M14
Chromosome4 (Build37)
Map Location 76,105,993 - 76,184,173
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M14.bB6Ng01-196M14.g
ACCGA018833GA018834
length1,154889
definitionB6Ng01-196M14.b B6Ng01-196M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,105,993 - 76,107,407)(76,183,293 - 76,184,173)
sequence
gaattcattttcttgagaaagaaatattcttggtaaactctaataataga
aactatcaatacatattgaacagacatctccctccaggagttcctagcag
atatgtggatacaagctactctttattggcccagagtgaacatacttgtg
acattttcttgtccacaaggaaagttgagagaccaatcttttgtaatgtt
ccttacaattttctaaaatacacattatacaggcaacccagactattagt
tgctccagagtccaaaatttagggctagttgctgggagtcaatattttgg
gcaagcttttcaggcaattctgaaaactaccatgagaacataattcagat
tcattgatttgtttaattgttcctaggatgatttcccagtacaatggagc
agaatctgacattccctagaaagctacctgatttttaccaatctcctttc
actaccacctctgtcccctgatccactgcacctctgctttcttctactac
ttaaaagtggtaaaagggggcaggtcacaggttttacctaagtctttata
agcttttgaattttgccttgcatggctggcttattataacagcctgcact
ctgatagaaatgcccagttcctaacacatttgtagggacttggatcctac
ccatttccctcctggctataactaacatcctaacagcctgcagagacctc
agggtccttcagcaggcagctgtaattacatgaaatttactggacatcca
agtacaaacccagcaacctgccaggacatttccattctagctgcttcact
aggggagaatcggccatgaactctgtggtactgtttgccttttcccaata
gttaaaaacaaaaagaaaaacaaaaacagggtggcagcaagataggctct
tagcttgctcagcatcatagctgcattggaaaagcagtctcatatatgac
atgaaattgtaaataaaccctgcgaaagccttagaataaaattacatttc
acaagggaggaaaacaatgttattttctgcccctttaatgactcctgctc
cacacagagcttggcagagaaagggtctgatttttgtgttctagatgagc
acagtgatcgattggagttacaggtggctagcacctcaggacatagaaag
gaac

gaattcttctgtatgcactcttagcccttcagttaggggaatgaggattt
gtaaatttaatacactcctaaaagttttttatctgcaaggcagaagatgt
ttggtttgactttatctgttagtcatggaatgttagaaccaatacaggga
tgcgtgagaatgtctataagaagctaaagatagcccaacataaatactaa
ttagtgtctggactggcaacattctaccctcttcatatcactgaaggttt
aatcagtcagtcaacatttgcaggcacaacttctttccggaaattctttt
tcacagcttatttgataatcgttttatcaatgactgattatcttctgctt
ccttgaataaataatatttagatagatgggtgatcttttacaatctctca
cgtaatgaactctttccttgaaaggagctttcagggttttgttttaccgt
tttgttttgttttgttttgtttggaagttcttttcattatttggtggggg
tgggagctttggggttgtgttgcagtgtgaatagtgtacatgcatattcg
agcagatgtgtgtacacacgctgtccatgagtgtggataccagagatcaa
tgtcaagtgtctacctctatcactgtcaacctttacagccctctcagtga
atcttaatgctcactgattagatttcagcaagacaaacttgccagtaagc
catgaagtagcctgacatcttcacccctactgcatctccttcagctccag
gctcacacatgctgacttcttcttggtcctaaggattcaacgtcaaatct
tctatggttacactgcagcaaagttacttagctgaaattatctccctcct
tcactttttttttttttttttttgatgttcatcttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76105993_76107407
seq2: B6Ng01-196M14.b_44_1197

seq1  GAATTCATTTTCTTGAGAAAGAAATATTCTTGGTAAACTCTAATAATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTTGAGAAAGAAATATTCTTGGTAAACTCTAATAATAGA  50

seq1  AACTATCAATACATATTGAACAGACATCTCCCTCCAGGAGTTCCTAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCAATACATATTGAACAGACATCTCCCTCCAGGAGTTCCTAGCAG  100

seq1  ATATGTGGATACAAGCTACTCTTTATTGGCCCAGAGTGAACATACTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGATACAAGCTACTCTTTATTGGCCCAGAGTGAACATACTTGTG  150

seq1  ACATTTTCTTGTCCACAAGGAAAGTTGAGAGACCAATCTTTTGTAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTGTCCACAAGGAAAGTTGAGAGACCAATCTTTTGTAATGTT  200

seq1  CCTTACAATTTTCTAAAATACACATTATACAGGCAACCCAGACTATTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAATTTTCTAAAATACACATTATACAGGCAACCCAGACTATTAGT  250

seq1  TGCTCCAGAGTCCAAAATTTAGGGCTAGTTGCTGGGAGTCAATATTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGAGTCCAAAATTTAGGGCTAGTTGCTGGGAGTCAATATTTTGG  300

seq1  GCAAGCTTTTCAGGCAATTCTGAAAACTACCATGAGAACATAATTCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTTTCAGGCAATTCTGAAAACTACCATGAGAACATAATTCAGAT  350

seq1  TCATTGATTTGTTTAATTGTTCCTAGGATGATTTCCCAGTACAATGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATTTGTTTAATTGTTCCTAGGATGATTTCCCAGTACAATGGAGC  400

seq1  AGAATCTGACATTCCCTAGAAAGCTACCTGATTTTTACCAATCTCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGACATTCCCTAGAAAGCTACCTGATTTTTACCAATCTCCTTTC  450

seq1  ACTACCACCTCTGTCCCCTGATCCACTGCACCTCTGCTTTCTTCTACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACCTCTGTCCCCTGATCCACTGCACCTCTGCTTTCTTCTACTAC  500

seq1  TTAAAAGTGGTAAAAGGGGGCAGGTCACAGGTTTTACCTAAGTCTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGGTAAAAGGGGGCAGGTCACAGGTTTTACCTAAGTCTTTATA  550

seq1  AGCTTTTGAATTTTGCCTTGCATGGCTGGCTTATTATAACAGCCTGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAATTTTGCCTTGCATGGCTGGCTTATTATAACAGCCTGCACT  600

seq1  CTGATAGAAATGCCCAGTTCCTAACACATTTGTAGGGACTTGGATCCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGAAATGCCCAGTTCCTAACACATTTGTAGGGACTTGGATCCTAC  650

seq1  CCATTTCCCTCCTGGCTATAACTAACATCCTAACAGCCTGCAGAGACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCTCCTGGCTATAACTAACATCCTAACAGCCTGCAGAGACCTC  700

seq1  AGGGTCCTTCAGCAGGCAGCTGTAATTACATGAAATTTACTGGACATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTTCAGCAGGCAGCTGTAATTACATGAAATTTACTGGACATCCA  750

seq1  AGTACAAACCCAGCAACCTGCCAGGACATTTCCATTCTAGCTGCTTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAACCCAGCAACCTGCCAGGACATTTCCATTCTAGCTGCTTCACT  800

seq1  AGGGGAGAATCGGCCATGAACTCTGTGGTACTGTTTGCCTTTTCCCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAATCGGCCATGAACTCTGTGGTACTGTTTGCCTTTTCCCAATA  850

seq1  GTTAAAAACAAAAAGAAAAACAAAAACAGGGTGGCAGCAAGATAGGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAACAAAAAGAAAAACAAAAACAGGGTGGCAGCAAGATAGGCTCT  900

seq1  TAGCTTGCTCAGCATCATAGCTGCATTGGAAAAGCAGTCTCATATATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCTCAGCATCATAGCTGCATTGGAAAAGCAGTCTCATATATGAC  950

seq1  ATGAAATTGTAAATAAACCCTGCGAAAGCCTTAGAATAAAATTACATTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTGTAAATAAACCCTGCGAAAGCCTTAGAATAAAATTACATTTC  1000

seq1  ACAAGGGAGG-AGACAATGTTA-TTTCTG-CCCTTTAATGACTCCTGCTC  1047
      |||||||||| | ||||||||| |||||| ||||||||||||||||||||
seq2  ACAAGGGAGGAAAACAATGTTATTTTCTGCCCCTTTAATGACTCCTGCTC  1050

seq1  CACACAGAGCTTGCAAGAGGAAAGGGTCTTGATTTTGTG-TCTAGAATGA  1096
      |||||||||||||  ||| ||||||||||   ||||||| ||||| ||| 
seq2  CACACAGAGCTTGGCAGA-GAAAGGGTCTGATTTTTGTGTTCTAG-ATG-  1097

seq1  AGCACAGTTGATCGGAATTGAAGTTACAAAGGGTGGCTAGGGAACCTCAG  1146
      ||||||| ||||||  |||| |||||||   ||||||||  | |||||||
seq2  AGCACAG-TGATCG--ATTGGAGTTACA---GGTGGCTA--GCACCTCAG  1139

seq1  GACATAAAAGAAAAGAAAATGTATATCAACTACACAACCCTTCCTGATTC  1196
      |||||   ||||| |||                                 
seq2  GACAT---AGAAAGGAAC--------------------------------  1154

seq1  TCATAGTTTCCAAATTCTTTTGGTTCACCACTCAGGCTTAGTAAGGTCTC  1246
                                                        
seq2  --------------------------------------------------  1154

seq1  CGTGGGTAGCTTTTCTGGGCACAGTTTCTGAGAATCTGTCTGTCACAGAA  1296
                                                        
seq2  --------------------------------------------------  1154

seq1  AGAGAGATTGCGGAGCCTGGCATTCTTTCCTGTGGGCAATAGAAATGGTT  1346
                                                        
seq2  --------------------------------------------------  1154

seq1  ATGCCACAGACGTTAACACACACTCTTGGGAGTGCAATACCCTGTGATTT  1396
                                                        
seq2  --------------------------------------------------  1154

seq1  GCCACCACTTGAAAGGAAC  1415
                         
seq2  -------------------  1154


seq1: chr4_76183293_76184173
seq2: B6Ng01-196M14.g_66_954 (reverse)

seq1  TTTGAAGATGAACAATC--AAAAAAAAAAAAAAAAAGTGAATGGAGGAGA  48
      ||||||||||||| |||  |||||||||||||||||||||| |  |||||
seq2  TTTGAAGATGAAC-ATCAAAAAAAAAAAAAAAAAAAGTGAAGGAGGGAGA  49

seq1  TAA-TTCAGCT-AGTAACTTGCTTGCAGTGTAACCATAG-AGATTTGACG  95
      ||| ||||||| ||||||||   |||||||||||||||| ||||||||||
seq2  TAATTTCAGCTAAGTAACTTTGCTGCAGTGTAACCATAGAAGATTTGACG  99

seq1  TTGGATCCTTAGGACCAAGAAGAAGTCAGCATGTGTGAGCCTGGAGCTGA  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCTTAGGACCAAGAAGAAGTCAGCATGTGTGAGCCTGGAGCTGA  149

seq1  AGGAGATGCAGTAGGGGTGAAGATGTCAGGCTAC-TCATGGCTTACTGGC  194
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGAGATGCAGTAGGGGTGAAGATGTCAGGCTACTTCATGGCTTACTGGC  199

seq1  AAGTTTGTCTTGCTG-AATCTAATCAGTGAGCATTAAGATTCACTGAGA-  242
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  AAGTTTGTCTTGCTGAAATCTAATCAGTGAGCATTAAGATTCACTGAGAG  249

seq1  GGCTGT-AAGGTTGACAGTGATAGAGGTAGACACTTGACATTGATCTCTG  291
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAAAGGTTGACAGTGATAGAGGTAGACACTTGACATTGATCTCTG  299

seq1  GTATCCACACTCATGGACAGCGTGTGTACACACATCTGCTCGAATATGCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCACACTCATGGACAGCGTGTGTACACACATCTGCTCGAATATGCA  349

seq1  TGTACACTATTCACACTGCAACACAACCCCAAAGCTCCCACCCCCACCAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTATTCACACTGCAACACAACCCCAAAGCTCCCACCCCCACCAA  399

seq1  ATAATGAAAAGAACTTCCAAACAAAACAAAACAAAACAAAACGGTAAAAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAAAGAACTTCCAAACAAAACAAAACAAAACAAAACGGTAAAAC  449

seq1  AAAACCCTGAAAGCTCCTTTCAAGGAAAGAGTTCATTACGTGAGAGATTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTGAAAGCTCCTTTCAAGGAAAGAGTTCATTACGTGAGAGATTG  499

seq1  TAAAAGATCACCCATCTATCTAAATATTATTTATTCAAGGAAGCAGAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATCACCCATCTATCTAAATATTATTTATTCAAGGAAGCAGAAGA  549

seq1  TAATCAGTCATTGATAAAACGATTATCAAATAAGCTGTGAAAAAGAATTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTCATTGATAAAACGATTATCAAATAAGCTGTGAAAAAGAATTT  599

seq1  CCGGAAAGAAGTTGTGCCTGCAAATGTTGACTGACTGATTAAACCTTCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAAGAAGTTGTGCCTGCAAATGTTGACTGACTGATTAAACCTTCAG  649

seq1  TGATATGAAGAGGGTAGAATGTTGCCAGTCCAGACACTAATTAGTATTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGAAGAGGGTAGAATGTTGCCAGTCCAGACACTAATTAGTATTTA  699

seq1  TGTTGGGCTATCTTTAGCTTCTTATAGACATTCTCACGCATCCCTGTATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCTATCTTTAGCTTCTTATAGACATTCTCACGCATCCCTGTATT  749

seq1  GGTTCTAACATTCCATGACTAACAGATAAAGTCAAACCAAACATCTTCTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAACATTCCATGACTAACAGATAAAGTCAAACCAAACATCTTCTG  799

seq1  CCTTGCAGATAAAAAACTTTTAGGAGTGTATTAAATTTACAAATCCTCAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGATAAAAAACTTTTAGGAGTGTATTAAATTTACAAATCCTCAT  849

seq1  TCCCCTAACTGAAGGGCTAAGAGTGCATACAGAAGAATTC  881
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAACTGAAGGGCTAAGAGTGCATACAGAAGAATTC  889


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