BAC Information

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BAC

Clone NameB6Ng01-200D08
Chromosome4 (Build37)6 (Build37)
Map Location 73,007,089 - 73,008,09855,577,996 - 55,578,159
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D08.bB6Ng01-200D08.g
ACCGA021336GA021337
length1,028440
definitionB6Ng01-200D08.b B6Ng01-200D08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,007,089 - 73,008,098)(55,577,996 - 55,578,159)
sequence
gaattcaatttggttactgctaatttatcatatatatattttcatctttt
ttttcattttacaaatagaaaggatggtaactggtaaaaaaaatagccct
cagaatatatagtaaaataaattgtgctgagcatattgagtaggatggag
gaaacttttgccaggctcagagtaataactctgagaaacactaggttaag
aagaaaaaaaggaagtggtgaggatggttagcatttgtaagtcagaattg
agaatttagacatctaaaggtatatatgataaggtcaaaaatcagatttg
aatgaaaaacctagagtggactgtcaggaagggtattttaactactgtaa
agccttaaaggaaggcatttatcactgtatttctatcacataatttctta
aaagtattgcaatttgctctaacatgacctactaataatatatggtaaag
gaattagttcttctctattttgtggcttacctccgaattgaatgtgatgc
catccaggaaagagaaagcaggtatatggctgaataagactgcaatgact
tcatcttctactctaagttcctgaacttatacttcagcaataaaatagtt
gttaaagatagtaccacaacctagtcaatttattccattgataactactt
attaaattaaagtggttattaaatgctctgtagatagagaataaaatttt
taataatgaagaaagaatggcggagcatgtctttaatcccagcactcaag
aggaagaggagggcagattttcagtgagttccaggccagccccaaaccac
atattgaaaaccatcttttaaaatgagtataatacaatataccttctact
tccacagttctaattcatagaaaggaaagtcttttggaccacaaattttt
tggttcagtatcattttttattactggagagtgttattgataaatggggt
ctctgtatgatttgtataaagaaagcctcttttctatatactaataatat
ccttccagaggtaatgcttgaattctac

ttgaaaacattttctagacattttagttttctctcatgaaaactctttct
ttctatttctagcccatgttttatttgctgtttgtctacttaattatttt
tctgctctttgtatattctagatatgattgacggtatctctcattatgga
cttccctttcactcaattgctcatttcctttactgtacataagcttcttg
gtttggtgagaacctactcatataccattggccttaatgacagaatgagt
agcatagtgatcagaaagttctctcctgcaactaaggcttataaggtgct
tcctgtattttagtctacagtttcagaagttcagattttttattgagaca
tttgatctatttggggtttatatttcggctttattatatatatatatata
tatatatatatatatatatatatatatagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73007089_73008098
seq2: B6Ng01-200D08.b_48_1075 (reverse)

seq1  GTAGAATTCAACCA-TATCTCT-GAAG---AATTTTAGTATATA-AAAAG  44
      ||||||||||| || || |||| ||||   | | |||||||||| |||||
seq2  GTAGAATTCAAGCATTACCTCTGGAAGGATATTATTAGTATATAGAAAAG  50

seq1  AGGCTTTCTTTAATACAAATCATCCA---AACCCATTTATC-ATAACACT  90
      ||||||||||| ||||||||||| ||   | |||||||||| ||||||||
seq2  AGGCTTTCTTT-ATACAAATCATACAGAGACCCCATTTATCAATAACACT  99

seq1  CTCCAGTAAT-AAAAATGATACTGA--CCAAAAATTTGTGGTCC-AAAGA  136
      |||||||||| ||||||||||||||  | ||||||||||||||| |||||
seq2  CTCCAGTAATAAAAAATGATACTGAACCAAAAAATTTGTGGTCCAAAAGA  149

seq1  CTTTCC-TTCTATG-ATTAGAACTGTGG-AGTAGAAGGTATATTGTATTA  183
      |||||| ||||||| ||||||||||||| |||||||||||||||||||||
seq2  CTTTCCTTTCTATGAATTAGAACTGTGGAAGTAGAAGGTATATTGTATTA  199

seq1  TACTCATTTTAAAAGATGGTTTTCAATATGTGGTTT-GGGCTGGCCTGGA  232
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTCATTTTAAAAGATGGTTTTCAATATGTGGTTTGGGGCTGGCCTGGA  249

seq1  ACTCACTG-AAATCTGCCCTCCTCTTCCTCTTGAGTGCTGGGATTAAAGA  281
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGAAAATCTGCCCTCCTCTTCCTCTTGAGTGCTGGGATTAAAGA  299

seq1  CATGCTCCGCCATTCTTTCTTCATTATTAAAAATTTTATTCTCTATCTAC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCGCCATTCTTTCTTCATTATTAAAAATTTTATTCTCTATCTAC  349

seq1  AGAGCATTTAATAACCACTTTAATTTAATAAGTAGTTATCAATGGAATAA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTAATAACCACTTTAATTTAATAAGTAGTTATCAATGGAATAA  399

seq1  ATTGACTAGGTTGTGGTACTATCTTTAACAACTATTTTATTGCTGAAGTA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAGGTTGTGGTACTATCTTTAACAACTATTTTATTGCTGAAGTA  449

seq1  TAAGTTCAGGAACTTAGAGTAGAAGATGAAGTCATTGCAGTCTTATTCAG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCAGGAACTTAGAGTAGAAGATGAAGTCATTGCAGTCTTATTCAG  499

seq1  CCATATACCTGCTTTCTCTTTCCTGGATGGCATCACATTCAATTCGGAGG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACCTGCTTTCTCTTTCCTGGATGGCATCACATTCAATTCGGAGG  549

seq1  TAAGCCACAAAATAGAGAAGAACTAATTCCTTTACCATATATTATTAGTA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACAAAATAGAGAAGAACTAATTCCTTTACCATATATTATTAGTA  599

seq1  GGTCATGTTAGAGCAAATTGCAATACTTTTAAGAAATTATGTGATAGAAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGTTAGAGCAAATTGCAATACTTTTAAGAAATTATGTGATAGAAA  649

seq1  TACAGTGATAAATGCCTTCCTTTAAGGCTTTACAGTAGTTAAAATACCCT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGATAAATGCCTTCCTTTAAGGCTTTACAGTAGTTAAAATACCCT  699

seq1  TCCTGACAGTCCACTCTAGGTTTTTCATTCAAATCTGATTTTTGACCTTA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAGTCCACTCTAGGTTTTTCATTCAAATCTGATTTTTGACCTTA  749

seq1  TCATATATACCTTTAGATGTCTAAATTCTCAATTCTGACTTACAAATGCT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATACCTTTAGATGTCTAAATTCTCAATTCTGACTTACAAATGCT  799

seq1  AACCATCCTCACCACTTCCTTTTTTTCTTCTTAACCTAGTGTTTCTCAGA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCTCACCACTTCCTTTTTTTCTTCTTAACCTAGTGTTTCTCAGA  849

seq1  GTTATTACTCTGAGCCTGGCAAAAGTTTCCTCCATCCTACTCAATATGCT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACTCTGAGCCTGGCAAAAGTTTCCTCCATCCTACTCAATATGCT  899

seq1  CAGCACAATTTATTTTACTATATATTCTGAGGGCTATTTTTTTTACCAGT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAATTTATTTTACTATATATTCTGAGGGCTATTTTTTTTACCAGT  949

seq1  TACCATCCTTTCTATTTGTAAAATGAAAAAAAAGATGAAAATATATATAT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCTTTCTATTTGTAAAATGAAAAAAAAGATGAAAATATATATAT  999

seq1  GATAAATTAGCAGTAACCAAATTGAATTC  1010
      |||||||||||||||||||||||||||||
seq2  GATAAATTAGCAGTAACCAAATTGAATTC  1028


seq1: chr6_55577996_55578159
seq2: B6Ng01-200D08.g_273_512 (reverse)

seq1  TCTCTCTCTCTCTATAAATATATATGCACACATATATGCATATATACACA  50
      |||||||||||||||| ||||||||  | | ||||||  ||||||| | |
seq2  TCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATA  50

seq1  CATATA--TATGC------ATACAC----------ACATATGTATATAT-  81
       |||||   | ||      ||| ||           || |||| |  || 
seq2  TATATAATAAAGCCGAAATATAAACCCCAAATAGATCAAATGTCTCAATA  100

seq1  --ATATATATATATATGTA--TGTATA--------------------TAT  107
        | || |  |  | || |  |||| |                    |||
seq2  AAAAATCTGAACTTCTGAAACTGTAGACTAAAATACAGGAAGCACCTTAT  150

seq1  A---CATATGTGTATGTGTG---TATGTG-----TATG-TATACAT----  141
      |   | ||  || | | | |   | | ||     |||| ||  |||    
seq2  AAGCCTTAGTTGCAGGAGAGAACTTTCTGATCACTATGCTACTCATTCTG  200

seq1  --AT--------ATGGTAGA-------GTTCTCACCAAAC  164
        ||        |||||| |       |||||||||||||
seq2  TCATTAAGGCCAATGGTATATGAGTAGGTTCTCACCAAAC  240


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