BAC Information

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BAC

Clone NameB6Ng01-201C21
Chromosome4 (Build37)
Map Location 95,841,700 - 96,011,745
singlet/doubletdoublet
Overlap geneLOC546837, Cyp2j11
Upstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13, LOC242546
Downstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201C21.bB6Ng01-201C21.g
ACCGA022029GA022030
length1,206971
definitionB6Ng01-201C21.b B6Ng01-201C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,010,527 - 96,011,745)(95,841,700 - 95,842,451)
sequence
gaattcattgggtttttaaaaacaagacctgaattcagatggaaaatggg
aaactgtggcaatgttccattgacagctagagggaatgagtggaaaagga
tattagcaagatgcattgcacttttttgaaattttcaaaagataaaggga
tgctgataatattgtttccagtataatagaagttgtgtggatcatatgat
aaaggtagctttatgtctgtaattttataatatccctattaatcaagtcc
ttcatgaaatgtttcattttattgttttactttcaccctcccatttatcc
ctcctctctgtctcctcagaaaagcaaaggccttccattaatatcaatca
gcatttgtttatcaagttacagtaagactaggcttaccttcttttactga
agctagggaaagcagccaagttacaggaaagggatccaataacaggcagt
attatctttaaagtcagctggatactaaatttctcagatgaaagcagcca
tctgaggattgagaacatctccctctaagagtgtcttggagaaaccatgt
ctaactgcagtctaactcagagacatgggtaggaagtaacaacaacaaca
cccaaagcacaatacatgtgtctcatttccatttttctactccaacactc
tgccttagcaaaacagatatgaggcaccttcctcctgctgaggctcttct
tatttatgactccataaactgcatcattcaggccatgccgcacaaggatt
tctaaccttccagatagtgttagaatagactagcattttctgtatccatt
cttctgttgagggatatctgggttcttttcagcttctggatattataaat
aaggctactatgaacacagtagagcatttgtccttgctatatgttggaga
atcttttaggtatatgcccatgagtggtatatctgggtcatccacataat
catttcattagatgctgaaaaatataggaaaaactcttagccatactaag
cagagagcacagagatagtattcaaattaatgaaatcgagaaatgaaagg
gagacataacaacagaactgaagaatttttaaaatcatcagattctttca
ttcttattcttcaggtaacaactttcttacaattctttgccagaaattcc
taataaatttattgtttatttttctgtacctatgaaacctgaagtcctag
actaac
gaattcaatgattcttgaaggtgattgatggaagtttcaattttctctat
atctaaatcaatggctgccctcagactgtcacaatttttcccttgtaaga
ccaaagtggaggtctcagtgactgccctgtccactcacaatctcaacaga
aaggagacagtaagagctgtaacaggtttggtggacaggcttataggatg
gaggaaggaaacagaatctaaaggtgccaccaggctgtcatgataaagat
cagtgatcttgaacttaagcagattgtccgtcgtctgtcccatacagcag
gggacccccagagagcggggtgtctgccggtttcatatgggaagcatgca
cccaggctgcaataccatccatcttgagtactgtgggagtggttaacatc
accaggaagggtttcttccactggggttacagcaactgtgcccaatgcct
ccttatatagacccagtcaccagtctggaagcagtgaggggtccctggca
taccaggaatatttaaggcaaacagtttgggccaaatctaatgttgtctt
gacttaagaggctcctatcagtgatttgggatacctccagtggacaccaa
gagaggtagggtaccaaacaggatctcaaaaggggtcaggctaaaatggt
agggcatgttccaggctcagaacagggccagggaaaggagcatggcccag
tcactgatagtgtccaagtacaatttaattaaggtctcttttaggattat
gttcattctctctacctgccctgatctctggggacagtacagataatgga
tcttccaattagtccccaatgtctctgccaatttcctgacttatcttaca
gacaaaaacaggacccttgtccaattcaattactttaggcatgccgaacc
tcaggaaaatttcctctgatatccttcttggctaatatagtagctgtttc
ctgcttggtggagaaatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96010527_96011745
seq2: B6Ng01-201C21.b_45_1250 (reverse)

seq1  GTTAGTCTTAAAGAACTTCAGTGTTTCATAAGTTAAAAGAAAAAATAAAA  50
      ||||||||   || ||||||| |||||||| ||  | |||||||   |||
seq2  GTTAGTCT---AGGACTTCAG-GTTTCATAGGT--ACAGAAAAA--TAAA  42

seq1  CAATAAAAATTATAGGAAATATCTGCCAAAGAATTTGTAAGAAAGTTTGT  100
      |||| ||| ||||  | ||| |||| ||||||| ||||||||||| ||||
seq2  CAAT-AAATTTATTAGGAATTTCTGGCAAAGAA-TTGTAAGAAAG-TTGT  89

seq1  TA-CTGAAGGATTAAGAATGAAAAGAATCTGATGATTTTTAAAAATTTCT  149
      || ||||| || |||||||| ||||||||||||||||||  |||| ||||
seq2  TACCTGAA-GAATAAGAATG-AAAGAATCTGATGATTTT--AAAAATTCT  135

seq1  TCAGTTCTGTTGTTATGTCTCCCTTTTCATTTCT-GATTTCATTAATTTG  198
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TCAGTTCTGTTGTTATGTCTCCC-TTTCATTTCTCGATTTCATTAATTTG  184

seq1  GATACTATCTCTGTGCTCTCTGCTTAGTATGGCTAAGAGTTTTT-CTATA  247
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATACTATCTCTGTGCTCTCTGCTTAGTATGGCTAAGAGTTTTTCCTATA  234

seq1  TTTTTCAGCATCTAATGAAATGATTATGTGGATGACCCAGATATACCACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCATCTAATGAAATGATTATGTGGATGACCCAGATATACCACT  284

seq1  CATGGGCATATACCTAAAAGATTCTCCAACATATAGCAAGGACAAATGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATATACCTAAAAGATTCTCCAACATATAGCAAGGACAAATGCT  334

seq1  CTACTGTGTTCATAGTAGCCTTATTTATAATATCCAGAAGCTGAAAAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTTCATAGTAGCCTTATTTATAATATCCAGAAGCTGAAAAGAA  384

seq1  CCCAGATATCCCTCAACAGAAGAATGGATACAGAAAATGCTAGTCTATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATATCCCTCAACAGAAGAATGGATACAGAAAATGCTAGTCTATTC  434

seq1  TAACACTATCTGGAAGGTTAGAAATCCTTGTGCGGCATGGCCTGAATGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTATCTGGAAGGTTAGAAATCCTTGTGCGGCATGGCCTGAATGAT  484

seq1  GCAGTTTATGGAGTCATAAATAAGAAGAGCCTCAGCAGGAGGAAGGTGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTATGGAGTCATAAATAAGAAGAGCCTCAGCAGGAGGAAGGTGCC  534

seq1  TCATATCTGTTTTGCTAAGGCAGAGTGTTGGAGTAGAAAAATGGAAATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTGTTTTGCTAAGGCAGAGTGTTGGAGTAGAAAAATGGAAATGA  584

seq1  GACACATGTATTGTGCTTTGGGTGTTGTTGTTGTTACTTCCTACCCATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTATTGTGCTTTGGGTGTTGTTGTTGTTACTTCCTACCCATGT  634

seq1  CTCTGAGTTAGACTGCAGTTAGACATGGTTTCTCCAAGACACTCTTAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTAGACTGCAGTTAGACATGGTTTCTCCAAGACACTCTTAGAG  684

seq1  GGAGATGTTCTCAATCCTCAGATGGCTGCTTTCATCTGAGAAATTTAGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTTCTCAATCCTCAGATGGCTGCTTTCATCTGAGAAATTTAGTA  734

seq1  TCCAGCTGACTTTAAAGATAATACTGCCTGTTATTGGATCCCTTTCCTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGACTTTAAAGATAATACTGCCTGTTATTGGATCCCTTTCCTGT  784

seq1  AACTTGGCTGCTTTCCCTAGCTTCAGTAAAAGAAGGTAAGCCTAGTCTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCTGCTTTCCCTAGCTTCAGTAAAAGAAGGTAAGCCTAGTCTTA  834

seq1  CTGTAACTTGATAAACAAATGCTGATTGATATTAATGGAAGGCCTTTGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTTGATAAACAAATGCTGATTGATATTAATGGAAGGCCTTTGCT  884

seq1  TTTCTGAGGAGACAGAGAGGAGGGATAAATGGGAGGGTGAAAGTAAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGAGACAGAGAGGAGGGATAAATGGGAGGGTGAAAGTAAAACA  934

seq1  ATAAAATGAAACATTTCATGAAGGACTTGATTAATAGGGATATTATAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGAAACATTTCATGAAGGACTTGATTAATAGGGATATTATAAAA  984

seq1  TTACAGACATAAAGCTACCTTTATCATATGATCCACACAACTTCTATTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACATAAAGCTACCTTTATCATATGATCCACACAACTTCTATTAT  1034

seq1  ACTGGAAACAATATTATCAGCATCCCTTTATCTTTTGAAAATTTCAAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAACAATATTATCAGCATCCCTTTATCTTTTGAAAATTTCAAAAA  1084

seq1  AGTGCAATGCATCTTGCTAATATCCTTTTCCACTCATTCCCTCTAGCTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATGCATCTTGCTAATATCCTTTTCCACTCATTCCCTCTAGCTGT  1134

seq1  CAATGGAACATTGCCACAGTTTCCCATTTTCCATCTGAATTCAGGTCTTG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAACATTGCCACAGTTTCCCATTTTCCATCTGAATTCAGGTCTTG  1184

seq1  TTTTTAAAAACCCAATGAATTC  1219
      ||||||||||||||||||||||
seq2  TTTTTAAAAACCCAATGAATTC  1206

seq1: chr4_95841700_95842451
seq2: B6Ng01-201C21.g_64_815

seq1  GAATTCAATGATTCTTGAAGGTGATTGATGGAAGTTTCAATTTTCTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGATTCTTGAAGGTGATTGATGGAAGTTTCAATTTTCTCTAT  50

seq1  ATCTAAATCAATGGCTGCCCTCAGACTGTCACAATTTTTCCCTTGTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAATCAATGGCTGCCCTCAGACTGTCACAATTTTTCCCTTGTAAGA  100

seq1  CCAAAGTGGAGGTCTCAGTGACTGCCCTGTCCACTCACAATCTCAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGGAGGTCTCAGTGACTGCCCTGTCCACTCACAATCTCAACAGA  150

seq1  AAGGAGACAGTAAGAGCTGTAACAGGTTTGGTGGACAGGCTTATAGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAGTAAGAGCTGTAACAGGTTTGGTGGACAGGCTTATAGGATG  200

seq1  GAGGAAGGAAACAGAATCTAAAGGTGCCACCAGGCTGTCATGATAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGAAACAGAATCTAAAGGTGCCACCAGGCTGTCATGATAAAGAT  250

seq1  CAGTGATCTTGAACTTAAGCAGATTGTCCGTCGTCTGTCCCATACAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCTTGAACTTAAGCAGATTGTCCGTCGTCTGTCCCATACAGCAG  300

seq1  GGGACCCCCAGAGAGCGGGGTGTCTGCCGGTTTCATATGGGAAGCATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCCCAGAGAGCGGGGTGTCTGCCGGTTTCATATGGGAAGCATGCA  350

seq1  CCCAGGCTGCAATACCATCCATCTTGAGTACTGTGGGAGTGGTTAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGCAATACCATCCATCTTGAGTACTGTGGGAGTGGTTAACATC  400

seq1  ACCAGGAAGGGTTTCTTCCACTGGGGTTACAGCAACTGTGCCCAATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGGGTTTCTTCCACTGGGGTTACAGCAACTGTGCCCAATGCCT  450

seq1  CCTTATATAGACCCAGTCACCAGTCTGGAAGCAGTGAGGGGTCCCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATAGACCCAGTCACCAGTCTGGAAGCAGTGAGGGGTCCCTGGCA  500

seq1  TACCAGGAATATTTAAGGCAAACAGTTTGGGCCAAATCTAATGTTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAATATTTAAGGCAAACAGTTTGGGCCAAATCTAATGTTGTCTT  550

seq1  GACTTAAGAGGCTCCTATCAGTGATTTGGGATACCTCCAGTGGACACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGAGGCTCCTATCAGTGATTTGGGATACCTCCAGTGGACACCAA  600

seq1  GAGAGGTAGGGTACCAAACAGGATCTCAAAAGGGGTCAGGCTAAAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTAGGGTACCAAACAGGATCTCAAAAGGGGTCAGGCTAAAATGGT  650

seq1  AGGGCATGTTCCAGGCTCAGAACAGGGCCAGGGAAAGGAGCATGGCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGTTCCAGGCTCAGAACAGGGCCAGGGAAAGGAGCATGGCCCAG  700

seq1  TCACTGATAGTGTCCAAGTACAATTTAATTAAGGTCTCTTTTAGGATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATAGTGTCCAAGTACAATTTAATTAAGGTCTCTTTTAGGATTAT  750

seq1  GT  752
      ||
seq2  GT  752