BAC Information

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BAC

Clone NameB6Ng01-202H13
Chromosome4 (Build37)
Map Location 111,789,698 - 111,790,860
singlet/doubletsinglet
Overlap gene9530098N22Rik
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781
Downstream geneA430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202H13.bB6Ng01-202H13.g
ACCGA022955GA022956
length1,1411,206
definitionB6Ng01-202H13.b B6Ng01-202H13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatctttaaagacacagtggtatgcaccaccatcatcaacag
ttacattaagaatcctgaggatcactttcccctcattaaaggcatcagtc
aggagttctgtccgttctacatacttagacatagtttctccatgtaggtt
tttaccattacggtataggtgcacaggttgtgtataacggttccgaaacc
agcgaatctccatgtgttgtgcttgttgtggtggggacaattgacaattg
agttctacatttccacccaatgtagccaatatgggcctctgtgagccaat
cactgtaaagtgtcctgtgaaagaatacaatagtcaaaagagtgtaaatt
agtaaacatgatcacaaacttattgaaatcattctctctgttgagccttc
tgtcttcttcttgtatcacaagcatccatgcatacatcacttaatatcaa
cttgttcattctgtcagcatattagttataattatttatttgatgcagca
gcataaatgttactactaatagagaaattcttcaggacatatgggaggtg
ctgagccacttatagacaggctggattcaaggcaatatgtagcattgggt
aaagaaaattgcaatagccatgtcatgtagtggacattttaatgagactt
caggcacagtaaactatccacagcatgtacgtcctgtggtatatgcacag
tatttgtagatgagaatacggtaagcaccgatgccccttttgtttaatat
tctactacttatattatacagatgaagggctcccatctccattgctgtgg
tatgttcaataagaggtctgaattttatggtattttctaaatatgtccat
gtgcccaagtgttcctggttgaccctggtaactttatacatgttatttcc
tttacttgtttaagttatttttaattttgttcctcgtgatttatattgag
ttgctaaatatgggtacttgcacaaatatgtaagttattctgacacagca
tgtgcactcaattgtcgcaactaggtactataaatgagtcactcagccat
agtctgctgaaagctactgttccacatgatgtaagtaatagagcggacac
agctgatactacctaataagatgaagttgctcaaatgtgcc
gaattccaagctcaacttggaattttctaggagccattggaacactggta
gaagcttagctaaatgtcaaaagtcaatctttaaaggcacttttaataaa
acaatactgaaagagagcatacaccagactaacacggggacagggtttga
gtgtacaggctatgagaatgccaagtttccaggaggcatagtttccttga
aactcctcacctcctgactgccttcaggcctttccgacctgtcaggcaga
cctcactggagtgggtgtagcagtatggcaaaggacaatcaggcaaggtg
agaggcttcaaaatggaaaaagtcttttagcaattaaacatacgatagag
ggttaatatctgaaacatataaagaactaaaaattggttaaaaatggttg
agaaacatttagagaattgtgtaatatacttagtcattagatcatacaaa
tcaaaactactttgccacttcattttaatttaatcagtatagctgaggtc
aatgaaataaacaaaaggatatgggaaacaagaaaggcttattcaatttt
ggtgagagtgaaaacctgtacaaccactatggaaatcaaggggtggttca
tcaggaagctgggaatagatcttcttcaaggttcagctgtaccactgcag
tgcagacaaccaaaagactctacaccctaccacagaaacacttgcttttc
ctgttcattgtttccatgctcttaatagccagaaattggaaacagcttag
atgtccatcagtggataaatagaaaatggagggctggcgagatggctcag
tggttatgagcagtgactgctcttccgaaggtcctgagctcaaatcccag
caaccacatggtggctcacaaccatccataacgaaatctgatgccctctt
ctggagtatctgaggacagctacagtgtactttacatataataaataaat
aaatctacaaaagaaaagaaatggaaatatctcttgtttacacaatgtgc
tatgttcagctcttaaaaaataaaaccatggagcctcattaggaatgttt
agaagaataaaaaaaaattctgagtgctaaccaaatatgattgtattggc
ccttaatatgtgtattacttttagccttccaataggcttacctaccagtc
agttaaatacaggaatataggaacttccaattaagggggactctgctgtg
tagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111789698_111790860
seq2: B6Ng01-202H13.b_47_1187 (reverse)

seq1  GGCACAATTTTGAGCAAATTTTCATCTTTATTTAGTGTAGTATTCAGGCT  50
      ||||||  |||||||||   ||||||||   |||| |||||| ||| |||
seq2  GGCACA--TTTGAGCAA--CTTCATCTT--ATTAG-GTAGTA-TCA-GCT  41

seq1  GTGGTCTGCTCTATTTTACTTTACATCATGTGGAACAGTAGCTTTCAAGC  100
      || ||| ||||||  |||| |||||||||||||||||||||||||| |||
seq2  GT-GTCCGCTCTA--TTAC-TTACATCATGTGGAACAGTAGCTTTC-AGC  86

seq1  AGACTATTGCCCTGAGTGACTCCATTTTATAGTACCCTAGTTTGCGACAA  150
      ||||||| |  |||||||||||   ||||||||| ||||| |||||||||
seq2  AGACTATGG--CTGAGTGACTC--ATTTATAGTA-CCTAG-TTGCGACAA  130

seq1  TTTGAGTGCACATGCTGTGTCAGAATAACTTTACATATTTGTGCAAGTAC  200
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -TTGAGTGCACATGCTGTGTCAGAATAAC-TTACATATTTGTGCAAGTAC  178

seq1  CCATATTTAGCAACTCAATATAAATCACGAGGAACAAAATTAAAAATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAGCAACTCAATATAAATCACGAGGAACAAAATTAAAAATAAC  228

seq1  TTAAACAAGTAAAGGAAATAACATGTATAAAGTTACCAGGGTCAACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAGTAAAGGAAATAACATGTATAAAGTTACCAGGGTCAACCAGG  278

seq1  AACACTTGGGCACATGGACATATTTAGAAAATACCATAAAATTCAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGGCACATGGACATATTTAGAAAATACCATAAAATTCAGACCT  328

seq1  CTTATTGAACATACCACAGCAATGGAGATGGGAGCCCTTCATCTGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGAACATACCACAGCAATGGAGATGGGAGCCCTTCATCTGTATAA  378

seq1  TATAAGTAGTAGAATATTAAACAAAAGGGGCATCGGTGCTTACCGTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTAGTAGAATATTAAACAAAAGGGGCATCGGTGCTTACCGTATTC  428

seq1  TCATCTACAAATACTGTGCATATACCACAGGACGTACATGCTGTGGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACAAATACTGTGCATATACCACAGGACGTACATGCTGTGGATAG  478

seq1  TTTACTGTGCCTGAAGTCTCATTAAAATGTCCACTACATGACATGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTGCCTGAAGTCTCATTAAAATGTCCACTACATGACATGGCTAT  528

seq1  TGCAATTTTCTTTACCCAATGCTACATATTGCCTTGAATCCAGCCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTTCTTTACCCAATGCTACATATTGCCTTGAATCCAGCCTGTCT  578

seq1  ATAAGTGGCTCAGCACCTCCCATATGTCCTGAAGAATTTCTCTATTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGCTCAGCACCTCCCATATGTCCTGAAGAATTTCTCTATTAGTA  628

seq1  GTAACATTTATGCTGCTGCATCAAATAAATAATTATAACTAATATGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTTATGCTGCTGCATCAAATAAATAATTATAACTAATATGCTGA  678

seq1  CAGAATGAACAAGTTGATATTAAGTGATGTATGCATGGATGCTTGTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAACAAGTTGATATTAAGTGATGTATGCATGGATGCTTGTGATA  728

seq1  CAAGAAGAAGACAGAAGGCTCAACAGAGAGAATGATTTCAATAAGTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAAGACAGAAGGCTCAACAGAGAGAATGATTTCAATAAGTTTGT  778

seq1  GATCATGTTTACTAATTTACACTCTTTTGACTATTGTATTCTTTCACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTTTACTAATTTACACTCTTTTGACTATTGTATTCTTTCACAGG  828

seq1  ACACTTTACAGTGATTGGCTCACAGAGGCCCATATTGGCTACATTGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACAGTGATTGGCTCACAGAGGCCCATATTGGCTACATTGGGTG  878

seq1  GAAATGTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGAACTCAATTGTCAATTGTCCCCACCACAACAAGCACAACAC  928

seq1  ATGGAGATTCGCTGGTTTCGGAACCGTTATACACAACCTGTGCACCTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATTCGCTGGTTTCGGAACCGTTATACACAACCTGTGCACCTATA  978

seq1  CCGTAATGGTAAAAACCTACATGGAGAAACTATGTCTAAGTATGTAGAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATGGTAAAAACCTACATGGAGAAACTATGTCTAAGTATGTAGAAC  1028

seq1  GGACAGAACTCCTGACTGATGCCTTTAATGAGGGGAAAGTGATCCTCAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAACTCCTGACTGATGCCTTTAATGAGGGGAAAGTGATCCTCAGG  1078

seq1  ATTCTTAATGTAACTGTTGATGATGGTGGTGCATACCACTGTGTCTTTAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATGTAACTGTTGATGATGGTGGTGCATACCACTGTGTCTTTAA  1128

seq1  AGATGGTGAATTC  1163
      |||||||||||||
seq2  AGATGGTGAATTC  1141