BAC Information

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BAC

Clone NameB6Ng01-202I21
Chromosome10 (Build37)4 (Build37)
Map Location 124,925,777 - 124,926,01813,735,124 - 13,736,203
singlet/doubletsingletsinglet
Overlap geneLOC100042992
Upstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
Downstream geneLOC668317, LOC100042994, Lrig3, LOC100043547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202I21.bB6Ng01-202I21.g
ACCGA023016GA023017
length4921,106
definitionB6Ng01-202I21.b B6Ng01-202I21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,925,777 - 124,926,018)(13,735,124 - 13,736,203)
sequence
tagagcccagttccaagtgttatacctacaacacaactcctgcacttaag
gctcagagatcattgtaaaagaagaggcagaaggattatgtgactagaag
gagctgaatgtgagattgtattctagaagtgttagagaaattacatccat
gaagtttcatcaatagggctatctaaaaaggccttaacaagataacaaca
gatacgctggtgtagatgaggtgaagctcggaatgcctcaactgtacaca
cagaaccacaagcaactaagggatgctgaagttggaaacagttttcccag
ggaagagcataccaattggttattcaataccaaatagtcaaccatagcaa
ataaataacttgctcaatccatataaggctgctttatattttgtgttgta
ttcatgtgcgtgagtgcatgcacatgtgtgtatatgtgtgtgtgtgtgta
taatatatatcaaaagctgccgtgaatttgtaagaaagcaag

gaattcagaaccagagaagaaaggagaaaaactgcttagggaggtttata
gagtcaaatgtctctaaaacaaagggacagggttacatagttatgtgtgg
cacaacaattaatggaaaaagaggctgtgaattcgaaagataccaaggaa
gggtggaaggatagatgggcaagcataggaggaggaaaggaaaggggtat
taaagtaattattacattacatattatataaactataatttatatatttt
ttattaaattatatactgtataacattatataaaatgtattataatatca
aaagcaaaagaaataaaaaaaagaaagcagattaattggttatctaaaac
taaaagcatacatacaagtatcattatacagacagggtataattaggcat
gtagaaatatttacacatatgcatgaccagtgcacacacacacatgcaca
aacacacacatatatatgtatatacacatacacatatacacatacacaca
cacacacacacacacacacacacacacacatatatataccggaactcact
ttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgttact
ttctgtttttttgttgttttgattttgttattgagataagatttcactgt
atttttgaacttgaaccaattctttaatcacaagaggttaaagaacgtca
ggtgtgccttacaatggactattcagattttttcttcttctttcttttct
ttttccccctttatttctttttattttttcatgttctttggagttctttt
agtgagtgtgtgtgaacattcacgttgtggggtgtacacatgtcatggtg
cctatgcggaagtcaaaggaaaactgtctctctattgttatccctgttgg
gttagcatcttgcctctctcactcatgaagccgggttgcataagaaacct
ttttgctaaactatgataaggcagtgcccacaagtgagaggcttttctga
aaatccaagaataaaaagggtctaaaaaagaagttttgagtttttctaaa
taattgtgaacaagaaaaacaaaagtgttgaaaactcatgaattgaattt
aaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_124925777_124926018
seq2: B6Ng01-202I21.b_86_547

seq1  ACACAAAGCTCCTGCACTTAAGGTTCAGGGATCA-TGTGGAAGAGGGAGC  49
      ||||||  ||||||||||||||| |||| ||||| |||  |||| |  ||
seq2  ACACAA--CTCCTGCACTTAAGGCTCAGAGATCATTGTAAAAGAAGAGGC  48

seq1  AGAA--ATCCTGTAAAAGCCAGAGTAACAGGAAGTTTACTGTGAGATTGT  97
      ||||  ||  |||        || ||  ||| || | | |||||||||||
seq2  AGAAGGATTATGT--------GACTAGAAGG-AGCTGAATGTGAGATTGT  89

seq1  GTCCCCTAGAAATGCCAAATAAAT----------AAGCCTCGCTAGTATG  137
       |   |||||| ||  | | ||||          |||  ||   | || |
seq2  AT--TCTAGAAGTGTTAGAGAAATTACATCCATGAAGTTTCATCAATAGG  137

seq1  GATACCCAAACAAGACTT-------GAGCAAC---TTGGCATTTGCCAAT  177
      | || | ||| | | |||        | ||||   |  ||   ||   ||
seq2  GCTATCTAAAAAGGCCTTAACAAGATAACAACAGATACGCTGGTGTAGAT  187

seq1  ----------ACCAAATG-GTC-ACGGTA-ACATAGAA----AAG-----  205
                 |  ||||  || || ||| ||| ||||    |||     
seq2  GAGGTGAAGCTCGGAATGCCTCAACTGTACACACAGAACCACAAGCAACT  237

seq1  GGGGGAGGGGGAGGT---AAAGAATTT------GTAAGAAAGCAAG----  242
        |||| |  || ||   ||| | |||      | |||  ||||      
seq2  AAGGGATGCTGAAGTTGGAAACAGTTTTCCCAGGGAAG--AGCATACCAA  285

seq1  --------------------------------------------------  242
                                                        
seq2  TTGGTTATTCAATACCAAATAGTCAACCATAGCAAATAAATAACTTGCTC  335

seq1  --------------------------------------------------  242
                                                        
seq2  AATCCATATAAGGCTGCTTTATATTTTGTGTTGTATTCATGTGCGTGAGT  385

seq1  --------------------------------------------------  242
                                                        
seq2  GCATGCACATGTGTGTATATGTGTGTGTGTGTGTATAATATATATCAAAA  435

seq1  ---------------------------  242
                                 
seq2  GCTGCCGTGAATTTGTAAGAAAGCAAG  462


seq1: chr4_13735124_13736203
seq2: B6Ng01-202I21.g_67_1172

seq1  GAATTCAGAACCAGAGAAGAAAGGAGAAAAACTGCTTAGGGAGGTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACCAGAGAAGAAAGGAGAAAAACTGCTTAGGGAGGTTTATA  50

seq1  GAGTCAAATGTCTCTAAAACAAAGGGACAGGGTTACATAGTTATGTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAATGTCTCTAAAACAAAGGGACAGGGTTACATAGTTATGTGTGG  100

seq1  CACAACAATTAATGGAAAAAGAGGCTGTGAATTCGAAAGATACCAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAATTAATGGAAAAAGAGGCTGTGAATTCGAAAGATACCAAGGAA  150

seq1  GGGTGGAAGGATAGATGGGCAAGCATAGGAGGAGGAAAGGAAAGGGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGGATAGATGGGCAAGCATAGGAGGAGGAAAGGAAAGGGGTAT  200

seq1  TAAAGTAATTATTACATTACATATTATATAAACTATAATTTATATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAATTATTACATTACATATTATATAAACTATAATTTATATATTTT  250

seq1  TTATTAAATTATATACTGTATAACATTATATAAAATGTATTATAATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATTATATACTGTATAACATTATATAAAATGTATTATAATATCA  300

seq1  AAAGCAAAAGAAATAAAAAAAAGAAAGCAGATTAATTGGTTATCTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAAGAAATAAAAAAAAGAAAGCAGATTAATTGGTTATCTAAAAC  350

seq1  TAAAAGCATACATACAAGTATCATTATACAGACAGGGTATAATTAGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCATACATACAAGTATCATTATACAGACAGGGTATAATTAGGCAT  400

seq1  GTAGAAATATTTACACATATGCATGACCAGTGCACACACACACATGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATATTTACACATATGCATGACCAGTGCACACACACACATGCACA  450

seq1  AACACACACATATATATGTATATACACATACACATATACACATACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACATATATATGTATATACACATACACATATACACATACACACA  500

seq1  CACACACACACACACACACACACACACACATATATATACCGGAACTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATATATATACCGGAACTCACT  550

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGTTACT  600

seq1  TTCTGTTTTTTTGTTGTTTTGATTTTGTTATTGAGATAAGATTTCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTTTTGTTGTTTTGATTTTGTTATTGAGATAAGATTTCACTGT  650

seq1  ATTTTTGAACTTGAACCAATTCTTTAATCACAAGAGGTTAAAGAACGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAACTTGAACCAATTCTTTAATCACAAGAGGTTAAAGAACGTCA  700

seq1  GGTGTGCCTTACAATGGACTATTCAGATTTTTTCTTCTTCTTTCTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCCTTACAATGGACTATTCAGATTTTTTCTTCTTCTTTCTTTTCT  750

seq1  TTTTCCCCCTTTATTTCTTTTTATTTTTTCATGTTCTTTGGAGTTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCCTTTATTTCTTTTTATTTTTTCATGTTCTTTGGAGTTCTTTT  800

seq1  AGTGAGTGTGTGTGAACATTCACGTTGT-GGGTGTACACATGTCATGGTG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTGAGTGTGTGTGAACATTCACGTTGTGGGGTGTACACATGTCATGGTG  850

seq1  CCTATGCGGAAGTCAAAGGAAAACTGTCTCTCTATTGTTAT-CCTGTTGG  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTATGCGGAAGTCAAAGGAAAACTGTCTCTCTATTGTTATCCCTGTTGG  900

seq1  GTTAGCATCTTGCCTCTCTCACTCATGAAGCCGGG-TGCAT-AGAA--CC  944
      ||||||||||||||||||||||||||||||||||| ||||| ||||  | 
seq2  GTTAGCATCTTGCCTCTCTCACTCATGAAGCCGGGTTGCATAAGAAACCT  950

seq1  TTTTGCTAAACTATGAT-AGGCAGTGCCCACAGGTGAGAGGC-TTTCTG-  991
      ||||||||||||||||| |||||||||||||| ||||||||| |||||| 
seq2  TTTTGCTAAACTATGATAAGGCAGTGCCCACAAGTGAGAGGCTTTTCTGA  1000

seq1  AAATCC-AGA--TAAAAGGGTCTAAAA---GAGTTTTGAG-TTTTCTAAA  1034
      |||||| |||   ||||||||||||||    ||||||||| |||||||||
seq2  AAATCCAAGAATAAAAAGGGTCTAAAAAAGAAGTTTTGAGTTTTTCTAAA  1050

seq1  T-ATTGTG----ACAGAAACAAAGGTG-TGAAAAC-CATG-ATTGA--TT  1074
      | ||||||    | | ||||||| ||| ||||||| |||| |||||  ||
seq2  TAATTGTGAACAAGAAAAACAAAAGTGTTGAAAACTCATGAATTGAATTT  1100

seq1  TAGGAT  1080
       |||||
seq2  AAGGAT  1106


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