BAC Information

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BAC

Clone NameB6Ng01-202P12
Chromosome4 (Build37)
Map Location 135,955,682 - 136,145,089
singlet/doubletdoublet
Overlap geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080
Upstream geneLOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
Downstream geneLOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202P12.bB6Ng01-202P12.g
ACCGA023315GA023316
length1,055616
definitionB6Ng01-202P12.b B6Ng01-202P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,144,042 - 136,145,089)(135,955,682 - 135,956,297)
sequence
gaattccaggacagtcaaggcaacagagaaacctgtatcaaaaaattcct
ccaagtgtaataattccttattcactgtattcagcacaccacaacaactc
tttgtacagttttaatcctttgttgcaagtgtagttctgtagtctaagaa
ttattaaaaaaataagactaagaactattcaaaaactaagacaagatcct
ccaccataatattcagtctgaaagggctacagatattagcagctagtagg
ttgtaggcatgaagcaccataataaatgtatttaaagaaaactgtagtga
gaattgagaagttagtttaatttttttaaagtggtagataaaattgtatg
actttgctgtatataatctgctttaaagaaatgtatatttgaagagtgtt
ataatctagtgaggttaccttgataagatcattggtttttgtttttgttt
ttgttttttttgataaggctacttaacatatactcttggcatttttctaa
agaacacagcttattggttgttgtttactatagtcactgtgttgtatcat
agatttttttttttagagaattgtttgcaggctaatgtttccgtcctaga
ttggattttgaaaattttatgttaaacatgaagaactgatgttaggtttt
tataaagtggttttaaattcttgattttgaactgttaattgcttttgact
ggtaagaggaaccattgaatactgtgtttggtcttagagagattaccctg
cttctcttcgctttgcttcttttttttttttttgaattgtgaaaggtaat
atattttactctacatgattttacagtttttattgtggacaaacaagtga
attgagttctacaaagttggtgcctttaaattgccatctgtagagaaatt
gtctttttttttttaaacctccttattgggtgcgtgaatttcacattggg
cacccagtccctcttatctctctctcctattatcttaccctccacccttt
gcagctttccacgatcttgtaatagcagtctctgtccttgatgaaagcct
tagtg
gaattcccggttagcaaagcaacttgttccaagacacacagctgaattga
gatttgactccagacagtgaggacggaaggcctagctatcaaacctccct
ttgctcccagtcagactgaagactgctttggactgaaactgctgggaatc
atgagattttggagatttggaaacggccagtgtcttagtcagggtttcta
ttcctgcacaaacatcatgaccaagaagcaagttggggaggaaagggttt
atttggcttacacttccatactgctgttcatcaccaaggaagtcaggact
ggaactcaagcaggtcagaaagcaggagccgatgcagaggccatggaggg
atgttctttactggcttgcctcccctggcttgctcagcctgctctcttat
agaacccaagactaccagcccagagatggtcccacccacaaggggccttt
cccccttgatcactaattgagaaaatgccttagagttggatctcatggag
gcatttcctcaactgaggctcctttctctgtgataaccccagctgtgtca
agttgacacaaaactagcctgtacagtcagattttggaatggagatccag
agggttcagagtagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136144042_136145089
seq2: B6Ng01-202P12.b_51_1105 (reverse)

seq1  CACTAAGGC-TTCTACAAGGACAGAGACTGCT-TTTCAGTTTCGGGGGAA  48
      ||||||||| |||  ||||||||||||||||| || ||   ||| || ||
seq2  CACTAAGGCTTTCATCAAGGACAGAGACTGCTATTACAAGATCGTGGAAA  50

seq1  GCTGC-AAGGGTGGAGGGT-AGATACTAGGAGAGAGGAGATAAGAGGGAC  96
      ||||| ||||||||||||| ||||| ||||||||| ||||||||||||||
seq2  GCTGCAAAGGGTGGAGGGTAAGATAATAGGAGAGA-GAGATAAGAGGGAC  99

seq1  TGGGTGCACAATGTGAAATTCACGCACACAATAA-GAAGTTTAAAAAAAA  145
      ||||||| ||||||||||||||||||| |||||| || ||||||||||||
seq2  TGGGTGCCCAATGTGAAATTCACGCACCCAATAAGGAGGTTTAAAAAAAA  149

seq1  AAAGACAATTTCTCTACAGATTGCAATTT-AAGGCACC-ACTTTGTAGAA  193
      ||||||||||||||||||||| ||||||| |||||||| |||||||||||
seq2  AAAGACAATTTCTCTACAGATGGCAATTTAAAGGCACCAACTTTGTAGAA  199

seq1  CTCATTTCACTTGTTTTGTCCACAAT-AAAACTGT-AAATCATGTAGAGT  241
      |||| |||||||| |||||||||||| |||||||| ||||||||||||||
seq2  CTCAATTCACTTG-TTTGTCCACAATAAAAACTGTAAAATCATGTAGAGT  248

seq1  AAAATATATTACCTTTCACAATTCAAAAAAAAAAAAAAGAAGCAAAGCGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTACCTTTCACAATTCAAAAAAAAAAAAAAGAAGCAAAGCGA  298

seq1  AGAGAAGCAGGGTAATCTCTCTAAGACCAAACACAGTATTCAATGGTTCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAGGGTAATCTCTCTAAGACCAAACACAGTATTCAATGGTTCC  348

seq1  TCTTACCAGTCAAAAGCAATTAACAGTTCAAAATCAAGAATTTAAAACCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAGTCAAAAGCAATTAACAGTTCAAAATCAAGAATTTAAAACCA  398

seq1  CTTTATAAAAACCTAACATCAGTTCTTCATGTTTAACATAAAATTTTCAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAAAACCTAACATCAGTTCTTCATGTTTAACATAAAATTTTCAA  448

seq1  AATCCAATCTAGGACGGAAACATTAGCCTGCAAACAATTCTCTAAAAAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATCTAGGACGGAAACATTAGCCTGCAAACAATTCTCTAAAAAAA  498

seq1  AAAATCTATGATACAACACAGTGACTATAGTAAACAACAACCAATAAGCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATGATACAACACAGTGACTATAGTAAACAACAACCAATAAGCT  548

seq1  GTGTTCTTTAGAAAAATGCCAAGAGTATATGTTAAGTAGCCTTATCAAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTTAGAAAAATGCCAAGAGTATATGTTAAGTAGCCTTATCAAAA  598

seq1  AAAACAAAAACAAAAACAAAAACCAATGATCTTATCAAGGTAACCTCACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAACAAAAACCAATGATCTTATCAAGGTAACCTCACT  648

seq1  AGATTATAACACTCTTCAAATATACATTTCTTTAAAGCAGATTATATACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATAACACTCTTCAAATATACATTTCTTTAAAGCAGATTATATACA  698

seq1  GCAAAGTCATACAATTTTATCTACCACTTTAAAAAAATTAAACTAACTTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCATACAATTTTATCTACCACTTTAAAAAAATTAAACTAACTTC  748

seq1  TCAATTCTCACTACAGTTTTCTTTAAATACATTTATTATGGTGCTTCATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTCACTACAGTTTTCTTTAAATACATTTATTATGGTGCTTCATG  798

seq1  CCTACAACCTACTAGCTGCTAATATCTGTAGCCCTTTCAGACTGAATATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAACCTACTAGCTGCTAATATCTGTAGCCCTTTCAGACTGAATATT  848

seq1  ATGGTGGAGGATCTTGTCTTAGTTTTTGAATAGTTCTTAGTCTTATTTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAGGATCTTGTCTTAGTTTTTGAATAGTTCTTAGTCTTATTTTT  898

seq1  TTAATAATTCTTAGACTACAGAACTACACTTGCAACAAAGGATTAAAACT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATTCTTAGACTACAGAACTACACTTGCAACAAAGGATTAAAACT  948

seq1  GTACAAAGAGTTGTTGTGGTGTGCTGAATACAGTGAATAAGGAATTATTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGAGTTGTTGTGGTGTGCTGAATACAGTGAATAAGGAATTATTA  998

seq1  CACTTGGAGGAATTTTTTGATACAGGTTTCTCTGTTGCCTTGACTGTCCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGGAATTTTTTGATACAGGTTTCTCTGTTGCCTTGACTGTCCT  1048

seq1  GGAATTC  1048
      |||||||
seq2  GGAATTC  1055

seq1: chr4_135955682_135956297
seq2: B6Ng01-202P12.g_68_683

seq1  GAATTCCCGGTTAGCAAAGCAACTTGTTCCAAGACACACAGCTGAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGTTAGCAAAGCAACTTGTTCCAAGACACACAGCTGAATTGA  50

seq1  GATTTGACTCCAGACAGTGAGGACGGAAGGCCTAGCTATCAAACCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGACTCCAGACAGTGAGGACGGAAGGCCTAGCTATCAAACCTCCCT  100

seq1  TTGCTCCCAGTCAGACTGAAGACTGCTTTGGACTGAAACTGCTGGGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCCAGTCAGACTGAAGACTGCTTTGGACTGAAACTGCTGGGAATC  150

seq1  ATGAGATTTTGGAGATTTGGAAACGGCCAGTGTCTTAGTCAGGGTTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTTGGAGATTTGGAAACGGCCAGTGTCTTAGTCAGGGTTTCTA  200

seq1  TTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTT  250

seq1  ATTTGGCTTACACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTACACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACT  300

seq1  GGAACTCAAGCAGGTCAGAAAGCAGGAGCCGATGCAGAGGCCATGGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAAGCAGGTCAGAAAGCAGGAGCCGATGCAGAGGCCATGGAGGG  350

seq1  ATGTTCTTTACTGGCTTGCCTCCCCTGGCTTGCTCAGCCTGCTCTCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTACTGGCTTGCCTCCCCTGGCTTGCTCAGCCTGCTCTCTTAT  400

seq1  AGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTT  450

seq1  CCCCCTTGATCACTAATTGAGAAAATGCCTTAGAGTTGGATCTCATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTGATCACTAATTGAGAAAATGCCTTAGAGTTGGATCTCATGGAG  500

seq1  GCATTTCCTCAACTGAGGCTCCTTTCTCTGTGATAACCCCAGCTGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCTCAACTGAGGCTCCTTTCTCTGTGATAACCCCAGCTGTGTCA  550

seq1  AGTTGACACAAAACTAGCCAGTACAGCCAGATTTTGGAATGGAGATCCAG  600
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  AGTTGACACAAAACTAGCCTGTACAGTCAGATTTTGGAATGGAGATCCAG  600

seq1  AGGGTTCAGAGTAGTT  616
      ||||||||||||||||
seq2  AGGGTTCAGAGTAGTT  616