BAC Information

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BAC

Clone NameB6Ng01-204P22
Chromosome4 (Build37)
Map Location 124,705,424 - 124,898,157
singlet/doubletdoublet
Overlap geneGnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204P22.bB6Ng01-204P22.g
ACCGA024792GA024793
length1,019415
definitionB6Ng01-204P22.b B6Ng01-204P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,705,424 - 124,706,424)(124,897,737 - 124,898,157)
sequence
gaattccctgggtctcatggggccctttagacaagaggtacccccccccc
acctctgtccttattcatccaagaaagatttagtaaggccttattttatg
tcagatgcctgttcaaagtgtttttaatttttaagcccaggggaccttta
catacttaactgcacctttgtgacagtctctctctctctctctctctctc
tcaagataatgtctcagagggctgtggtggcacaccgccacactggaagt
ggcacacactttaatcccagcactctggaggccagcatggactacagagt
gagttccagggcagctagggctacaaaaaggaaccctatctcaaaacaca
agcaaacaaacaaacaaaaagataatgtctttttctacagtttggcttgt
atcttcctatatagcccaggctagactagccttgaactcacggcagatag
tctaacctcaaatgctgaggttagaggctcatgccaacacactcagcttt
gttacgttctggggacacggaggtgaataacgtacctgatttccattttc
ctaagcttatggcctagacccaagaaagcagccaatgctcttgtgaacag
agtcatttcgggtagtggcatgtgccgtgaagtgaggtgggatggaataa
caggaagagagtggctgacttaaatcagtaactcagcaaatacttctgcc
aaaggagctgctgccagatagatcaagagaatgttagttccatttaaaaa
caagtgaacagtgaaaaaaatctttttggtgtagggtctctcttatgtag
ctcaagctggaattttgaacttgtgacaatcctcctgccttagcctcttc
aagtatattcatgtttcccttagatcctttaagttatcctaaacgatgat
tggaatataagcctagaaagtgtggttatttttattttttaaacctgaaa
ttcaattttcactgtcctggtatttttttttcttgatgttcttctccccc
cttacctggctttccccct
agtcactctaacacctcaatgtccagataaaagcctgaagctcagggtgt
tagggatgggggttagggaaatggcacttgcctgaaaccgcacagcaact
ggaaaatctgagagctgaatccatgtccctgtttctctgagcacccactc
atcacacccttccctcagaaggtagggaaggttccggtagccaagtgaat
caaacaaaagaagcaagcctggaagaatcaaagtcccagatgtctgggac
ttttctgtcagccaacctgcagatcctgtccagcctcctaaggcctcccc
tgcctctgcccctacaggagtaagtggggagtaagggattagcaagcaga
gggcgctcttccaggcatctctgctcctgcataatacagcaggaggaggt
gggtggggcttgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124705424_124706424
seq2: B6Ng01-204P22.b_45_1063

seq1  GAATTCCCTGGGTCTCATGGGGCCCTTTAGACAAGAGGTACCCCCCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGGTCTCATGGGGCCCTTTAGACAAGAGGTACCCCCCCCCC  50

seq1  ACCTCTGTCCTTATTCATCCAAGAAAGATTTAGTAAGGCCTTATTTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTCCTTATTCATCCAAGAAAGATTTAGTAAGGCCTTATTTTATG  100

seq1  TCAGATGCCTGTTCAAAGTGTTTTTAATTTTTAAGCCCAGGGGACCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCCTGTTCAAAGTGTTTTTAATTTTTAAGCCCAGGGGACCTTTA  150

seq1  CATACTTAACTGCACCTTTGTGACAGTCTCTCTCTCTCTCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTAACTGCACCTTTGTGACAGTCTCTCTCTCTCTCTCTCTCTCTC  200

seq1  TCAAGATAATGTCTCAGAGGGCTGTGGTGGCACACCGCCACACTGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATAATGTCTCAGAGGGCTGTGGTGGCACACCGCCACACTGGAAGT  250

seq1  GGCACACACTTTAATCCCAGCACTCTGGAGGCCAGCATGGACTACAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACTTTAATCCCAGCACTCTGGAGGCCAGCATGGACTACAGAGT  300

seq1  GAGTTCCAGGGCAGCTAGGGCTACAAAAAGGAACCCTATCTCAAAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGGCAGCTAGGGCTACAAAAAGGAACCCTATCTCAAAACACA  350

seq1  AGCAAACAAACAAACAAAAAGATAATGTCTTTTTCTACAGTTTGGCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAAACAAACAAAAAGATAATGTCTTTTTCTACAGTTTGGCTTGT  400

seq1  ATCTTCCTATATAGCCCAGGCTAGACTAGCCTTGAACTCACGGCAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTATATAGCCCAGGCTAGACTAGCCTTGAACTCACGGCAGATAG  450

seq1  TCTAACCTCAAATGCTGAGGTTAGAGGCTCATGCCAACACACTCAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTCAAATGCTGAGGTTAGAGGCTCATGCCAACACACTCAGCTTT  500

seq1  GTTACGTTCTGGGGACACGGAGGTGAATAACGTACCTGATTTCCATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGTTCTGGGGACACGGAGGTGAATAACGTACCTGATTTCCATTTTC  550

seq1  CTAAGCTTATGGCCTAGACCCAAGAAAGCAGCCAATGCTCTTGTGAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTATGGCCTAGACCCAAGAAAGCAGCCAATGCTCTTGTGAACAG  600

seq1  AGTCATTTCGGGTAGTGGCATGTGCCGTGAAGTGAGGTGGGATGGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCGGGTAGTGGCATGTGCCGTGAAGTGAGGTGGGATGGAATAA  650

seq1  CAGGAAGAGAGTGGCTGACTTAAATCAGTAACTCAGCAAATACTTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAGAGTGGCTGACTTAAATCAGTAACTCAGCAAATACTTCTGCC  700

seq1  AAAGGAGCTGCTGCCAGATAGATCAAGAGAATG-TAGTTCCATTTAAAAA  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGGAGCTGCTGCCAGATAGATCAAGAGAATGTTAGTTCCATTTAAAAA  750

seq1  CAAGTGAACAGTGAAAAAAATC-TTTTGGTGTAGGGTCTCTC-TATGTAG  797
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CAAGTGAACAGTGAAAAAAATCTTTTTGGTGTAGGGTCTCTCTTATGTAG  800

seq1  CTCAAGCTGGA--TTTGAACTTGTGACAATCCTCCTGCCTTAGCCTC-TC  844
      |||||||||||  |||||||||||||||||||||||||||||||||| ||
seq2  CTCAAGCTGGAATTTTGAACTTGTGACAATCCTCCTGCCTTAGCCTCTTC  850

seq1  AAGTATA-TCATGTTT-CCTTAGATCCTTTAAGTTATCCTAAACGATGAT  892
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTATATTCATGTTTCCCTTAGATCCTTTAAGTTATCCTAAACGATGAT  900

seq1  TGGAATATAAG-CTAGAAAGTGTGTTTA--TTTATTTTT--AACCTGAAA  937
      ||||||||||| |||||||||||| |||  |||||||||  |||||||||
seq2  TGGAATATAAGCCTAGAAAGTGTGGTTATTTTTATTTTTTAAACCTGAAA  950

seq1  TTCAAATTTCACTGT-CTTGTA-TTTTTTTTCTTGATGTTCTCCTCCCCC  985
      ||||| ||||||||| || ||| ||||||||||||||||||| |||||||
seq2  TTCAATTTTCACTGTCCTGGTATTTTTTTTTCTTGATGTTCTTCTCCCCC  1000

seq1  CCT-CCTG--CTTCCCCCT  1001
      | | ||||   ||||||||
seq2  CTTACCTGGCTTTCCCCCT  1019

seq1: chr4_124897737_124898157
seq2: B6Ng01-204P22.g_67_487 (reverse)

seq1  ACCCAAGCCCCACCCACCTCCTCCTGCTGTCTTCTGCAGGAGCAGAGATG  50
      |||||||||||||||||||||||||||||| || ||||||||||||||||
seq2  ACCCAAGCCCCACCCACCTCCTCCTGCTGTATTATGCAGGAGCAGAGATG  50

seq1  CCTGGAAGAGCGCCCTCTGCTTGCTTATCCCTTACTCCCCACTTACTCCT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTGGAAGAGCGCCCTCTGCTTGCTAATCCCTTACTCCCCACTTACTCCT  100

seq1  GTAGGGGCAGAGGCAGGGGAGGCCTTAGGAGGCTGGACAGGATCTGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGCAGAGGCAGGGGAGGCCTTAGGAGGCTGGACAGGATCTGCAGG  150

seq1  TTGGCTGACAGAAAAGTCCCAGACATCTGGGACTTTGATTCTTCCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGACAGAAAAGTCCCAGACATCTGGGACTTTGATTCTTCCAGGCT  200

seq1  TGCTTCTTTTGTTTGATTCACTTGGCTACCGGAACCTTCCCTACCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTTGTTTGATTCACTTGGCTACCGGAACCTTCCCTACCTTCTG  250

seq1  AGGGAAGGGTGTGATGAGTGGGTGCTCAGAGAAACAGGGACATGGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGGTGTGATGAGTGGGTGCTCAGAGAAACAGGGACATGGATTCA  300

seq1  GCTCTCAGATTTTCCAGTTGCTGTGCGGTTTCAGGCAAGTGCCATTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGATTTTCCAGTTGCTGTGCGGTTTCAGGCAAGTGCCATTTCCC  350

seq1  TAACCCCCATCCCTAACACCCTGAGCTTCAGGCTTTTATCTGGACATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCCATCCCTAACACCCTGAGCTTCAGGCTTTTATCTGGACATTGA  400

seq1  GGTGTTAGAGTGACTGAATTC  421
      |||||||||||||||||||||
seq2  GGTGTTAGAGTGACTGAATTC  421