BAC Information

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BAC

Clone NameB6Ng01-205P20
Chromosome4 (Build37)
Map Location 30,720,552 - 30,859,389
singlet/doubletdoublet
Overlap geneLOC100040864
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205P20.bB6Ng01-205P20.g
ACCGA025524GA025525
length9631,137
definitionB6Ng01-205P20.b B6Ng01-205P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,720,552 - 30,721,506)(30,858,246 - 30,859,389)
sequence
gaattccaggacagctagagctacacagagaaaccctgtctcgaaagaaa
acaaaacaaaacaaacaaacaaaaaacaaaaacaaaaacaaaagaaaaaa
gatagctcagttctactgaagaacactagagagtgccagaaagttttaag
tcctcagaagtatgtccacaaaagcaaatgccagttgctgtgcagaatgg
atcaatgccagaaacaattataaaaccctaaaatttgaatattaagtaaa
aaaagagaaagagtggtggattgtaaaatttttgtaaggtgtaggagagc
cataactgtttgcttgaatatgttgcaggtacacaaagatgtctgtcatt
cattcatgtttatattagaagagaaagaaaaccttgattagcaagagatt
aagctctagcttcattaaactttcatttctgtagacaacacaagtttcca
tcaggacatgaagtatgcagctatgggctgtggagatatatacagaattg
tattgaacataattttggagctttagcaatagatgagaatattcagaaag
actgagagaagatcagtgcattaattagggtaccaataaatgactacatc
aaacacctgggctataaagacagtgttcagttgttgttggttttttgttt
tgttttgttttcatatacccatctcagtatgttgagactaatgtggtaca
catatcctcaggctccctaaggatgctggcatgtgagagagatgatttcc
cattggtgttatgattagtatagaagaattgtgtaggcctacctctagga
gacttcagtcatttttattaactgtaaatcaatagaagaaaagggagaaa
gactagatctagagacagcattacttccacagggtttgtagtacaatgca
aaaaaaccttccattttcaaaggagaaaatcaagggtcatctgcaattct
atagagggtttta

gaattcacagttcttgaggcaagctggaaatccatttgcatgacacaact
cacattcacatattagatgtgtatagaaatcaagtatgtcccattgtgtc
atgcttgaatttttagatttacttctcagaaaattgggacataaaaagct
ttgaatatattcctttgagtttcatgctttgttttgttttgattttgcgt
gtttgctgtgcttttattatttttactctagcagggatgaaaaaacaaaa
tgaaacaataatgtaacttacatacaaagacattgcattatataatatat
gccctgagtgagatgaatttatacttgctccacgaaatattgcaaaactt
ctctttttttggtatcagagatttcctaaactttcttattttagcttcat
tcatatatatatatatatatatataaaacatgctaggattctgtcatcta
tgtatgaattaaggttctcaaatgtgggctcatgcactcttttatttgaa
tataaattgttattgttttaaattctttgttttgattaattttcaggtta
taactgacctaaatcttcagaatttctgtgaattaatatattaaacctat
gaccttggtatattgactctttttccattaacaggatattctgagtttca
gtacaaaactcatgtcaaattactctgttacagacaaaatgaacttaaga
taagtttcatttggagacccagatgtaagcatgtaaaatgtctatgtatg
tgtatgtacacatgtgcaggcaagagtttgacacttctcagttttcaact
tctcagttgaattccttctcagttttctccaccctatttttgaggcagag
tctctttgaaccaggagctttccacttcttcaggactaggaagccatgag
gtcaacagaacctctttgtttcctgttcttagagctggggtcagaggcat
gtccgacatcctggctcttatgtgtatgctgagaatcagacttcaatgtt
acaacaatgcttattcagcaaggctttctgaatgtgtcctagccattgac
catctttataacatactcatattaatatatttttgatttttaaacaactc
aaaggctgagaaatatacatcatggtgcgcaaccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30720552_30721506
seq2: B6Ng01-205P20.b_39_1001

seq1  GAATTCCAGGACAGCTAGAGCTACACAGAGAAACCCTGTCTCGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCTAGAGCTACACAGAGAAACCCTGTCTCGAAAGAAA  50

seq1  ACAAAACAAAACAAACAAACAAAAAACAAAAACAAAAACAAAAGAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAAACAAACAAAAAACAAAAACAAAAACAAAAGAAAAAA  100

seq1  GATAGCTCAGTTCTACTGAAGAACACTAGAGAGTGCCAGAAAGTTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCAGTTCTACTGAAGAACACTAGAGAGTGCCAGAAAGTTTTAAG  150

seq1  TCCTCAGAAGTATGTCCACAAAAGCAAATGCCAGTTGCTGTGCAGAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAGTATGTCCACAAAAGCAAATGCCAGTTGCTGTGCAGAATGG  200

seq1  ATCAATGCCAGAAACAATTATAAAACCCTAAAATTTGAATATTAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCCAGAAACAATTATAAAACCCTAAAATTTGAATATTAAGTAAA  250

seq1  AAAAGAGAAAGAGTGGTGGATTGTAAAATTTTTGTAAGGTGTAGGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAGAGTGGTGGATTGTAAAATTTTTGTAAGGTGTAGGAGAGC  300

seq1  CATAACTGTTTGCTTGAATATGTTGCAGGTACACAAAGATGTCTGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGTTTGCTTGAATATGTTGCAGGTACACAAAGATGTCTGTCATT  350

seq1  CATTCATGTTTATATTAGAAGAGAAAGAAAACCTTGATTAGCAAGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTTTATATTAGAAGAGAAAGAAAACCTTGATTAGCAAGAGATT  400

seq1  AAGCTCTAGCTTCATTAAACTTTCATTTCTGTAGACAACACAAGTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTAGCTTCATTAAACTTTCATTTCTGTAGACAACACAAGTTTCCA  450

seq1  TCAGGACATGAAGTATGCAGCTATGGGCTGTGGAGATATATACAGAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACATGAAGTATGCAGCTATGGGCTGTGGAGATATATACAGAATTG  500

seq1  TATTGAACATAATTTTGGAGCTTTAGCAATAGATGAGAATATTCAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAACATAATTTTGGAGCTTTAGCAATAGATGAGAATATTCAGAAAG  550

seq1  ACTGAGAGAAGATCAGTGCATTAATTAGGGTACCAATAAATGACTACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGAAGATCAGTGCATTAATTAGGGTACCAATAAATGACTACATC  600

seq1  AAACACCTGGGCTATAAAGACAGTGTTCAGTTGTTGTTGGTTTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTGGGCTATAAAGACAGTGTTCAGTTGTTGTTGGTTTTTTGTTT  650

seq1  TGTTTTGTTTTCATATACCCATCTCAGTATGTTGAGACTAATGTGGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTCATATACCCATCTCAGTATGTTGAGACTAATGTGGTACA  700

seq1  CATATCCTCAGGCT-CCTAAGGATGCTGGCATGTGAGAGAGATGATTTCC  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATATCCTCAGGCTCCCTAAGGATGCTGGCATGTGAGAGAGATGATTTCC  750

seq1  CATTGGTGTTATGATTAGTATAGAAGAA-TGTGTAGGCCTACCTCTAGGA  798
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTGGTGTTATGATTAGTATAGAAGAATTGTGTAGGCCTACCTCTAGGA  800

seq1  GACTTCAGTCATTTTTATTAACTGTAAATCAATAGAAGAAAAGGGAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTCATTTTTATTAACTGTAAATCAATAGAAGAAAAGGGAGAAA  850

seq1  GACTAGATCTAGAGACAAGCATTACAT-CACA-GGTTTGTAGTACAATGT  896
      |||||||||||||||| |||||||| | |||| |||||||||||||||| 
seq2  GACTAGATCTAGAGAC-AGCATTACTTCCACAGGGTTTGTAGTACAATGC  899

seq1  AAAATAA-CTTCCATTTTCAAAGGAG-AAATCAA-GGCCATCTGCAA-TC  942
      |||| || |||||||||||||||||| ||||||| || ||||||||| ||
seq2  AAAAAAACCTTCCATTTTCAAAGGAGAAAATCAAGGGTCATCTGCAATTC  949

seq1  TATAGA-GGTTTTA  955
      |||||| |||||||
seq2  TATAGAGGGTTTTA  963


seq1: chr4_30858246_30859389
seq2: B6Ng01-205P20.g_67_1203 (reverse)

seq1  AATGGTTTGCCAAACCATGAT-TGTATTTCTAAACCCTTGAGTTGTTTAA  49
      |||||||   |  |||||||| | ||||||| | || |||||||||||||
seq2  AATGGTT--GCGCACCATGATGTATATTTCTCAGCCTTTGAGTTGTTTAA  48

seq1  AAACTCAAAAATA-ATTATATA-GAGTATGTTATTAAAGTTGGTTCAATG  97
      ||| ||||||||| |||| ||| |||||||||| ||||| ||| ||||||
seq2  AAA-TCAAAAATATATTA-ATATGAGTATGTTA-TAAAGATGG-TCAATG  94

seq1  GCTAGGACACAATTCAGAAAGGCCTTGCTGAATAAGCATTGTTGTAACAT  147
      |||||||||| ||||||||| |||||||||||||||||||||||||||| 
seq2  GCTAGGACAC-ATTCAGAAA-GCCTTGCTGAATAAGCATTGTTGTAACA-  141

seq1  TTGAAGTCTGATTCTTCAGCATACACATAAGAAGCCAGATGGTCGGACAT  197
      |||||||||||||| |||||||||||||||| ||||||   |||||||||
seq2  TTGAAGTCTGATTC-TCAGCATACACATAAG-AGCCAGGATGTCGGACAT  189

seq1  GCCTCTGACCCCAGCTCTAAGAACAGGAAAC-AAGAGGTTCTGTTGACCT  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCTCTGACCCCAGCTCTAAGAACAGGAAACAAAGAGGTTCTGTTGACCT  239

seq1  CATGGCTTCCTAGTCCTGAAGAAGTGGAAAGCTCCTGGTTCAAAGAGACT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTCCTAGTCCTGAAGAAGTGGAAAGCTCCTGGTTCAAAGAGACT  289

seq1  CTGCCTCAAAAATAGGGTGGAGAAAACTGAGAAGGAATTCAACTGAGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAAAAATAGGGTGGAGAAAACTGAGAAGGAATTCAACTGAGAAG  339

seq1  TTGAAAACTGAGAAGTGTCAAACTCTTGCCTGCACATGTGTACATACACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTGAGAAGTGTCAAACTCTTGCCTGCACATGTGTACATACACA  389

seq1  TACATAGACATTTTACATGCTTACATCTGGGTCTCCAAATGAAACTTATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGACATTTTACATGCTTACATCTGGGTCTCCAAATGAAACTTATC  439

seq1  TTAAGTTCATTTTGTCTGTAACAGAGTAATTTGACATGAGTTTTGTACTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTCATTTTGTCTGTAACAGAGTAATTTGACATGAGTTTTGTACTG  489

seq1  AAACTCAGAATATCCTGTTAATGGAAAAAGAGTCAATATACCAAGGTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAATATCCTGTTAATGGAAAAAGAGTCAATATACCAAGGTCAT  539

seq1  AGGTTTAATATATTAATTCACAGAAATTCTGAAGATTTAGGTCAGTTATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAATATATTAATTCACAGAAATTCTGAAGATTTAGGTCAGTTATA  589

seq1  ACCTGAAAATTAATCAAAACAAAGAATTTAAAACAATAACAATTTATATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAATTAATCAAAACAAAGAATTTAAAACAATAACAATTTATATT  639

seq1  CAAATAAAAGAGTGCATGAGCCCACATTTGAGAACCTTAATTCATACATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAGAGTGCATGAGCCCACATTTGAGAACCTTAATTCATACATA  689

seq1  GATGACAGAATCCTAGCATGTTTTATATATATATATATATATATATGAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGAATCCTAGCATGTTTTATATATATATATATATATATATGAAT  739

seq1  GAAGCTAAAATAAGAAAGTTTAGGAAATCTCTGATACCAAAAAAAGAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAAATAAGAAAGTTTAGGAAATCTCTGATACCAAAAAAAGAGAA  789

seq1  GTTTTGCAATATTTCGTGGAGCAAGTATAAATTCATCTCACTCAGGGCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAATATTTCGTGGAGCAAGTATAAATTCATCTCACTCAGGGCAT  839

seq1  ATATTATATAATGCAATGTCTTTGTATGTAAGTTACATTATTGTTTCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATAATGCAATGTCTTTGTATGTAAGTTACATTATTGTTTCATT  889

seq1  TTGTTTTTTCATCCCTGCTAGAGTAAAAATAATAAAAGCACAGCAAACAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTCATCCCTGCTAGAGTAAAAATAATAAAAGCACAGCAAACAC  939

seq1  GCAAAATCAAAACAAAACAAAGCATGAAACTCAAAGGAATATATTCAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCAAAACAAAACAAAGCATGAAACTCAAAGGAATATATTCAAAG  989

seq1  CTTTTTATGTCCCAATTTTCTGAGAAGTAAATCTAAAAATTCAAGCATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGTCCCAATTTTCTGAGAAGTAAATCTAAAAATTCAAGCATGA  1039

seq1  CACAATGGGACATACTTGATTTCTATACACATCTAATATGTGAATGTGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGGACATACTTGATTTCTATACACATCTAATATGTGAATGTGAG  1089

seq1  TTGTGTCATGCAAATGGATTTCCAGCTTGCCTCAAGAACTGTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCATGCAAATGGATTTCCAGCTTGCCTCAAGAACTGTGAATTC  1137


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