BAC Information

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BAC

Clone NameB6Ng01-205P21
Chromosome4 (Build37)
Map Location 47,966,550 - 48,092,455
singlet/doubletdoublet
Overlap geneLOC100040788, Nr4a3
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneStx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205P21.bB6Ng01-205P21.g
ACCGA025526GA025527
length1,0881,039
definitionB6Ng01-205P21.b B6Ng01-205P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,966,550 - 47,967,327)(48,091,685 - 48,092,455)
sequence
gaattccgggcagccggagctatacagataaatcctgtatcaaaaaacaa
acaaacaaacaaaaaaaaactctaccaggaaatatataaatgattagtat
aacaaactcatcaaaacttctagaatatacaaagaacttaaaaaaaaaat
ggagaaaagagaaaagaacccagtggttaattgggaataattgggatagg
gatctgaagagggttttctcctaagaaatggaaatggctgagaaatgatt
ttatatatatatacatatatatatatatatatatatatatatatatatat
atatatatatatatatatatgaaatgaaatgcattttttcctttacaaaa
atctagcactttaggaacaacaaattcttggagaaaaaaaattctaatga
gatcattagagttgaaaaaaacatatctcctaggccagagtatgcatagc
aactaaaaaggcctcaatgggctcttcctccttctgccctgatgctctac
ctgagcacaacagtttctctacaagagaagctgtcctcagaagggaagga
gagttaagtgtgagtttcacagtaagtgaagcatgaagacaaacacaatt
taacaagccaatgccctcaatttagaaggaacttgttatccttttttttt
ctttttctttttcttttccttttacttttccttttcctttttcttttttc
tttttttctttttcttttctctctctctctctctctctctccctctctct
ctctctttctttctttctttcttttttaaacaaaaaggcaaggtcttact
acatatccctggctgagctggaattccctatgtagaacaggctggccttg
aactcatagagatccagctatctctgcatccccagtgaggagattaaaag
tgtggaccaccaaacccagcctttcacatcattttttaaaggatagattt
ttagtgacacaatgtaaacagcctcagcatcctatttggaaacagggaac
ggggttatttataccaaaggacaatttctaacctggattctcaaagaggt
tcagaagaataaatactatataattactaacgtgtagc
gaattctcttgtgtgccagcttctgttgtcaaactttgtgccttacttta
aagctattggttaataaagatgccaacagctcatatctgggagagatatg
tggaattttggttcctggacttgaggtctgaggcagataccatgagggag
aggagaagaggaaggaaaaagacaccatggggtcatgagagtcagcctgt
tggaatagaatcatggtggaagatggaattattgatagggaagtagataa
ttaggatggggggagccccttgcagattagcaaacagctacagagctgaa
gtgtggagtccataatacagagggagagagggagtcagatattttctcat
ttcacagagatttatacatggaggattaacatttctctgggcaggagggg
tgtagcttagtggtggagtgctcgcttagcacacacgccctgggttgaat
cctcgtcagcaacagcaaccaaaaaaattgttgtcaccccctccaatgat
ttaaccaaacgagctttatacactgggtttatacaatcctgcatttcagg
gttatgtttccaagatgtcaagacagaactcttagagtcgtggctaagta
ctagacatacatcaaaaacactgtgcatgtacatgagaagagattttatc
tgctttgtttaaactcccacctaagagaagaatctgcacttacggcatta
caaaccccagaatcaggttccacctaccctggcaggtcagacattttaac
ctgcgaatagaattcctttaatagcctttaggttatactcttttactaag
attattttagctcagaattgaggcaaggcaaatgttttctctaatttata
tgttagaagactcagagttaagtgacttgcctagggcttgaggtagcaag
cggctaggttctttccaaaccgtattctgagaatttctcttcaccacagc
tgactacctgccttcactgcttctactggtagaaagtttctccttattcc
tgagattaactggaccttccttcagcaaccttctatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_47966550_47967327
seq2: B6Ng01-205P21.b_351_1130

seq1  ATATATATATAGGAAATGAAATGCATTTTTTCCTTTACAAAAATCTAGCA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGAAATGAAATGCATTTTTTCCTTTACAAAAATCTAGCA  50

seq1  CTTTAGGAACAACAAATTCTTGGAGAAAAAAAATTCTAATGAGATCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAACAACAAATTCTTGGAGAAAAAAAATTCTAATGAGATCATTA  100

seq1  GAGTTGAAAAAAACATATCTCCTAGGCCAGAGTATGCATAGCAACTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAAAAAACATATCTCCTAGGCCAGAGTATGCATAGCAACTAAAA  150

seq1  AGGCCTCAATGGGCTCTTCCTCCTTCTGCCCTGATGCTCTACCTGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCAATGGGCTCTTCCTCCTTCTGCCCTGATGCTCTACCTGAGCAC  200

seq1  AACAGTTTCTCTACAAGAGAAGCTGTCCTCAGAAGGGAAGGAGAGTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTCTCTACAAGAGAAGCTGTCCTCAGAAGGGAAGGAGAGTTAAG  250

seq1  TGTGAGTTTCACAGTAAGTGAAGCATGAAGACAAACACAATTTAACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTCACAGTAAGTGAAGCATGAAGACAAACACAATTTAACAAGC  300

seq1  CAATGCCCTCAATTTAGAAGGAACTTGTTATCCTTTTTTTTTCTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTCAATTTAGAAGGAACTTGTTATCCTTTTTTTTTCTTTTTCT  350

seq1  TTTTCTTTTCCTTTTACTTTTCCTTTTCCTTTTTCTTTTTTC-TTTTTTC  399
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTCTTTTCCTTTTACTTTTCCTTTTCCTTTTTCTTTTTTCTTTTTTTC  400

seq1  TTTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTT  450

seq1  CTTTCTTTCTTTCTTTTTTTAAACAAAAAGGCAAGGTCTTACTACATATC  499
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTC-TTTTTTAAACAAAAAGGCAAGGTCTTACTACATATC  499

seq1  CCTGGCTGAGCTGGAATTCCCTATGTAGAACAGGCTGGCCTTGAACTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGAGCTGGAATTCCCTATGTAGAACAGGCTGGCCTTGAACTCAT  549

seq1  AGAGATCCAGCTATCTCTGCATCCCCAGTGAGGAGATTAAAAGTGTGGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCAGCTATCTCTGCATCCCCAGTGAGGAGATTAAAAGTGTGGAC  599

seq1  CACCAAACCCAGCC-TTCACATCATTTTTTAAAGGATAGATTTTTAGGTG  648
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CACCAAACCCAGCCTTTCACATCATTTTTTAAAGGATAGATTTTTA-GTG  648

seq1  ACACAATGTAAAACAGCCACAGCAATCCTATTTGGAAACAGGGAAAGGGG  698
      ||||||||| |||||||| |||| ||||||||||||||||||| || |||
seq2  ACACAATGT-AAACAGCCTCAGC-ATCCTATTTGGAAACAGGG-AACGGG  695

seq1  GTTATTTATACCAAAGGACAATTTCTACACT-GATTCTCAAAGAGGTTCA  747
      |||||||||||||||||||||||||||  || ||||||||||||||||||
seq2  GTTATTTATACCAAAGGACAATTTCTAACCTGGATTCTCAAAGAGGTTCA  745

seq1  G-AGA--TAATACTATATAA-TACTAACGTGTAGC  778
      | |||   |||||||||||| ||||||||||||||
seq2  GAAGAATAAATACTATATAATTACTAACGTGTAGC  780

seq1: chr4_48091685_48092455
seq2: B6Ng01-205P21.g_329_1102 (reverse)

seq1  AAAATAGGAGGTTGCTGAAGGAAGG-CCAGTTTATCTCAGG-ATAAGGAG  48
      ||||||| ||||||||||||||||| |||||| |||||||| ||||||||
seq2  AAAATAGAAGGTTGCTGAAGGAAGGTCCAGTTAATCTCAGGAATAAGGAG  50

seq1  AAACTTTCTAACAGTTAGAGGCAGTTGAAGGCAGGTAGTCAGCTGGTGGT  98
      |||||||||| ||| |||| |||| ||||||||||||||||||| |||||
seq2  AAACTTTCTACCAG-TAGAAGCAG-TGAAGGCAGGTAGTCAGCT-GTGGT  97

seq1  G-AGAGAAATTCTCAG-ATTCGGTTT-GAAAGAAACTGGCCGCTTGCTAA  145
      | |||||||||||||| || |||||| ||||||| || |||||||||| |
seq2  GAAGAGAAATTCTCAGAATACGGTTTGGAAAGAACCTAGCCGCTTGCT-A  146

seq1  CCTC-AGCCCTAGGCAAGTCACTTAACTCTGAGTCTTCTTACATATTAAT  194
      |||| |||||||||||||||||||||||||||||||||| |||||| |||
seq2  CCTCAAGCCCTAGGCAAGTCACTTAACTCTGAGTCTTCTAACATATAAAT  196

seq1  TAGAGAAAACATTTGCCTTGCCTC-ATTCTGAGCTAAAATAATCTTAGTA  243
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAGAGAAAACATTTGCCTTGCCTCAATTCTGAGCTAAAATAATCTTAGTA  246

seq1  AAAGAGTATAACCTAAAGGCTATTAAAGGAATTCTATTCGCAGGTTAAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTATAACCTAAAGGCTATTAAAGGAATTCTATTCGCAGGTTAAAA  296

seq1  TGTCTGACCTGCCAGGGTAGGTGGAACCTGATTCTGGGGTTTGTAATGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGACCTGCCAGGGTAGGTGGAACCTGATTCTGGGGTTTGTAATGCC  346

seq1  GTAAGTGCAGATTCTTCTCTTAGGTGGGAGTTTAAACAAAGCAGATAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGCAGATTCTTCTCTTAGGTGGGAGTTTAAACAAAGCAGATAAAA  396

seq1  TCTCTTCTCATGTACATGCACAGTGTTTTTGATGTATGTCTAGTACTTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCATGTACATGCACAGTGTTTTTGATGTATGTCTAGTACTTAG  446

seq1  CCACGACTCTAAGAGTTCTGTCTTGACATCTTGGAAACATAACCCTGAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGACTCTAAGAGTTCTGTCTTGACATCTTGGAAACATAACCCTGAAA  496

seq1  TGCAGGATTGTATAAACCCAGTGTATAAAGCTCGTTTGGTTAAATCATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGATTGTATAAACCCAGTGTATAAAGCTCGTTTGGTTAAATCATTG  546

seq1  GAGGGGGTGACAACAATTTTTTTGGTTGCTGTTGCTGACGAGGATTCAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTGACAACAATTTTTTTGGTTGCTGTTGCTGACGAGGATTCAAC  596

seq1  CCAGGGCGTGTGTGCTAAGCGAGCACTCCACCACTAAGCTACACCCCTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCGTGTGTGCTAAGCGAGCACTCCACCACTAAGCTACACCCCTCC  646

seq1  TGCCCAGAGAAATGTTAATCCTCCATGTATAAATCTCTGTGAAATGAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAGAAATGTTAATCCTCCATGTATAAATCTCTGTGAAATGAGAA  696

seq1  AATATCTGACTCCCTCTCTCCCTCTGTATTATGGACTCCACACTTCAGCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGACTCCCTCTCTCCCTCTGTATTATGGACTCCACACTTCAGCT  746

seq1  CTGTAGCTGTTTGCTAATCTGCAAGGGG  771
      ||||||||||||||||||||||||||||
seq2  CTGTAGCTGTTTGCTAATCTGCAAGGGG  774