BAC Information

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BAC

Clone NameB6Ng01-208A15
Chromosome4 (Build37)
Map Location 112,545,649 - 112,686,499
singlet/doubletdoublet
Overlap geneLOC433745, LOC545668
Upstream geneSlc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
Downstream geneLOC230622, LOC100040607, LOC242627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208A15.bB6Ng01-208A15.g
ACCGA027027GA027028
length1,2411,114
definitionB6Ng01-208A15.b B6Ng01-208A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,545,649 - 112,546,326)(112,685,376 - 112,686,499)
sequence
gaattctttccaagagtaatttacttgtagctatgggggaaagaccaaaa
cacaattagttatttttatatcattgaatttgttaggacagagtaagatg
cttatcttttcccaagtctagatcagcactgcctgatctagacttattta
atttcattgaggcatttctggctgacaagaggcaaattgcatttactttt
cactgtgtggatgtcaggtaggtccccagttcattttgtgatggaaggaa
aagttctcttgtacctctgttgcatatatactcattgctccaatagtaac
ccttccctcatcaaatgaacacatcctcaagatcactctggaaaagaggc
tttcttcctgatgtaggtcctaggaaaatcattgcccttagacttgactt
gttcacaattgaactccaaatgacacaatttaacacaataaaaataccag
atatgttaagtccagagttctactgaagcttcttcacaatatctttgttt
atgacactgtttcctgcatctgaatcactaagcattcatatattggcaat
ctctaggtattggatgacctagcaaattagcatgatacatatcaatatca
atatcaaattttctccctctccactttctataggtggtgcctaggccttt
aattgtctaagaacttgtttgtcatagatattcacatttttaaccaccaa
ggtccctatgaaaatctgctctgcatctggtactcatatatataggctta
ccagtgaaaccaatataaggttgcaatcagtgaaggcttctacagagctt
gtataatcattgtaaacaaggtaggaattttctttgctccagaaactttt
ccctgagaacttaaagctgcaaagcaacattggtctttctttttcaacat
ggatgaattgtgtctgaatttggatatcagagtattgcccttgacctctc
atctgctctctgagtatcttcattccacttgttctgccctacggatctat
attcctgcctcatacatagaatttgaatattttagtggaaaaagtcacct
acatatcatccttaatattcacctttcggtgaaatcttattgcacccctt
tgtctaatttgtcctccttataatatcccatcttttattgcataaaggtt
tttatggaactccaccttaaataacatgtaatacattcagaatctgtcaa
gacattccaagctctaggattcactcaataccatgtgggct

gaattccaaaaaataaaaaaaagaaagaaataaaaagggttaagtttaat
atgttgggaagaagtctcaaattgaaggtcttatatctatgatatgctca
taaatttattgagactagatatgtcccaacattggtgtatacaggttagt
attcccatgagatatgaaatgtaccacgatgatgaaatgtagggggagaa
atgatggaggcttcaggggaagatattgatatatatcctcaaaaacaacc
caaggcttttcctattctacaaacacaggacattatcataacagagatac
caaatttaaaggaggatcagtggcttaaatgccaagagtgctaccacatt
aatggtattgtctacagaatcttccatttatgttcacaataaaatatttc
actcaggtacaaagcatgcaattatcatttttaggccatggggtgaaatc
aacatgaaaataatgttttaacttatattctgcagaacaacagatataat
gaaatttctcttcttggattgaagacaacatagatacaagtaccatgtta
tatatgtgtgatgataatatacaaaccaagattgtctaggagttaaagac
aacccaatagacagggataaatgattttttttttttggtgagggtcaaga
attgcaatttattgtgatatgtcttcaagaaaatatcttaaataaattca
tccccacatgtgatgtatatgggccacaaaaatagagaccataaactcat
atacattcattccaaatttctctctgacaagagcttatccacttaatcta
gatgtcttcaatggatgcagtatggccatcataaaagcagtaaggaatga
atgtttctgtatgccattatttatattttgtccctattcagtatatggta
ttttgcctacagagacaaaggagtggctgttgaaaattattcaatcaagt
attcaaagttccagtgtgatataggtatgaacgattagatttcaaataga
attaaaacccatgggtttgtgaaaatatgtgtaaataaaatttatgtatt
atggattttcatgatgcactgtattcctagctgctatgaaattctgctac
aggtgacacaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_112545649_112546326
seq2: B6Ng01-208A15.b_596_1285

seq1  TCTAGGTATTGGATGACCTAGCAAATTAGCATGATACATATCAATATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTATTGGATGACCTAGCAAATTAGCATGATACATATCAATATCAA  50

seq1  TATCAAATTTTCTCCCTCTCCACTTTCTATAGGTGGTGCCTAGGCCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTTTCTCCCTCTCCACTTTCTATAGGTGGTGCCTAGGCCTTTA  100

seq1  ATTGTCTAAGAACTTGTTTGTCATAGATATTCACATTTTTAACCACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAAGAACTTGTTTGTCATAGATATTCACATTTTTAACCACCAAG  150

seq1  GTCCCTATGAAAATCTGCTCTGCATCTGGTACTCATATATATAGGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTATGAAAATCTGCTCTGCATCTGGTACTCATATATATAGGCTTAC  200

seq1  CAGTGAAACCAATATAAGGTTGCAATCAGTGAAGGCTTCTACAGAGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACCAATATAAGGTTGCAATCAGTGAAGGCTTCTACAGAGCTTG  250

seq1  TATAATCATTGTAAACAAGGTAGGAATTTTCTTTGCTCCAGAAACTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCATTGTAAACAAGGTAGGAATTTTCTTTGCTCCAGAAACTTTTC  300

seq1  CCTGAGAACTTAAAGCTGCAAAGCAACATTGGTCTTTCTTTTTCAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACTTAAAGCTGCAAAGCAACATTGGTCTTTCTTTTTCAACATG  350

seq1  GATGAATTGTGTCTGAATTTGGATATCAGAGTATTGCCCTTGACCTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTGTGTCTGAATTTGGATATCAGAGTATTGCCCTTGACCTCTCA  400

seq1  TCTGCTCTCTGAGTATCTTCATTCCACTTGTTCTGCCCTACGGATCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTCTGAGTATCTTCATTCCACTTGTTCTGCCCTACGGATCTATA  450

seq1  TTCCTGCCTCATACATAGAATTTG-ATATTTTAGT-GAAAAAGTCA-CTA  497
      |||||||||||||||||||||||| |||||||||| |||||||||| |||
seq2  TTCCTGCCTCATACATAGAATTTGAATATTTTAGTGGAAAAAGTCACCTA  500

seq1  CATATCATCCTTAATATTCACC-TTCGGTG-AATC-TATTGCACCCCTTT  544
      |||||||||||||||||||||| ||||||| |||| ||||||||||||||
seq2  CATATCATCCTTAATATTCACCTTTCGGTGAAATCTTATTGCACCCCTTT  550

seq1  GTCTATTTTGTCTTC--TAT-ATATCCCATC-TTTATTGCATAAA-GTTT  589
      ||||| |||||| ||  ||| |||||||||| ||||||||||||| ||||
seq2  GTCTAATTTGTCCTCCTTATAATATCCCATCTTTTATTGCATAAAGGTTT  600

seq1  TTAT-GAACTCAACC-TAAATAACAATGTAAATCATTCAG-ATCTGTCAA  636
      |||| |||||| ||| |||||||| ||||||  ||||||| ||||||| |
seq2  TTATGGAACTCCACCTTAAATAAC-ATGTAATACATTCAGAATCTGTC-A  648

seq1  AGACATTTCCAGCTCTTAAGGA-TCACATCATACCATG-GGGCT  678
      ||||||| | ||||||  |||| ||||   |||||||| |||||
seq2  AGACATTCCAAGCTCT--AGGATTCACTCAATACCATGTGGGCT  690


seq1: chr4_112685376_112686499
seq2: B6Ng01-208A15.g_63_1176 (reverse)

seq1  CTCTTGTTGGTTCACCTGTAGCAGAATTTCATAGCAGCTAGGGATACAGT  50
      |||||||    ||||||||||||||||||||||||||||||| |||||||
seq2  CTCTTGT---GTCACCTGTAGCAGAATTTCATAGCAGCTAGGAATACAGT  47

seq1  GGCATCATGAAAATCCCAATAATACCATTAAATTTTATTTACACATATTT  100
       |||||||||||||||  |||||||   ||||||||||||||||||||||
seq2  -GCATCATGAAAATCC--ATAATAC--ATAAATTTTATTTACACATATTT  92

seq1  TCACAAA-CCATGGGTTTTAATTCTATTTTGAAATCTTAATCGTTCATAC  149
      ||||||| |||||||||||||||||| ||||||||| |||||||||||||
seq2  TCACAAACCCATGGGTTTTAATTCTA-TTTGAAATC-TAATCGTTCATAC  140

seq1  CTATATCCACACTGGAACTTTGAATACTTGATTGAATAATTTTCAACAGC  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAT-CACACTGGAACTTTGAATACTTGATTGAATAATTTTCAACAGC  189

seq1  CACTCCTTTGTCTCTGTAGGCAAAATACCATATACTGAATAGGGACAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTTGTCTCTGTAGGCAAAATACCATATACTGAATAGGGACAAAA  239

seq1  TATAAATAATGGCATACAGAAACATTCATTCCTTACTGCTTTTATGATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAATGGCATACAGAAACATTCATTCCTTACTGCTTTTATGATGG  289

seq1  CCATACTGCATCCATTGAAGACATCTAGATTAAGTGGATAAGCTCTTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGCATCCATTGAAGACATCTAGATTAAGTGGATAAGCTCTTGTC  339

seq1  AGAGAGAAATTTGGAATGAATGTATATGAGTTTATGGTCTCTATTTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAATTTGGAATGAATGTATATGAGTTTATGGTCTCTATTTTTGT  389

seq1  GGCCCATATACATCACATGTGGGGATGAATTTATTTAAGATATTTTCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATATACATCACATGTGGGGATGAATTTATTTAAGATATTTTCTTG  439

seq1  AAGACATATCACAATAAATTGCAATTCTTGACCCTCACCAAAAAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATATCACAATAAATTGCAATTCTTGACCCTCACCAAAAAAAAAAA  489

seq1  ATCATTTATCCCTGTCTATTGGGTTGTCTTTAACTCCTAGACAATCTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATCCCTGTCTATTGGGTTGTCTTTAACTCCTAGACAATCTTGG  539

seq1  TTTGTATATTATCATCACACATATATAACATGGTACTTGTATCTATGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATTATCATCACACATATATAACATGGTACTTGTATCTATGTTG  589

seq1  TCTTCAATCCAAGAAGAGAAATTTCATTATATCTGTTGTTCTGCAGAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATCCAAGAAGAGAAATTTCATTATATCTGTTGTTCTGCAGAATA  639

seq1  TAAGTTAAAACATTATTTTCATGTTGATTTCACCCCATGGCCTAAAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAAACATTATTTTCATGTTGATTTCACCCCATGGCCTAAAAATG  689

seq1  ATAATTGCATGCTTTGTACCTGAGTGAAATATTTTATTGTGAACATAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCATGCTTTGTACCTGAGTGAAATATTTTATTGTGAACATAAAT  739

seq1  GGAAGATTCTGTAGACAATACCATTAATGTGGTAGCACTCTTGGCATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTCTGTAGACAATACCATTAATGTGGTAGCACTCTTGGCATTTA  789

seq1  AGCCACTGATCCTCCTTTAAATTTGGTATCTCTGTTATGATAATGTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGATCCTCCTTTAAATTTGGTATCTCTGTTATGATAATGTCCTG  839

seq1  TGTTTGTAGAATAGGAAAAGCCTTGGGTTGTTTTTGAGGATATATATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGAATAGGAAAAGCCTTGGGTTGTTTTTGAGGATATATATCAA  889

seq1  TATCTTCCCCTGAAGCCTCCATCATTTCTCCCCCTACATTTCATCATCGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCCCTGAAGCCTCCATCATTTCTCCCCCTACATTTCATCATCGT  939

seq1  GGTACATTTCATATCTCATGGGAATACTAACCTGTATACACCAATGTTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATTTCATATCTCATGGGAATACTAACCTGTATACACCAATGTTGG  989

seq1  GACATATCTAGTCTCAATAAATTTATGAGCATATCATAGATATAAGACCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCTAGTCTCAATAAATTTATGAGCATATCATAGATATAAGACCT  1039

seq1  TCAATTTGAGACTTCTTCCCAACATATTAAACTTAACCCTTTTTATTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGAGACTTCTTCCCAACATATTAAACTTAACCCTTTTTATTTCT  1089

seq1  TTCTTTTTTTTATTTTTTGGAATTC  1124
      |||||||||||||||||||||||||
seq2  TTCTTTTTTTTATTTTTTGGAATTC  1114


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