BAC Information

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BAC

Clone NameB6Ng01-208L13
Chromosome4 (Build37)
Map Location 104,218,428 - 104,388,591
singlet/doubletdoublet
Overlap geneDab1
Upstream geneLOC100039940, EG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208L13.bB6Ng01-208L13.g
ACCGA027524GA027525
length1,1631,066
definitionB6Ng01-208L13.b B6Ng01-208L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,218,428 - 104,219,592)(104,387,542 - 104,388,591)
sequence
gaattctgtcactgaaaagaaacaaaacgaaaagcacccaggtgtaaaat
tccaggtcttgttcattctcatcgataccacacaggaatggcaagactga
aattaggaaatcagaatgatgaagattgatgtttctctactttaatgggc
tggtagtaaaatacattgtctttatttcctatactcataggcatgtgtag
acaaagagcaagcagagaaagttgttggtttggccccatcctttaatatt
aatatcttcttggcaattagccctatagtgcccacagtgataatcaggtt
tgctctctctttccctcctttagtccctcccttttgaaaccaaattagtt
tgattgaatccatctgactttttacatcaaatttattaacatgctcattg
atttgaaaagaacttctatccccatgtgtttttaggtatattttcttaaa
gtgttccctcaaatatccataattttttttttaagagggcaaggtgacaa
ctgaggcttttgctgttaccagtgagtctcggatgggtgtgtaggagaca
tggaactcttagaatatttgctaagaaatctctgtgtcccatcaggtagg
atgtgcaagatcctgcagaccccaactgcagggcaaaggctgaggttttt
tgttttgttttgttttgttttgttttgtttttcattgatttttggtttta
ttgttgttcaaaacaatgattatttatttaaattatttatttaaatggct
gtcctattttatggtctatcaagtatgttttggttacattgtaacatcat
aatactattagtctcagaaatattaatgtaaattttataactttaaacca
gccagcaatgatgacttataagccagcacatcacttattaataccaatgc
cagtgctaatgagtttccatggattgagttttaagcagtatttcagacac
acacacacacacacacacacgcacttctttccatttcttctttaataata
atcccaaaagttaaacattattatctccagtttattaatgagaaactaag
cttaaaaggaacaatttcgtttggacaagtcatggaagtttgcagaaagc
taggctgaattcaatcaggtctcttaagtcgtctggtcaagcacatcctc
taattcctataaa

gaattcaatggaagctaactgggcttcctggagtccggatctccatgctt
ataaaatggctcaggactattttcagcgttgggaaaatattaaaatgaag
ttaataattaagtcacacaatttacatctcaaatgtgttggactcatggc
agacttttactaacatcgtaaagataatttattggctaattttctcctta
agcacaacttttaaaataacctcctttcttgagatatagcccttcctctt
gccaaatgattttcactcaaggattaaacgagaaaaacatggggaggcat
aaaccataggctgttatttcgtttcattggatttgctgtttaaatagaac
cctgagttaattaaattttatagaaaaagggggttcttgggccataaaat
taaaaataacctgaataaccacatatgatggagaatcaggaatagtatct
attttcaccgccctcccccacgtgaaccccagccgattatttgtcaccta
ataaaccatgttccatctgaaaatatctggaaatactgtcctcatccatc
atgttaaaggcctcaagagaataaagctaagagttcacatttgtaaaaca
ctttacagcttacaataagcattcccatacattatcatcatgtttgacac
tgcctgagcctaggaaagtcggctccatggtcagtcggcactttacagac
tccttaactgaggctgaggtaagtgacggggacgaggggattggatgcat
ggacctgccaagtagccacaccctttcaaagtctgtctgctgattcaccg
gtccctgctcggcttttattaatggtggtagtgagctctatgacatgttg
caactagaaagccgtgggtcccaagagacctgcttaggtgcacaaccctg
ggggaggctatttacagctataactagagatgcctgctcatgctagagga
ttgcctgccaacactagccattccaaagggctttctggtaagagatgtag
cttctaaggtgagcagaatgttttcttttagaaggcttacctgggtactt
tgccagcagaaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_104218428_104219592
seq2: B6Ng01-208L13.b_46_1208

seq1  GAATTCTGTCACTGAAAAGAAACAAAACGAAAAGCACCCAGGTGTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACTGAAAAGAAACAAAACGAAAAGCACCCAGGTGTAAAAT  50

seq1  TCCAGGTCTTGTTCATTCTCATCGATACCACACAGGAATGGCAAGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCTTGTTCATTCTCATCGATACCACACAGGAATGGCAAGACTGA  100

seq1  AATTAGGAAATCAGAATGATGAAGATTGATGTTTCTCTACTTTAATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAATCAGAATGATGAAGATTGATGTTTCTCTACTTTAATGGGC  150

seq1  TGGTAGTAAAATACATTGTCTTTATTTCCTATACTCATAGGCATGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAAAATACATTGTCTTTATTTCCTATACTCATAGGCATGTGTAG  200

seq1  ACAAAGAGCAAGCAGAGAAAGTTGTTGGTTTGGCCCCATCCTTTAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGCAAGCAGAGAAAGTTGTTGGTTTGGCCCCATCCTTTAATATT  250

seq1  AATATCTTCTTGGCAATTAGCCCTATAGTGCCCACAGTGATAATCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCTTGGCAATTAGCCCTATAGTGCCCACAGTGATAATCAGGTT  300

seq1  TGCTCTCTCTTTCCCTCCTTTAGTCCCTCCCTTTTGAAACCAAATTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCTTTCCCTCCTTTAGTCCCTCCCTTTTGAAACCAAATTAGTT  350

seq1  TGATTGAATCCATCTGACTTTTTACATCAAATTTATTAACATGCTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAATCCATCTGACTTTTTACATCAAATTTATTAACATGCTCATTG  400

seq1  ATTTGAAAAGAACTTCTATCCCCATGTGTTTTTAGGTATATTTTCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAGAACTTCTATCCCCATGTGTTTTTAGGTATATTTTCTTAAA  450

seq1  GTGTTCCCTCAAATATCCATAATTTTTTTTTTAAGAGGGCAAGGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTCAAATATCCATAATTTTTTTTTTAAGAGGGCAAGGTGACAA  500

seq1  CTGAGGCTTTTGCTGTTACCAGTGAGTCTCGGATGGGTGTGTAGGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTTTTGCTGTTACCAGTGAGTCTCGGATGGGTGTGTAGGAGACA  550

seq1  TGGAACTCTTAGAATATTTGCTAAGAAATCTCTGTGTCCCATCAGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCTTAGAATATTTGCTAAGAAATCTCTGTGTCCCATCAGGTAGG  600

seq1  ATGTGCAAGATCCTGCAGACCCCAACTGCAGGGCAAAGGCTGAGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAGATCCTGCAGACCCCAACTGCAGGGCAAAGGCTGAGGTTTTT  650

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCATTGATTTTTGGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCATTGATTTTTGGTTTTA  700

seq1  TTGTTGTTCAAAACAATGATTATTTATTTAAATTATTTATTTAAATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTCAAAACAATGATTATTTATTTAAATTATTTATTTAAATGGCT  750

seq1  GTCCTATTTTATGGTCTATCAAGTATGTTTTGGTTACATTGTAACATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATTTTATGGTCTATCAAGTATGTTTTGGTTACATTGTAACATCAT  800

seq1  AATACTATTAGTCTCAGAAATATTAATGTAAATTTTATAACTTTAAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATTAGTCTCAGAAATATTAATGTAAATTTTATAACTTTAAACCA  850

seq1  GCCAGCAATGATGACTTATAAGCCAGCACAACACTTATTAATACCAATGC  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCAGCAATGATGACTTATAAGCCAGCACATCACTTATTAATACCAATGC  900

seq1  CAGTGCTAATGAGTTTCCATGGATTGAGTTTTAAGCAGTATTTCAGACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTGCTAATGAGTTTCCATGGATTGAGTTTTAAGCAGTATTTCAGA-CA  949

seq1  CACACACACACACACACACACACACATCTTTCCATTTCTTCTTT-ATAAT  999
      ||||||||||||||||||||| ||| |||||||||||||||||| |||||
seq2  CACACACACACACACACACACGCACTTCTTTCCATTTCTTCTTTAATAAT  999

seq1  AATCCCAAAAGTTAAACATTATTATCTCAGTTTTATTAATGAGGAAACTA  1049
      ||||||||||||||||||||||||||||   ||||||||||| |||||||
seq2  AATCCCAAAAGTTAAACATTATTATCTCCAGTTTATTAATGA-GAAACTA  1048

seq1  AGGCTTAAAAGG-ACAAATTCGTTTGGCCAAGGTCATGG-AGTTTGCAAG  1097
      | |||||||||| |||| ||||||||| ||| ||||||| ||||||||  
seq2  A-GCTTAAAAGGAACAATTTCGTTTGGACAA-GTCATGGAAGTTTGCAGA  1096

seq1  AAGCTAGGCTGAGATTTCAATCAGGTCTCTTAAGTCTGTCT-GTGCAGCA  1146
      ||||||||||  || ||||||||||||||||||||| |||| ||  ||||
seq2  AAGCTAGGCT--GAATTCAATCAGGTCTCTTAAGTC-GTCTGGTCAAGCA  1143

seq1  CATCTCCTAA-TCCTATAAA  1165
      ||||  |||| |||||||||
seq2  CATCCTCTAATTCCTATAAA  1163


seq1: chr4_104387542_104388591
seq2: B6Ng01-208L13.g_67_1132 (reverse)

seq1  CCACCTTCTGCT-GCAAAGTACCCA-GTA--GCTTCTAAAAG-AAACA-T  44
      |||||||||||| |||||||||||| |||   |||||||||| ||||| |
seq2  CCACCTTCTGCTGGCAAAGTACCCAGGTAAGCCTTCTAAAAGAAAACATT  50

seq1  CTGC-CACC-TAG-AGCTACATCTC-TACCAG-AAGCCCTTTGGAAT-GC  88
      |||| |||| ||| ||||||||||| |||||| |||||||||||||| ||
seq2  CTGCTCACCTTAGAAGCTACATCTCTTACCAGAAAGCCCTTTGGAATGGC  100

seq1  TAGTGTTGGCAGGCAATCCTCTAGCATGAGCAGGCATCTCTAGTTATAGC  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGGCAGGCAATCCTCTAGCATGAGCAGGCATCTCTAGTTATAGC  150

seq1  TGTAAATAGCCT-CCCCAGGG-TGTGCACCT-AGCAGGTCTCTTGGGAAC  185
      |||||||||||| |||||||| ||||||||| |||||||||||||||| |
seq2  TGTAAATAGCCTCCCCCAGGGTTGTGCACCTAAGCAGGTCTCTTGGGACC  200

seq1  CACGGC-TTCTAGTTGCAACATGTCATAGAGCTCACTACCACCATTAATA  234
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTTTCTAGTTGCAACATGTCATAGAGCTCACTACCACCATTAATA  250

seq1  AAAGCCGAGCAGGGACCGGTGAATCAGCAGACAGACTTTGAAAGGGTGTG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGAGCAGGGACCGGTGAATCAGCAGACAGACTTTGAAAGGGTGTG  300

seq1  GCTACTTGGCAGGTCCATGCATCCAATCCCCTCGTCCCCGTCACTTACCT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGGCAGGTCCATGCATCCAATCCCCTCGTCCCCGTCACTTACCT  350

seq1  CAGCCTCAGTTAAGGAGTCTGTAAAGTGCCGACTGACCATGGAGCCGACT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAGTTAAGGAGTCTGTAAAGTGCCGACTGACCATGGAGCCGACT  400

seq1  TTCCTAGGCTCAGGCAGTGTCAAACATGATGATAATGTATGGGAATGCTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGCTCAGGCAGTGTCAAACATGATGATAATGTATGGGAATGCTT  450

seq1  ATTGTAAGCTGTAAAGTGTTTTACAAATGTGAACTCTTAGCTTTATTCTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGCTGTAAAGTGTTTTACAAATGTGAACTCTTAGCTTTATTCTC  500

seq1  TTGAGGCCTTTAACATGATGGATGAGGACAGTATTTCCAGATATTTTCAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCTTTAACATGATGGATGAGGACAGTATTTCCAGATATTTTCAG  550

seq1  ATGGAACATGGTTTATTAGGTGACAAATAATCGGCTGGGGTTCACGTGGG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATGGTTTATTAGGTGACAAATAATCGGCTGGGGTTCACGTGGG  600

seq1  GGAGGGCGGTGAAAATAGATACTATTCCTGATTCTCCATCATATGTGGTT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCGGTGAAAATAGATACTATTCCTGATTCTCCATCATATGTGGTT  650

seq1  ATTCAGGTTATTTTTAATTTTATGGCCCAAGAACCCCCTTTTTCTATAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTTATTTTTAATTTTATGGCCCAAGAACCCCCTTTTTCTATAAA  700

seq1  ATTTAATTAACTCAGGGTTCTATTTAAACAGCAAATCCAATGAAACGAAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTAACTCAGGGTTCTATTTAAACAGCAAATCCAATGAAACGAAA  750

seq1  TAACAGCCTATGGTTTATGCCTCCCCATGTTTTTCTCGTTTAATCCTTGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTATGGTTTATGCCTCCCCATGTTTTTCTCGTTTAATCCTTGA  800

seq1  GTGAAAATCATTTGGCAAGAGGAAGGGCTATATCTCAAGAAAGGAGGTTA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATCATTTGGCAAGAGGAAGGGCTATATCTCAAGAAAGGAGGTTA  850

seq1  TTTTAAAAGTTGTGCTTAAGGAGAAAATTAGCCAATAAATTATCTTTACG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTTGTGCTTAAGGAGAAAATTAGCCAATAAATTATCTTTACG  900

seq1  ATGTTAGTAAAAGTCTGCCATGAGTCCAACACATTTGAGATGTAAATTGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGTAAAAGTCTGCCATGAGTCCAACACATTTGAGATGTAAATTGT  950

seq1  GTGACTTAATTATTAACTTCATTTTAATATTTTCCCAACGCTGAAAATAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTAATTATTAACTTCATTTTAATATTTTCCCAACGCTGAAAATAG  1000

seq1  TCCTGAGCCATTTTATAAGCATGGAGATCCGGACTCCAGGAAGCCCAGTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGCCATTTTATAAGCATGGAGATCCGGACTCCAGGAAGCCCAGTT  1050

seq1  AGCTTCCATTGAATTC  1050
      ||||||||||||||||
seq2  AGCTTCCATTGAATTC  1066


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