BAC Information

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BAC

Clone NameB6Ng01-209C17
Chromosome4 (Build37)
Map Location 37,083,672 - 37,084,848
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209C17.bB6Ng01-209C17.g
ACCGA027860GA027861
length1,2481,181
definitionB6Ng01-209C17.b B6Ng01-209C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatacctctcctgggcatatatccag
aagatgccccaacaggtaagaaggacacatgctccactatgttcatagca
gccttatttataatagccagaagctggaaagaacctagatgcccctcaac
agaggaatgcatacagaaaatgtggtacatctacacaatggagtactact
cagctattaaaaagaatgaatttatgaaattcctagccaaatggatggac
ctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcaca
caatatgtattcactgataagtggatattagccccaaacctaggataccc
aagatataagatataatttgctaaacacatgaactcaaggagaatgagac
tggagtgtggacacttatgccccctcttagaattgggaacaaaacaccca
tggaaggagttaacagaagacggagttggagctggaatgaaaggatggac
aatgttagagaacttgccatagccagggaatccacccatatcagcactca
agctggacaccaattgcattaacatagcaagatttatgcagaccgagtaa
ccgttctctttgtggaacatacgttcccggggtctcacacaacaccgt

gaattcatgtgacaagaatataaaaatgtatttacagggtgaaggaacca
gcaggagagcagggggatagaagcaagcattcagtagaaagatatgttat
gagagtgagtgacaatacatataatgaaaatgtcataaaagctacattgt
gctgtgtgtttatatgcctatgcaaataattagtttcaattataagccag
gtgtgataatgcatacctttaatcccagcactacacacagaggcaggagg
agctctgtcagttaaagaccaggtggtctgcatggcaacttccagccagc
caggctacacagaaagacctgtctcttgtgagtatgactttcatgattca
gcactggggaaggaaacagaattaagttttcttttcttaagcttcccctt
acagatgacttcaaaacatctgggcatgtttcaataatttgtcacaattt
cacatatttacctagtttgataaaaaatagtttactttaatttttaatac
aaattttacaaaatcctgagaaagtttttttttaatatcttgaaaatctt
gaaattccttcttgggttactaagtagtgtaaaggggtagcaaaaagagc
aacaagaaaaagttggcagttttcttttccccatttttaggggacgggca
tgatggatttgtgtatagcctgctatctttcagttctatggtattctatt
gcttgaaatgaagcatacacattctaaaatataaggtaagggagaagtgt
tgagtagctcttcgttattaaaaaaattatgaatcaatgccttctagcta
aagtaagaattataagaattgccacagcactcaggtcgagtcagcttgtc
aggtagggatgcctaaaagctgctcatgaggcaaaaagagtttcaaggaa
gctctcctcctggagtctggcgttctctctaacccatacattaaattttc
cattcccacgttagcatagtgtatggatccacatgttctcctttagtatt
accctattataagtgccttttagattgaaatctgactagctaaagccagt
gtttcttaacgggtcctaagaaccgtcctgagcagaccttggggcttgga
aattcagtactgcccctggttctttacactatcacttggagtaagtttag
tcagtgtccgttcacggaatctaccatcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_37083672_37084848
seq2: B6Ng01-209C17.g_64_1244

seq1  GAATTCATGTGACAAGAATATAAAAATGTATTTACAGGGTGAAGGAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGACAAGAATATAAAAATGTATTTACAGGGTGAAGGAACCA  50

seq1  GCAGGAGAGCAGGGGGATAGAAGCAAGCATTCAGTAGAAAGATATGTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGAGCAGGGGGATAGAAGCAAGCATTCAGTAGAAAGATATGTTAT  100

seq1  GAGAGTGAGTGACAATACATATAATGAAAATGTCATAAAAGCTACATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGAGTGACAATACATATAATGAAAATGTCATAAAAGCTACATTGT  150

seq1  GCTGTGTGTTTATATGCCTATGCAAATAATTAGTTTCAATTATAAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTTTATATGCCTATGCAAATAATTAGTTTCAATTATAAGCCAG  200

seq1  GTGTGATAATGCATACCTTTAATCCCAGCACTACACACAGAGGCAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATAATGCATACCTTTAATCCCAGCACTACACACAGAGGCAGGAGG  250

seq1  AGCTCTGTCAGTTAAAGACCAGGTGGTCTGCATGGCAACTTCCAGCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTCAGTTAAAGACCAGGTGGTCTGCATGGCAACTTCCAGCCAGC  300

seq1  CAGGCTACACAGAAAGACCTGTCTCTTGTGAGTATGACTTTCATGATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACACAGAAAGACCTGTCTCTTGTGAGTATGACTTTCATGATTCA  350

seq1  GCACTGGGGAAGGAAACAGAATTAAGTTTTCTTTTCTTAAGCTTCCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGAAGGAAACAGAATTAAGTTTTCTTTTCTTAAGCTTCCCCTT  400

seq1  ACAGATGACTTCAAAACATCTGGGCATGTTTCAATAATTTGTCACAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGACTTCAAAACATCTGGGCATGTTTCAATAATTTGTCACAATTT  450

seq1  CACATATTTACCTAGTTTGATAAAAAATAGTTTACTTTAATTTTTAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTACCTAGTTTGATAAAAAATAGTTTACTTTAATTTTTAATAC  500

seq1  AAATTTTACAAAATCCTGAGAAAGTTTTTTTTTAATATCTTGAAAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACAAAATCCTGAGAAAGTTTTTTTTTAATATCTTGAAAATCTT  550

seq1  GAAATTCCTTCTTGGGTTACTAAGTAGTGTAAAGGGGTAGCAAAAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCCTTCTTGGGTTACTAAGTAGTGTAAAGGGGTAGCAAAAAGAGC  600

seq1  AACAAGAAAAAGTTGGCAGTTTTCTTTTCCCCATTTTTAGGGGACGGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAAAGTTGGCAGTTTTCTTTTCCCCATTTTTAGGGGACGGGCA  650

seq1  TGATGGATTTGTGTATAGCCTGCTATCTTTCAGTTCTATGGTATTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGATTTGTGTATAGCCTGCTATCTTTCAGTTCTATGGTATTCTATT  700

seq1  GCTTGAAATGAAGCATACACATTCTAAAATATAAGGTAAGGGAGAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAATGAAGCATACACATTCTAAAATATAAGGTAAGGGAGAAGTGT  750

seq1  TGAGTAGCTCTTCGTTATTAAAAAAATTATGAATCAATGCCTTCTAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGCTCTTCGTTATTAAAAAAATTATGAATCAATGCCTTCTAGCTA  800

seq1  AAGTAAGAATTATAAGAATTGCCACAGCACTCAGGTCGAGTCAGCTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAATTATAAGAATTGCCACAGCACTCAGGTCGAGTCAGCTTGTC  850

seq1  AGGTAGGGATGCCTAAAAGCTGCTCATGAGGCAAAAAGAGTTTCAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGATGCCTAAAAGCTGCTCATGAGGCAAAAAGAGTTTCAAGGAA  900

seq1  GCTCTCCTCCTGGAGTCTGGCGTTCTCTCTAACCCATACATT-AATTTTC  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTCTCCTCCTGGAGTCTGGCGTTCTCTCTAACCCATACATTAAATTTTC  950

seq1  CATTCCCACGTTAGCATAGTGTATGGATCCACATGTTCTCCTTTAGTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCACGTTAGCATAGTGTATGGATCCACATGTTCTCCTTTAGTATT  1000

seq1  ACCCTATTATAAGTGCCTTTTAAGATTGAATTCTGACTTAGCTAAAGCCA  1049
      ||||||||||||||||||||| |||||||| |||||| ||||||||||||
seq2  ACCCTATTATAAGTGCCTTTT-AGATTGAAATCTGAC-TAGCTAAAGCCA  1048

seq1  GTGTT--CTAAC-GGTCCT-AGAA-CGTCCTTGAGCAAGACCTT-GGGCT  1093
      |||||   |||| |||||| |||| ||||| ||||| ||||||| |||||
seq2  GTGTTTCTTAACGGGTCCTAAGAACCGTCC-TGAGC-AGACCTTGGGGCT  1096

seq1  TGG-AATTCAGTACTGCCCCTGGT--CTTACACTATCACTTTGAGTAAAA  1140
      ||| ||||||||||||||||||||   |||||||||||||| ||||  ||
seq2  TGGAAATTCAGTACTGCCCCTGGTTCTTTACACTATCACTTGGAGT--AA  1144

seq1  GTTAGGCCAGTG-CCCTTCACAGGAATCTACCATCACC  1177
      |||  | ||||| || ||||| ||||||||||||||||
seq2  GTTTAGTCAGTGTCCGTTCAC-GGAATCTACCATCACC  1181


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