BAC Information

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BAC

Clone NameB6Ng01-210K08
Chromosome4 (Build37)
Map Location 94,057,922 - 94,243,497
singlet/doubletdoublet
Overlap gene5830433M19Rik, Plaa
Upstream genenone
Downstream geneLOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210K08.bB6Ng01-210K08.g
ACCGA028935GA028936
length1,0211,176
definitionB6Ng01-210K08.b B6Ng01-210K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,242,489 - 94,243,497)(94,057,922 - 94,059,086)
sequence
gaattccataattattttcctgacctctttttttcttttcctaaaataga
ctaaacataccaagcttaaacacatactaagaaaaatcaggagaacttct
gggtccatcattaccagaagataccttcttgggcaagttgtcagtgactc
aagaggtgcaataagcatatagacataccaagtagcctactaaatatcta
agagaattaagatactgaactccacacttacagaaagtagattacaaaat
tgcatatgatggtaccgatttcctagcacttggggggttaagaacaaact
gagagtcataaaaaaccctgcctgttttaagaaacaagaacatcaaagtg
gcagtatcctaccatataaagatatgcaaattaagtggcataatacatat
aaaggtttttttttttttttttttttttcaaaatatcaggaggacattta
ggtcatcagtatttataactagtattgctgctgctttttcaactttacca
gtgatagcgaagttaaatgatgaaagcgttcctcatatggctcccaattt
aaagttcttaattcttttctttattaatgtatgtagcagtcgaactttta
atgtttgttaagatgacctggggagcttgtttaaattacttattttacta
ttctggttggcatacacttaaagtcaacaaattcatttcctctgtcatca
tcattattatatacattttttgttggtttttgctttgccttttttgtctg
tgatgccttgcttgtgccatctagattatatgtaaacttaggaagttttc
atcttccttcttcccttagactgacagggggctctgcacatcacaaaatt
ctgttggtgctctgcatctagtattcatgcttctgtctttagtaaacagt
gccaaaagtacaacctgaagatgtgactaggcttgttgtcagaagcatcc
cagaacaacatgtttaagttcttttcttgattgacttcatgcacaagcag
ctcgttcctgttctttttccg
gaattctgttcatgaaagtaaaagtggacaaagatgttggaaaacaatag
attgcaaatgccagacattttcctcactgtgctgtgggtctcctgactct
ctgtccccctttccagcttccttgatgtcctaggagactcactgatgtca
cctgcatcaacagccaccttcccctctggctgtttggagtttctgccagt
gggagccaggacaggaagactcaggcaggaagccaaagaaagtgtagaaa
acaataaactgagtaagggtgaaacaagacaggaagaactgggcaagagg
aaagatcaagtcagatgaattaatatgatgctgattgcctaagggaggta
atactctagttggtaaatgcgggaggcaaggcttcggaagacctcgggca
cacaaaactgctggttctgtgttgcacgaaggccaagactctgcatgtgg
atggattcacgtgcctctcaaatccaaagctgattgtaatggtcctgttc
tcagaagagtttggctggctggcctcatttgcagttcaagatcattcttg
gcacctgatagctgctttagaccttgtctaagaggcctgagtagaggcca
cagctaagaagtgtttctctatctgcaggtgcaaagggagcgtggataaa
tgatttttgtaaatctacctcaatgctgtacttcaagtatttcattttca
cacaatccattaagagatgaaatggaatcagtaggtcattacggtcagaa
gtatttaaatgatttaatatgactggagatataaatctatactgtagtcc
ttgatttcttctattcatccgaaaacctttattattcaaaagtgctcacc
aggtttctgcctcatgcagaaaaataccctcaagcagaggactgttgcat
attcttaccatattctcccaaacttgaatggtaagcagttgtgcatcagt
accaccaccccgctgccacgggtgtgcataatggagtcctccacaataag
aacataaattatgacagggaggaaaacaaacccaaaaagctaaattaccc
agtggagctgattagcattattgtattagagacaccttgtacagaatgtg
ggtttgctttctttaggaccctagtctccagagcaattgattctcatcat
ttttggactgtgaagtcttatatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94242489_94243497
seq2: B6Ng01-210K08.b_43_1063 (reverse)

seq1  CGGAAAAAGAACAGG-ACGAGCTGCTGGTGCATG-AGTCAATC-AGAAA-  46
      ||||||||||||||| |||||||||| ||||||| |||||||| ||||| 
seq2  CGGAAAAAGAACAGGAACGAGCTGCTTGTGCATGAAGTCAATCAAGAAAA  50

seq1  -GACTTAAACATGT--GTCTGGGATGC-TCTGACAAC-AGCCTAGTCACA  91
        ||||||||||||   |||||||||| ||||||||| ||||||||||||
seq2  GAACTTAAACATGTTGTTCTGGGATGCTTCTGACAACAAGCCTAGTCACA  100

seq1  TC-TCAGGTTGTACTTTTGGCACTG-TTACTAAAGACAGAAGCATGAATA  139
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTCAGGTTGTACTTTTGGCACTGTTTACTAAAGACAGAAGCATGAATA  150

seq1  CTAGATGCAGAGCACCAACAGAATTTTGTGATGTGCAGAGCCCCCTGTCA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCAGAGCACCAACAGAATTTTGTGATGTGCAGAGCCCCCTGTCA  200

seq1  GTCTAAGGGAAGAAGGAAGATGAAAACTTCCTAAGTTTACATATAATCTA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGGAAGAAGGAAGATGAAAACTTCCTAAGTTTACATATAATCTA  250

seq1  GATGGCACAAGCAAGGCATCACAGACAAAAAAGGCAAAGCAAAAACCAAC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACAAGCAAGGCATCACAGACAAAAAAGGCAAAGCAAAAACCAAC  300

seq1  AAAAAATGTATATAATAATGATGATGACAGAGGAAATGAATTTGTTGACT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTATATAATAATGATGATGACAGAGGAAATGAATTTGTTGACT  350

seq1  TTAAGTGTATGCCAACCAGAATAGTAAAATAAGTAATTTAAACAAGCTCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTATGCCAACCAGAATAGTAAAATAAGTAATTTAAACAAGCTCC  400

seq1  CCAGGTCATCTTAACAAACATTAAAAGTTCGACTGCTACATACATTAATA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCATCTTAACAAACATTAAAAGTTCGACTGCTACATACATTAATA  450

seq1  AAGAAAAGAATTAAGAACTTTAAATTGGGAGCCATATGAGGAACGCTTTC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAATTAAGAACTTTAAATTGGGAGCCATATGAGGAACGCTTTC  500

seq1  ATCATTTAACTTCGCTATCACTGGTAAAGTTGAAAAAGCAGCAGCAATAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAACTTCGCTATCACTGGTAAAGTTGAAAAAGCAGCAGCAATAC  550

seq1  TAGTTATAAATACTGATGACCTAAATGTCCTCCTGATATTTTG-AAAAAA  588
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGTTATAAATACTGATGACCTAAATGTCCTCCTGATATTTTGAAAAAAA  600

seq1  AAAAAAAAAAAAAAAACCTTTATATGTATTATGCCACTTAATTTGCATAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACCTTTATATGTATTATGCCACTTAATTTGCATAT  650

seq1  CTTTATATGGTAGGATACTGCCACTTTGATGTTCTTGTTTCTTAAAACAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGGTAGGATACTGCCACTTTGATGTTCTTGTTTCTTAAAACAG  700

seq1  GCAGGGTTTTTTATGACTCTCAGTTTGTTCTTAACCCCCCAAGTGCTAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTTTTTTATGACTCTCAGTTTGTTCTTAACCCCCCAAGTGCTAGG  750

seq1  AAATCGGTACCATCATATGCAATTTTGTAATCTACTTTCTGTAAGTGTGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGTACCATCATATGCAATTTTGTAATCTACTTTCTGTAAGTGTGG  800

seq1  AGTTCAGTATCTTAATTCTCTTAGATATTTAGTAGGCTACTTGGTATGTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTATCTTAATTCTCTTAGATATTTAGTAGGCTACTTGGTATGTC  850

seq1  TATATGCTTATTGCACCTCTTGAGTCACTGACAACTTGCCCAAGAAGGTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTTATTGCACCTCTTGAGTCACTGACAACTTGCCCAAGAAGGTA  900

seq1  TCTTCTGGTAATGATGGACCCAGAAGTTCTCCTGATTTTTCTTAGTATGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTAATGATGGACCCAGAAGTTCTCCTGATTTTTCTTAGTATGT  950

seq1  GTTTAAGCTTGGTATGTTTAGTCTATTTTAGGAAAAGAAAAAAAGAGGTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGCTTGGTATGTTTAGTCTATTTTAGGAAAAGAAAAAAAGAGGTC  1000

seq1  AGGAAAATAATTATGGAATTC  1009
      |||||||||||||||||||||
seq2  AGGAAAATAATTATGGAATTC  1021

seq1: chr4_94057922_94059086
seq2: B6Ng01-210K08.g_65_1240

seq1  GAATTCTGTTCATGAAAGTAAAAGTGGACAAAGATGTTGGAAAACAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCATGAAAGTAAAAGTGGACAAAGATGTTGGAAAACAATAG  50

seq1  ATTGCAAATGCCAGACATTTTCCTCACTGTGCTGTGGGTCTCCTGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAATGCCAGACATTTTCCTCACTGTGCTGTGGGTCTCCTGACTCT  100

seq1  CTGTCCCCCTTTCCAGCTTCCTTGATGTCCTAGGAGACTCACTGATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCCTTTCCAGCTTCCTTGATGTCCTAGGAGACTCACTGATGTCA  150

seq1  CCTGCATCAACAGCCACCTTCCCCTCTGGCTGTTTGGAGTTTCTGCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCAACAGCCACCTTCCCCTCTGGCTGTTTGGAGTTTCTGCCAGT  200

seq1  GGGAGCCAGGACAGGAAGACTCAGGCAGGAAGCCAAAGAAAGTGTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAGGACAGGAAGACTCAGGCAGGAAGCCAAAGAAAGTGTAGAAA  250

seq1  ACAATAAACTGAGTAAGGGTGAAACAAGACAGGAAGAACTGGGCAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAACTGAGTAAGGGTGAAACAAGACAGGAAGAACTGGGCAAGAGG  300

seq1  AAAGATCAAGTCAGATGAATTAATATGATGCTGATTGCCTAAGGGAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAAGTCAGATGAATTAATATGATGCTGATTGCCTAAGGGAGGTA  350

seq1  ATACTCTAGTTGGTAAATGCGGGAGGCAAGGCTTCGGAAGACCTCGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTAGTTGGTAAATGCGGGAGGCAAGGCTTCGGAAGACCTCGGGCA  400

seq1  CACAAAACTGCTGGTTCTGTGTTGCACGAAGGCCAAGACTCTGCATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACTGCTGGTTCTGTGTTGCACGAAGGCCAAGACTCTGCATGTGG  450

seq1  ATGGATTCACGTGCCTCTCAAATCCAAAGCTGATTGTAATGGTCCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCACGTGCCTCTCAAATCCAAAGCTGATTGTAATGGTCCTGTTC  500

seq1  TCAGAAGAGTTTGGCTGGCTGGCCTCATTTGCAGTTCAAGATCATTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGTTTGGCTGGCTGGCCTCATTTGCAGTTCAAGATCATTCTTG  550

seq1  GCACCTGATAGCTGCTTTAGACCTTGTCTAAGAGGCCTGAGTAGAGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGATAGCTGCTTTAGACCTTGTCTAAGAGGCCTGAGTAGAGGCCA  600

seq1  CAGCTAAGAAGTGTTTCTCTATCTGCAGGTGCAAAGGGAGCGTGGATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGAAGTGTTTCTCTATCTGCAGGTGCAAAGGGAGCGTGGATAAA  650

seq1  TGATTTTTGTAAATCTACCTCAATGCTGTACTTCAAGTATTTCATTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGTAAATCTACCTCAATGCTGTACTTCAAGTATTTCATTTTCA  700

seq1  CACAATCCATTAAGAGATGAAATGGAATCAGTAGGTCATTACGGTCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCATTAAGAGATGAAATGGAATCAGTAGGTCATTACGGTCAGAA  750

seq1  GTATTTAAATGATTTAATATGACTGGAGATATAAATCTATACTGTAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAATGATTTAATATGACTGGAGATATAAATCTATACTGTAGTCC  800

seq1  TTGATTTCTTCTATTCATCCGAAAACCTTTATTATTCAAAAGTGCTCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTTCTATTCATCCGAAAACCTTTATTATTCAAAAGTGCTCACC  850

seq1  AGG-TTCTGCCTCATGCAGAAAAATACCCTCAAGCAGAGGACTGTTGCAT  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGCCTCATGCAGAAAAATACCCTCAAGCAGAGGACTGTTGCAT  900

seq1  ATTCTTACCATATTCTCCCAAACTTGAATGGTAAGCAGTTGTGCATCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACCATATTCTCCCAAACTTGAATGGTAAGCAGTTGTGCATCAGT  950

seq1  ACCACCA-CCCGCTGCCACGGGTGTGCAT-ATGGAGT-CTCACAAATAAG  996
      ||||||| ||||||||||||||||||||| ||||||| |||   ||||||
seq2  ACCACCACCCCGCTGCCACGGGTGTGCATAATGGAGTCCTCCACAATAAG  1000

seq1  AACATAAAATAATGACA-GGAAGAAAACAAACC--AAAAGCTAAAATTAC  1043
      ||||| |||| |||||| ||| |||||||||||  |||||||||| |  |
seq2  AACAT-AAATTATGACAGGGAGGAAAACAAACCCAAAAAGCTAAATTACC  1049

seq1  CAGTGGAGCTGATTAGCAT--ATGTATAAGAGACA-CTTGTACAG-ATGT  1089
      |||||||||||||||||||   ||||| ||||||| ||||||||| ||||
seq2  CAGTGGAGCTGATTAGCATTATTGTATTAGAGACACCTTGTACAGAATGT  1099

seq1  GGG-TTGCTTTCTTTAGAACCTAAGTTCTCAGAGC-AGTGATTCTTCATC  1137
      ||| ||||||||||||| |||  |||   |||||| | |||||| |||||
seq2  GGGTTTGCTTTCTTTAGGACCCTAGTCTCCAGAGCAATTGATTC-TCATC  1148

seq1  ATTTTTTGAGTTGTGAAGTCTTAT-TATT  1165
      |||||| ||  ||||||||||||| ||||
seq2  ATTTTTGGA-CTGTGAAGTCTTATATATT  1176