BAC Information

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BAC

Clone NameB6Ng01-212O15
Chromosome4 (Build37)4 (Build37)
Map Location 146,045,413 - 146,046,216145,648,931 - 145,649,551
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212O15.bB6Ng01-212O15.g
ACCGA030588GA030589
length969996
definitionB6Ng01-212O15.b B6Ng01-212O15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,045,413 - 146,046,216)(145,648,931 - 145,649,551)
sequence
gaattcaaccctgctccacaagtgcagcagagtgcttttaattactgagc
tgcctccccaagcctctaaatcacttcttaatatgcaggaatgtatataa
actgacaacatatccttggcaacctcactaaaactgtgatatagctctaa
atgtcacacaggatgagcaatgataaatacttacaaagtttaaaaaaaaa
aaaaaagaaaaagactggagctggacacttagagctagcttcaaagcaca
aggccctctcctgtcctctgcagctacctgcacttgtgtgtgtgtgtggc
ctgcgtactgtccgtaggtgtgtgggtctatttttgggtctcctattgaa
ttccattaatccacctacttatttctttctataccagtaccatacaaatt
tttattactatttctctgccatacatctttaagttacagaaattgatagc
tccagattttttttttgttgttcaagaatattttatctatcctgtggttt
ttgttttgtttactgttccatacaacgttgagaatatttctttcaagatc
tgtgaagatttgtgctaaatttttgataagaattgtactgagtgtctaga
ttgctttttggtaagatggacatattcattatgttaatcctattgataca
tgaacaagggagatcttttcatgttctgatatcttcctgtttctttctta
agatactttaagttcttctcctacaggttttcacttgcttgtttagaggt
aactgaaggtattttattttgtttgtggctaaagtggagggttctgtttc
cataacttctttttcaacccttttaatcaattgtgtgtagcaggctaaag
gctttctttaagtcaattgtgtatgcagacactttgctaaatgtttatca
actgtaattttttggtagaattttttgtctcacttatatacattatcata
atatctgatttcttctttt
gaattcactctgtagaacaggttggccttgaactcagaaatctgcctacc
tctgcctcccaagtgctgggattaaaggcatgcgccaccactgccctgct
atgactgtatttttatttcattcagagacaacaacattttaagtttccac
caagaataggcatgtagcaatgttttaactttgcttttacagttttgctg
acatttgatatttttgttttctgataatagccatttaaaaaattttttat
tgttattttaattaggtacttacttcatttacatttccaatgctacccca
aaagtccccaaaccctcccaccccattcccctcccccactacttccactt
cttggccctggcgttcccctgtactgaggcatataaagtttgcaagacca
atgggcctctctttccactgatggccgactacgtcatcttctgatatata
tgcggctggagacacaagctctggggggcgggggtactggttagttcata
ttgttgttccacctatagggttgcagacccctttagctccttgggtactt
tctctagctcctccattgggggccctctgatccatccaatagctgactgt
gagcatccacttctgtgtttgctaggcccctgcgtagcctcacaagagac
agctatatcagggtcctttcagcaaaatcttgctagtgtgtgcaatggtg
tcagcgtttgggggctgattatgggatggatccccgggtatggcagcctc
tagatggtccatcctttcgtctcagctccattctttgtaacttcttccat
gggtgttttgttcccaattctaagaaggagcaaagtgttcacactttggt
cttcgttcttcttgagtttcatgtgttttgcaaattgtatcttgtatctt
ggtagtctaagtttctgggctaatattccacttatcagtgagtacatatc
atgtgagttctttttgtgattggttacctcactcaggatgatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146045413_146046216
seq2: B6Ng01-212O15.b_48_851

seq1  GAATTCAACCCTGCTCCACAAGTGCAGCAGAGTGCTTTTAATTACTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCTGCTCCACAAGTGCAGCAGAGTGCTTTTAATTACTGAGC  50

seq1  TGCCTCCCCAAGCCTCTAAATCACTTCTTAATATGCAGGAATGTATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCCAAGCCTCTAAATCACTTCTTAATATGCAGGAATGTATATAA  100

seq1  ACTGACAACATATCCTTGGCAACCTCACTAAAACTGTGATATAGCTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAACATATCCTTGGCAACCTCACTAAAACTGTGATATAGCTCTAA  150

seq1  ATGTCACACAGGATGAGCAATGATAAATACTTACAAAGTTTAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACACAGGATGAGCAATGATAAATACTTACAAAGTTTAAAAAAAAA  200

seq1  AAAAAAGAAAAAGACTGGAGCTGGACACTTAGAGCTAGCTTCAAAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAGACTGGAGCTGGACACTTAGAGCTAGCTTCAAAGCACA  250

seq1  AGGCCCTCTCCTGTCCTCTGCAGCTACCTGCACTTGTGTGTGTGTGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCTCCTGTCCTCTGCAGCTACCTGCACTTGTGTGTGTGTGTGGC  300

seq1  CTGCGTACTGTCCGTAGGTGTGTGGGTCTATTTTTGGGTCTCCTATTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTACTGTCCGTAGGTGTGTGGGTCTATTTTTGGGTCTCCTATTGAA  350

seq1  TTCCATTAATCCACCTACTTATTTCTTTCTATACCAGTACCATACAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAATCCACCTACTTATTTCTTTCTATACCAGTACCATACAAATT  400

seq1  TTTATTACTATTTCTCTGCCATACATCTTTAAGTTACAGAAATTGATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACTATTTCTCTGCCATACATCTTTAAGTTACAGAAATTGATAGC  450

seq1  TCCAGATTTTTTTTTTGTTGTTCAAGAATATTTTATCTATCCTGTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTTTTTTTTTGTTGTTCAAGAATATTTTATCTATCCTGTGGTTT  500

seq1  TTGTTTTGTTTACTGTTCCATACAACGTTGAGAATATTTCTTTCAAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTACTGTTCCATACAACGTTGAGAATATTTCTTTCAAGATC  550

seq1  TGTGAAGATTTGTGCTAAATTTTTGATAAGAATTGTACTGAGTGTCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGATTTGTGCTAAATTTTTGATAAGAATTGTACTGAGTGTCTAGA  600

seq1  TTGCTTTTTGGTAAGATGGACATATTCATTATGTTAATCCTATTGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGGTAAGATGGACATATTCATTATGTTAATCCTATTGATACA  650

seq1  TGAACAAGGGAGATCTTTTCATGTTCTGATATCTTCCTGTTTCTTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGGGAGATCTTTTCATGTTCTGATATCTTCCTGTTTCTTTCTTA  700

seq1  AGATACTTTAAGTTCTTCTCCTACAGGTTTTCACTTGCTTGTTTAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTTAAGTTCTTCTCCTACAGGTTTTCACTTGCTTGTTTAGAGGT  750

seq1  AACTGAAGGTATTTTATTTTGTTTGTGGCTAAAGTGGAGGGTTCTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGGTATTTTATTTTGTTTGTGGCTAAAGTGGAGGGTTCTGTTTC  800

seq1  CATA  804
      ||||
seq2  CATA  804

seq1: chr4_145648931_145649551
seq2: B6Ng01-212O15.g_66_677

seq1  GAATTCACTCTGTAGAACAGGTTGGCCTTGAACTCAGAAATCTGCCGACC  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATTCACTCTGTAGAACAGGTTGGCCTTGAACTCAGAAATCTGCCTACC  50

seq1  TCTTCCTCCCAAGTGCTGGGATGAAAGGCATGTGCCACCACTGCCCGGAT  100
      ||| |||||||||||||||||| ||||||||| ||||||||||||| | |
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCTGCT  100

seq1  ACGACTGTATTTTTATTTCATTCAGAGACAACAACATTTTAAGTTTCCAC  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTATTTTTATTTCATTCAGAGACAACAACATTTTAAGTTTCCAC  150

seq1  CAAGAATAGGCATGTACCAATGTTTTAACTTTGCTTTTACAGTTTGGCTG  200
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CAAGAATAGGCATGTAGCAATGTTTTAACTTTGCTTTTACAGTTTTGCTG  200

seq1  ACATTTGTTATTTTTGTTTTCTGATAATAACCATTTTTTAAATTTTTTAT  250
      ||||||| ||||||||||||||||||||| ||||||   |||||||||||
seq2  ACATTTGATATTTTTGTTTTCTGATAATAGCCATTTAAAAAATTTTTTAT  250

seq1  TATTATTTTAATTAGGTACTTACTTCATTTACATTTCAAATGCTACCCCA  300
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTATTTTAATTAGGTACTTACTTCATTTACATTTCCAATGCTACCCCA  300

seq1  AAAGTCCCCCAAACCCTCCCACCCCATTCCCCTCCCCCAATACTCCCACT  350
      ||||| ||||||||||||||||||||||||||||||||| |||| |||||
seq2  AAAGT-CCCCAAACCCTCCCACCCCATTCCCCTCCCCCACTACTTCCACT  349

seq1  TCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGACC  399

seq1  AGTGGGCCTCTCTTTCCACTGATGGCCAACTAGATCATCTTCTGATACAT  450
      | ||||||||||||||||||||||||| ||||  ||||||||||||| ||
seq2  AATGGGCCTCTCTTTCCACTGATGGCCGACTACGTCATCTTCTGATATAT  449

seq1  ATGCAGCTGGAAACACGAGCTCGGGGGCAGGGGGGGAGGAGGGTACTGGT  500
      |||| |||||| |||| |||||        |||||| || ||||||||||
seq2  ATGCGGCTGGAGACACAAGCTC-------TGGGGGGCGG-GGGTACTGGT  491

seq1  TAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCT  541

seq1  TGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATA  600
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTCTGATCCATCCAATA  591

seq1  GCTAACTGTGAGCATCCACTT  621
      ||| |||||||||||||||||
seq2  GCTGACTGTGAGCATCCACTT  612