BAC Information

Click to search

BAC

Clone NameB6Ng01-215L05
Chromosome4 (Build37)
Map Location 8,223,059 - 8,224,148
singlet/doubletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215L05.bB6Ng01-215L05.g
ACCGA032589GA032590
length1,1681,089
definitionB6Ng01-215L05.b B6Ng01-215L05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccactttttaatggggttatttgatt
ttctggagttcaccttcttgagttctttatatatactggatattagttcc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgcctcgcagaagctttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttatatttgaccttagtataaggagataggaatggatcaattcac
attcttctacatgataactgccagttgtgccagcactatttgttgaaaat
gctgtctttcttccactggatggctttagctcccttgtcgaagatcaagt
gatcataggtgtgtgggttcatttctgggtcttcaattctgttccattgg
tctacttgtctgtcagtataccagtaccgtgcattttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccggtggttcttt
tatccttgaggagagtttttgctatcctaggatttttgttattccagatg
aatttgcagattgctttttctaatttgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
tgagatcttcttaatttctttcttcagagacttgacgttcttatcataca
gatctttcacttccttacttagagtcacgccaagataattttatacgatt
tgtgactattgagaaggtgttggtttccttaatttcgtttctcagaactg
gttaattctttgtggtagagaaagggccattgactttgtttgagcctatt
tttattatccagctacttcacgaagctgttttatcaagtttagagtttct
ctggtgaaatttaggtctacttatatatactatccattcactcgtcaaaa
agtgtaatatttgtgact

gaattctacagaggaaagatagcactttgtcctgagtacctgactctcag
acctgtcttgttcagtcaagcccttcatggcagagaactgcagtccaagg
accactctcataaaaggcatccctgtcttcccataggtgatgtaaataga
aaactctgtttgagttctaaaaacatcacttaccaaagtgtttctacaga
aatgattcatagacaagttcatgaccaccacacagctacctgaaaagctt
ccagccaaggccatcctgcacatactgaagaactgaagtccagtggctgg
ctggaggcctattatcagagagcgatgtggggaaagactgaaatgtggag
aaaggctcaaaatagatactttcccattctgtgctaaaggctttgggaat
gttcagatatagaataaattataaaaaagaaatctttttagggtattatt
tatttgcttacagaagttaattcctcacattgtttgaagatatcacttaa
gttgaaatagaaatgaacataggatataaagagtatcatgatgctgcagt
cacttatggaatactaaagttatggtgaatttgtttgattttgtctggcc
atagtttttcattttttgataaaaaataatgttaacttttaggacagtgg
ttttcaatcttggccacaccttctgagcatcttggaagccttttggaatg
cttgggtggattgtggttgatctgaggtaaggattgttgatgcccatgtt
ttaaagatcccttaatgagtagactaagttgaagcccccatttttgcagg
gcctcttcctcctagcccacctactgtatatcctaaggaggaaaactaga
ctctagcaatagagacaagagtttaagtgaaacaattatgatcaaatatg
gggctaccatgggtagcttaccagtgaagcattctgcccttgtgagcaca
cagactcaagtttatggttctcagaaccaacaagaacaggtgtgggcaag
tcttccaattcctaagatggggagtagagacagttgacctcttgggatca
ctgacatgtctcaatgctagaagagtgatgacttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8223059_8224148
seq2: B6Ng01-215L05.g_67_1155

seq1  GAATTCTACAGAGGAAAGATAGCACTTTGTCCTGAGTACCTGACTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAGGAAAGATAGCACTTTGTCCTGAGTACCTGACTCTCAG  50

seq1  ACCTGTCTTGTTCAGTCAAGCCCTTCATGGCAGAGAACTGCAGTCCAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTTGTTCAGTCAAGCCCTTCATGGCAGAGAACTGCAGTCCAAGG  100

seq1  ACCACTCTCATAAAAGGCATCCCTGTCTTCCCATAGGTGATGTAAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTCATAAAAGGCATCCCTGTCTTCCCATAGGTGATGTAAATAGA  150

seq1  AAACTCTGTTTGAGTTCTAAAAACATCACTTACCAAAGTGTTTCTACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTTTGAGTTCTAAAAACATCACTTACCAAAGTGTTTCTACAGA  200

seq1  AATGATTCATAGACAAGTTCATGACCACCACACAGCTACCTGAAAAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCATAGACAAGTTCATGACCACCACACAGCTACCTGAAAAGCTT  250

seq1  CCAGCCAAGGCCATCCTGCACATACTGAAGAACTGAAGTCCAGTGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAAGGCCATCCTGCACATACTGAAGAACTGAAGTCCAGTGGCTGG  300

seq1  CTGGAGGCCTATTATCAGAGAGCGATGTGGGGAAAGACTGAAATGTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCCTATTATCAGAGAGCGATGTGGGGAAAGACTGAAATGTGGAG  350

seq1  AAAGGCTCAAAATAGATACTTTCCCATTCTGTGCTAAAGGCTTTGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCAAAATAGATACTTTCCCATTCTGTGCTAAAGGCTTTGGGAAT  400

seq1  GTTCAGATATAGAATAAATTATAAAAAAGAAATCTTTTTAGGGTATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGATATAGAATAAATTATAAAAAAGAAATCTTTTTAGGGTATTATT  450

seq1  TATTTGCTTACAGAAGTTAATTCCTCACATTGTTTGAAGATATCACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTACAGAAGTTAATTCCTCACATTGTTTGAAGATATCACTTAA  500

seq1  GTTGAAATAGAAATGAACATAGGATATAAAGAGTATCATGATGCTGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATAGAAATGAACATAGGATATAAAGAGTATCATGATGCTGCAGT  550

seq1  CACTTATGGAATACTAAAGTTATGGTGAATTTGTTTGATTTTGTCTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGGAATACTAAAGTTATGGTGAATTTGTTTGATTTTGTCTGGCC  600

seq1  ATAGTTTTTCATTTTTTGATAAAAAATAATGTTAACTTTTAGGACAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTCATTTTTTGATAAAAAATAATGTTAACTTTTAGGACAGTGG  650

seq1  TTTTCAATCTTGGCCACACCTTCTGAGCATCTTGGAAGCCTTTTGGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATCTTGGCCACACCTTCTGAGCATCTTGGAAGCCTTTTGGAATG  700

seq1  CTTGGGTGGATTGTGGTTGATCTGAGGTAAGGATTGTTGATGCCCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTGGATTGTGGTTGATCTGAGGTAAGGATTGTTGATGCCCATGTT  750

seq1  TTAAAGATCCCTTAATGAGTAGACTAAGTTGAAGCCCCCATTTTTGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCCCTTAATGAGTAGACTAAGTTGAAGCCCCCATTTTTGCAGG  800

seq1  GCCTCTTCCTCCTAGCCCACCTACTGTATATCCTAAGAAGGAAAACTAGA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCTCTTCCTCCTAGCCCACCTACTGTATATCCTAAGGAGGAAAACTAGA  850

seq1  CTCTAGCAATAGAGACAAGAGTTTAAGTGAAACAATTATGATCAAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAATAGAGACAAGAGTTTAAGTGAAACAATTATGATCAAATATG  900

seq1  GGGCTACCAT-GGTAGCTTACCAGTGAAGCA-TCTG-CCTTGTGAGCACA  947
      |||||||||| |||||||||||||||||||| |||| |||||||||||||
seq2  GGGCTACCATGGGTAGCTTACCAGTGAAGCATTCTGCCCTTGTGAGCACA  950

seq1  CAGACTCAAG-TTAT-GTTCTCAGAACCCAACAAGAACAGGTGTGG--CA  993
      |||||||||| |||| |||||||||| |||||||||||||||||||   |
seq2  CAGACTCAAGTTTATGGTTCTCAGAA-CCAACAAGAACAGGTGTGGGCAA  999

seq1  GGCTTCCAATCCCAGGGATGGGGAAGGTAGAGACAGGTGGACCCTCTGGG  1043
      | |||||||| ||   ||||||||  ||||||||| || ||||   ||||
seq2  GTCTTCCAATTCCTAAGATGGGGA--GTAGAGACA-GTTGACCTCTTGGG  1046

seq1  ATCACTGACCATGTCTCCAAAATGCTAG-AGAGTGGATGATTTTTTTT  1090
      |||||||| ||||||||   |||||||| ||||| ||||| |||||||
seq2  ATCACTGA-CATGTCTC---AATGCTAGAAGAGT-GATGACTTTTTTT  1089


| Home | SequenceCutter | Blast | Download |